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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0483300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Calcium-binding EF-hand domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.89 (0.0451) R2 : 0.0611
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.14 (0.211) R2dE : 0.0712 R2E : 0.0413
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.255 (0.101) R2dN8 : 0.0197 R2N8 : -0.0101
σ : 0.831
deviance : 318.73
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 1.65
memory length : 2895
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
316.66 0.836 2.88 0.139 0.214 1.08 -0.0473 -0.248 0.302 18.6 1.923 2892 -- --
316.07 0.828 2.89 0.12 0.222 1.14 -0.0526 -- 0.289 18.8 1.76 2883 -- --
316.01 0.828 2.88 0.141 0.213 1.12 -- -0.248 0.298 18.5 1.766 2883 -- --
315.99 0.828 2.89 0.11 0.217 1.14 -- -- 0.285 18.7 1.7 2883 -- --
318.49 0.831 2.88 0.127 -- 1.14 -- -0.217 0.29 -- 1.765 2885 -- --
336.48 0.86 2.94 -0.0425 0.23 -- 0.00497 -- 0.043 18.6 -- -- -- --
336.48 0.859 2.94 -0.0426 0.23 -- -- -- 0.043 18.6 -- -- -- --
318.5 0.831 2.88 0.113 -- 1.18 -- -- 0.28 -- 1.652 2895 -- --
316.25 0.828 2.89 -- 0.216 1.12 -- -- 0.273 18.9 1.702 2883 -- --
339.24 0.861 2.94 -0.0482 -- -- -- -- 0.0383 -- -- -- -- --
336.53 0.858 2.94 -- 0.231 -- -- -- 0.0478 18.5 -- -- -- --
318.73 0.831 2.89 -- -- 1.14 -- -- 0.255 -- 1.65 2895 -- --
339.3 0.86 2.94 -- -- -- -- -- 0.0437 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 316.45 radiation 1.0 720 < th dose dependent rect. 17 11
2 316.83 radiation 10.0 720 < th dose dependent rect. 16 13
3 316.96 radiation 1.0 720 < th dose dependent rect. 5 23
4 317.00 radiation 30.0 720 < th dose dependent rect. 16 14
12 317.64 radiation 1.0 720 < th dose dependent rect. 18 9
14 317.69 humidity 60.0 720 > th dose independent rect. 18 10
15 317.74 humidity 80.0 43200 > th dose independent rect. 17 4
16 317.81 humidity 80.0 43200 < th dose independent rect. 16 5
19 317.95 humidity 70.0 43200 > th dose dependent rect. 17 3
21 318.03 radiation 1.0 720 > th dose independent rect. 13 17
22 318.04 humidity 70.0 43200 > th dose dependent rect. 16 5
23 318.06 humidity 80.0 43200 > th dose independent rect. 15 7
24 318.11 radiation 1.0 720 < th dose independent rect. 16 14
27 318.16 humidity 80.0 43200 < th dose independent rect. 15 7
28 318.18 radiation 1.0 720 > th dose independent rect. 13 6
40 318.21 precipitation 0.1 1440 > th dose independent rect. 21 6
41 318.21 precipitation 0.1 1440 > th dose dependent rect. 21 6
45 318.25 precipitation 0.1 720 < th dose independent rect. 20 6
46 318.25 precipitation 0.1 720 < th dose dependent rect. 20 6
47 318.29 radiation 1.0 720 < th dose independent rect. 16 12
51 318.37 humidity 70.0 43200 > th dose dependent rect. 18 1
57 318.49 radiation 10.0 720 < th dose dependent rect. 16 5
58 318.53 radiation 1.0 720 < th dose dependent sin 13 NA
74 318.81 radiation 1.0 720 < th dose dependent rect. 5 15
75 318.82 wind 5.0 270 > th dose independent rect. 1 2
83 318.93 humidity 80.0 43200 > th dose independent rect. 18 2
88 318.99 wind 5.0 270 > th dose dependent rect. 1 3
91 319.01 humidity 90.0 1440 < th dose independent rect. 9 14
92 319.01 humidity 80.0 43200 > th dose dependent rect. 20 1
95 319.03 wind 5.0 270 > th dose dependent rect. 2 1
108 319.18 radiation 1.0 720 < th dose dependent rect. 1 18
125 319.32 humidity 90.0 1440 < th dose independent sin 21 NA
136 319.39 radiation 1.0 720 < th dose dependent rect. 16 18
140 319.41 humidity 90.0 4320 < th dose independent rect. 14 1
144 319.44 humidity 80.0 43200 < th dose independent rect. 7 15
201 319.71 radiation 1.0 720 < th dose independent rect. 5 23
218 319.78 humidity 70.0 1440 > th dose dependent rect. 14 12
225 319.81 humidity 80.0 43200 > th dose independent rect. 6 16
231 319.83 humidity 70.0 1440 > th dose dependent rect. 14 14
232 319.84 humidity 90.0 4320 < th dose independent rect. 13 3
236 319.85 radiation 1.0 720 < th dose dependent rect. 24 23
239 319.86 radiation 20.0 720 < th dose independent rect. 16 14
240 319.87 radiation 1.0 720 < th dose independent rect. 16 5
254 319.91 temperature 15.0 270 > th dose independent rect. 9 12
259 319.94 humidity 80.0 1440 < th dose independent rect. 15 5
269 319.98 humidity 50.0 720 > th dose dependent rect. 19 1
273 320.00 radiation 1.0 720 < th dose independent rect. 1 19
287 320.05 precipitation 0.1 43200 > th dose independent rect. 19 3
302 320.08 radiation 1.0 4320 < th dose independent rect. 10 19
307 320.11 humidity 80.0 43200 < th dose independent sin 19 NA
309 320.11 radiation 1.0 4320 < th dose independent rect. 8 21
326 320.15 precipitation 0.1 43200 < th dose independent rect. 19 3
327 320.15 precipitation 0.1 43200 < th dose dependent rect. 19 3
335 320.17 radiation 1.0 4320 < th dose independent rect. 10 14
336 320.17 humidity 90.0 1440 < th dose independent rect. 5 17
339 320.17 humidity 70.0 1440 > th dose dependent rect. 14 7
350 320.19 radiation 1.0 4320 < th dose independent rect. 10 11
360 320.20 radiation 1.0 4320 < th dose independent rect. 8 16
365 320.21 radiation 1.0 4320 < th dose independent rect. 10 9
373 320.22 humidity 60.0 720 > th dose independent rect. 17 12
374 320.22 radiation 1.0 4320 < th dose independent rect. 8 13
420 320.28 radiation 1.0 720 < th dose independent sin 13 NA
423 320.28 radiation 1.0 4320 < th dose independent rect. 14 15
429 320.28 radiation 10.0 4320 < th dose dependent rect. 12 18
433 320.29 humidity 70.0 1440 > th dose dependent sin 16 NA
446 320.31 humidity 80.0 43200 > th dose independent sin 19 NA
454 320.32 precipitation 0.1 43200 > th dose independent rect. 8 15
461 320.33 precipitation 0.1 43200 < th dose independent rect. 8 17
463 320.33 precipitation 0.1 43200 < th dose dependent rect. 8 17
466 320.34 precipitation 0.1 43200 < th dose independent rect. 8 15
469 320.34 precipitation 0.1 43200 < th dose dependent rect. 8 15
470 320.34 humidity 70.0 43200 > th dose dependent rect. 6 16
484 320.37 radiation 1.0 4320 < th dose independent sin 19 NA
489 320.38 humidity 80.0 1440 > th dose independent rect. 14 7
491 320.38 radiation 1.0 4320 < th dose independent rect. 13 10
507 320.40 radiation 1.0 4320 < th dose independent rect. 14 7
526 320.41 radiation 1.0 720 < th dose dependent rect. 21 23
527 320.42 radiation 1.0 4320 < th dose independent rect. 14 5
551 320.43 radiation 10.0 4320 < th dose dependent rect. 12 11
561 320.44 humidity 90.0 1440 < th dose independent rect. 3 20
562 320.44 radiation 10.0 4320 < th dose dependent rect. 12 9
569 320.45 humidity 80.0 1440 < th dose independent rect. 18 1
577 320.45 radiation 1.0 720 < th dose dependent no NA NA
578 320.45 radiation 10.0 4320 < th dose dependent rect. 12 7
652 320.50 radiation 1.0 4320 > th dose independent rect. 10 19
654 320.50 radiation 1.0 4320 > th dose independent rect. 8 21
733 320.60 radiation 1.0 4320 > th dose independent rect. 10 9
736 320.60 radiation 1.0 4320 > th dose independent rect. 8 11
772 320.61 humidity 90.0 1440 > th dose independent rect. 9 15
784 320.62 radiation 1.0 720 < th dose independent rect. 24 23
836 320.66 radiation 10.0 4320 < th dose dependent sin 17 NA
846 320.67 precipitation 0.1 43200 > th dose dependent rect. 19 6
851 320.68 precipitation 0.1 43200 < th dose independent sin 20 NA
858 320.68 precipitation 0.1 43200 < th dose dependent sin 20 NA
860 320.68 precipitation 0.1 43200 > th dose dependent rect. 19 4
868 320.69 precipitation 0.1 43200 > th dose independent sin 20 NA
871 320.69 precipitation 0.1 43200 < th dose independent rect. 14 11
875 320.69 precipitation 0.1 43200 < th dose dependent rect. 14 11
882 320.70 precipitation 0.1 43200 > th dose independent rect. 14 11
897 320.71 radiation 1.0 4320 > th dose independent rect. 14 15
898 320.71 radiation 10.0 14400 < th dose dependent rect. 14 1
899 320.71 humidity 80.0 1440 > th dose dependent rect. 19 2
907 320.72 humidity 80.0 1440 > th dose independent rect. 18 2
914 320.73 radiation 1.0 720 < th dose independent rect. 18 9
948 320.77 radiation 1.0 4320 > th dose independent sin 19 NA
950 320.77 humidity 80.0 1440 > th dose independent rect. 16 4
983 320.79 wind 5.0 30 < th dose dependent rect. 3 12
986 320.80 humidity 80.0 43200 > th dose independent rect. 16 1