BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0116300 Os10g0116300|AK106211
         (101 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G44310.1  | chr2:18309285-18309713 FORWARD LENGTH=143           81   1e-16

>AT2G44310.1 | chr2:18309285-18309713 FORWARD LENGTH=143
          Length = 142

 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/86 (47%), Positives = 58/86 (67%), Gaps = 1/86 (1%)

Query: 4   RDVLLSYVEMANELMSLRMLDKHFGDDEAVMSADELVKLYRGLFAWFDRDGSGAVELEEF 63
           +D +LS  E+     S+R+L+ HFG D  V   DEL  LY  +F  FD D SG+V+LEEF
Sbjct: 36  KDGVLSRSELRKAFESMRLLESHFGVD-VVTPQDELTNLYDSIFEKFDTDQSGSVDLEEF 94

Query: 64  RAEMKEVLLAVASGLGFLLVQMVVED 89
           R+EMK+++LA+A GLG   + MV++D
Sbjct: 95  RSEMKKIVLAIADGLGSCPITMVLDD 120



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.139    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,884,181
Number of extensions: 65393
Number of successful extensions: 305
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 304
Number of HSP's successfully gapped: 1
Length of query: 101
Length of database: 11,106,569
Length adjustment: 71
Effective length of query: 30
Effective length of database: 9,160,033
Effective search space: 274800990
Effective search space used: 274800990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 104 (44.7 bits)