Os10g0116300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : EF-Hand type domain containing protein.
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Os10g0116300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : EF-Hand type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 172.81 | 0.618 | 3.81 | -0.263 | 0.24 | 1.17 | -0.331 | -1.24 | -0.1 | 4.59 | 27.01 | 1158 | -- | -- |
| 173.04 | 0.613 | 3.78 | 0.0108 | 0.244 | 1.03 | -0.343 | -- | -0.0351 | 4.51 | 27.27 | 1142 | -- | -- |
| 173.1 | 0.613 | 3.81 | -0.276 | 0.239 | 1.17 | -- | -1.34 | -0.0981 | 4.61 | 27.06 | 1157 | -- | -- |
| 173.35 | 0.613 | 3.78 | 0.0168 | 0.247 | 1.03 | -- | -- | -0.029 | 4.63 | 27.33 | 1132 | -- | -- |
| 175.91 | 0.618 | 3.83 | -0.313 | -- | 1.21 | -- | -1.4 | -0.123 | -- | 26.71 | 1184 | -- | -- |
| 214.33 | 0.686 | 3.78 | 0.3 | 0.37 | -- | -0.0196 | -- | -0.0514 | 2.66 | -- | -- | -- | -- |
| 214.33 | 0.686 | 3.78 | 0.301 | 0.37 | -- | -- | -- | -0.0513 | 2.66 | -- | -- | -- | -- |
| 176.26 | 0.618 | 3.78 | 0.00318 | -- | 1.06 | -- | -- | -0.0493 | -- | 26.91 | 1175 | -- | -- |
| 173.35 | 0.613 | 3.78 | -- | 0.247 | 1.04 | -- | -- | -0.0336 | 4.64 | 27.29 | 1131 | -- | -- |
| 222.3 | 0.697 | 3.78 | 0.316 | -- | -- | -- | -- | -0.0419 | -- | -- | -- | -- | -- |
| 216.71 | 0.689 | 3.79 | -- | 0.375 | -- | -- | -- | -0.0847 | 2.67 | -- | -- | -- | -- |
| 176.26 | 0.618 | 3.78 | -- | -- | 1.06 | -- | -- | -0.0505 | -- | 26.9 | 1177 | -- | -- |
| 224.94 | 0.7 | 3.79 | -- | -- | -- | -- | -- | -0.077 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 174.83 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 9 |
| 2 | 175.14 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 6 | 176.01 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 5 |
| 12 | 176.40 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 35 | 177.10 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 42 | 177.36 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 50 | 177.62 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 17 |
| 62 | 177.85 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 66 | 177.91 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 12 |
| 78 | 177.99 | temperature | 25 | 1440 | > th | dose dependent | sin | 17 | NA |
| 86 | 178.06 | temperature | 30 | 720 | > th | dose independent | rect. | 16 | 3 |
| 131 | 178.16 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 22 |
| 159 | 178.28 | temperature | 30 | 720 | < th | dose independent | sin | 13 | NA |
| 255 | 178.49 | temperature | 30 | 720 | > th | dose independent | sin | 12 | NA |
| 272 | 178.52 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 296 | 178.61 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 20 |
| 300 | 178.62 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 309 | 178.65 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 14 |
| 312 | 178.65 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 321 | 178.69 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 340 | 178.70 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 7 |
| 342 | 178.70 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 20 |
| 344 | 178.71 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 5 |
| 383 | 178.79 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 390 | 178.83 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 8 |
| 456 | 179.04 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 11 |
| 489 | 179.21 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 11 |
| 516 | 179.28 | temperature | 30 | 1440 | < th | dose independent | sin | 16 | NA |
| 517 | 179.28 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 550 | 179.34 | temperature | 30 | 1440 | > th | dose independent | sin | 15 | NA |
| 563 | 179.40 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 567 | 179.41 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 642 | 179.55 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 823 | 179.61 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 17 |
| 824 | 179.61 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 19 |
| 850 | 179.64 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 859 | 179.64 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 883 | 179.65 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 898 | 179.69 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 910 | 179.72 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 19 |
| 944 | 179.75 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 974 | 179.76 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 20 |
| 985 | 179.77 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |