BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0497600 Os08g0497600|AK121435
(432 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0497600 WD40-like domain containing protein 902 0.0
Os02g0721600 Similar to WD-repeat protein-like 609 e-174
Os06g0171900 Similar to GAMYB-binding protein (Fragment) 514 e-146
Os08g0408200 Similar to GAMYB-binding protein (Fragment) 449 e-126
Os03g0386000 Similar to WD domain protein-like 437 e-123
AK108953 80 3e-15
Os01g0780400 WD40-like domain containing protein 67 2e-11
>Os08g0497600 WD40-like domain containing protein
Length = 432
Score = 902 bits (2330), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/432 (100%), Positives = 432/432 (100%)
Query: 1 MSRRSGYRAAEQEDRQVDLMGDSDFDDDEYGQPIESKEDTSAVDVKKGKDIQGIPWDNLS 60
MSRRSGYRAAEQEDRQVDLMGDSDFDDDEYGQPIESKEDTSAVDVKKGKDIQGIPWDNLS
Sbjct: 1 MSRRSGYRAAEQEDRQVDLMGDSDFDDDEYGQPIESKEDTSAVDVKKGKDIQGIPWDNLS 60
Query: 61 FSRDRYRKTRMVQYANFENVPNSGKNSEKVCTPVDKGALYYEFQYNTRSVKPTILHFQLR 120
FSRDRYRKTRMVQYANFENVPNSGKNSEKVCTPVDKGALYYEFQYNTRSVKPTILHFQLR
Sbjct: 61 FSRDRYRKTRMVQYANFENVPNSGKNSEKVCTPVDKGALYYEFQYNTRSVKPTILHFQLR 120
Query: 121 NLVWATTRHDVYLLSQRSVLHWSPFASEKHKVIDLQGHITPSEKHQGNVSEGFYQAQVST 180
NLVWATTRHDVYLLSQRSVLHWSPFASEKHKVIDLQGHITPSEKHQGNVSEGFYQAQVST
Sbjct: 121 NLVWATTRHDVYLLSQRSVLHWSPFASEKHKVIDLQGHITPSEKHQGNVSEGFYQAQVST 180
Query: 181 LAVRGNLLVAGGFRGELICKFLDREGISYCCKSTHDDNGITNSLEIFEKPSGSVHFLASN 240
LAVRGNLLVAGGFRGELICKFLDREGISYCCKSTHDDNGITNSLEIFEKPSGSVHFLASN
Sbjct: 181 LAVRGNLLVAGGFRGELICKFLDREGISYCCKSTHDDNGITNSLEIFEKPSGSVHFLASN 240
Query: 241 NDCGVRDFDMEKFQICNNFRFPWAVNHTSLSPDGKLVAIVGDNPEGLIVDTNSGKTVHEL 300
NDCGVRDFDMEKFQICNNFRFPWAVNHTSLSPDGKLVAIVGDNPEGLIVDTNSGKTVHEL
Sbjct: 241 NDCGVRDFDMEKFQICNNFRFPWAVNHTSLSPDGKLVAIVGDNPEGLIVDTNSGKTVHEL 300
Query: 301 RGHLDYSFASAWNPDGRTFATGNQDKTCRIWDIRNLSKSVAVLGGNMGAIRSIRYTSDGR 360
RGHLDYSFASAWNPDGRTFATGNQDKTCRIWDIRNLSKSVAVLGGNMGAIRSIRYTSDGR
Sbjct: 301 RGHLDYSFASAWNPDGRTFATGNQDKTCRIWDIRNLSKSVAVLGGNMGAIRSIRYTSDGR 360
Query: 361 FLAMAEPADFVHIFDVGSGYRRKQVVDFFGEISGISFSPDTEALFIGVHDRTYSSLLQYN 420
FLAMAEPADFVHIFDVGSGYRRKQVVDFFGEISGISFSPDTEALFIGVHDRTYSSLLQYN
Sbjct: 361 FLAMAEPADFVHIFDVGSGYRRKQVVDFFGEISGISFSPDTEALFIGVHDRTYSSLLQYN 420
Query: 421 RLRFYSYLDSAI 432
RLRFYSYLDSAI
Sbjct: 421 RLRFYSYLDSAI 432
>Os02g0721600 Similar to WD-repeat protein-like
Length = 446
Score = 609 bits (1571), Expect = e-174, Method: Compositional matrix adjust.
Identities = 277/411 (67%), Positives = 346/411 (84%)
Query: 20 MGDSDFDDDEYGQPIESKEDTSAVDVKKGKDIQGIPWDNLSFSRDRYRKTRMVQYANFEN 79
M DSD +D+E+GQ + DTS+VD +KGKDIQGIPW+ L+ +RD+YR+TR+ QY N+EN
Sbjct: 34 MRDSDSEDEEHGQSNDKIPDTSSVDARKGKDIQGIPWEKLAITRDKYRQTRLDQYKNYEN 93
Query: 80 VPNSGKNSEKVCTPVDKGALYYEFQYNTRSVKPTILHFQLRNLVWATTRHDVYLLSQRSV 139
+PNSG+ + K C P +KG +YYEF+ NTRSVK TILHFQLRNLVWAT++HDVYL+S SV
Sbjct: 94 MPNSGEAAAKECKPTEKGGMYYEFRRNTRSVKSTILHFQLRNLVWATSKHDVYLMSHFSV 153
Query: 140 LHWSPFASEKHKVIDLQGHITPSEKHQGNVSEGFYQAQVSTLAVRGNLLVAGGFRGELIC 199
LHWS + +++++QGH+ P EKH G++ EGF QVSTL+V+ NLLVAGGF+GELIC
Sbjct: 154 LHWSALSGLDTELMNVQGHVAPREKHPGSLLEGFSGTQVSTLSVKDNLLVAGGFQGELIC 213
Query: 200 KFLDREGISYCCKSTHDDNGITNSLEIFEKPSGSVHFLASNNDCGVRDFDMEKFQICNNF 259
K LDREGIS+CC++T+D+N ITN++EIF SG+VHF+ASNND GVRD+DME+FQ+ +F
Sbjct: 214 KHLDREGISFCCRTTYDENAITNAVEIFNTTSGAVHFMASNNDSGVRDYDMERFQLYKHF 273
Query: 260 RFPWAVNHTSLSPDGKLVAIVGDNPEGLIVDTNSGKTVHELRGHLDYSFASAWNPDGRTF 319
+F W VNHT+LSPD KL IVGD+P GL++D NSGKT+H L+GH DYSFASAW+PDGRTF
Sbjct: 274 QFEWPVNHTALSPDRKLAVIVGDDPNGLLIDANSGKTLHSLKGHFDYSFASAWSPDGRTF 333
Query: 320 ATGNQDKTCRIWDIRNLSKSVAVLGGNMGAIRSIRYTSDGRFLAMAEPADFVHIFDVGSG 379
ATGNQDKTCRIWD RNLSKS+ VL GN+GAIRSIR+TSDG+F++MAEPADFVH+FDVGS
Sbjct: 334 ATGNQDKTCRIWDARNLSKSLHVLRGNLGAIRSIRFTSDGQFMSMAEPADFVHVFDVGSD 393
Query: 380 YRRKQVVDFFGEISGISFSPDTEALFIGVHDRTYSSLLQYNRLRFYSYLDS 430
Y R+Q +DFFGEISG+SFSPDT+ LF+GV DRTY SLLQ+ RL +SYLDS
Sbjct: 394 YTRRQELDFFGEISGMSFSPDTDMLFVGVWDRTYGSLLQFGRLYNHSYLDS 444
>Os06g0171900 Similar to GAMYB-binding protein (Fragment)
Length = 457
Score = 514 bits (1323), Expect = e-146, Method: Compositional matrix adjust.
Identities = 230/392 (58%), Positives = 299/392 (76%)
Query: 39 DTSAVDVKKGKDIQGIPWDNLSFSRDRYRKTRMVQYANFENVPNSGKNSEKVCTPVDKGA 98
DTSA + + GKDIQGIPW+ L +R YRK R+VQY N+EN P SG+ +K+C VDK +
Sbjct: 64 DTSAAEARAGKDIQGIPWERLQITRSDYRKARLVQYKNYENFPQSGELMDKICKQVDKIS 123
Query: 99 LYYEFQYNTRSVKPTILHFQLRNLVWATTRHDVYLLSQRSVLHWSPFASEKHKVIDLQGH 158
YYEF YNTR VKP+ILHFQLRNL+WAT++HDVY +S +V HWS + +V+D GH
Sbjct: 124 KYYEFHYNTRLVKPSILHFQLRNLLWATSKHDVYFMSNSTVGHWSSLSHNLSEVLDFSGH 183
Query: 159 ITPSEKHQGNVSEGFYQAQVSTLAVRGNLLVAGGFRGELICKFLDREGISYCCKSTHDDN 218
+ P++KH G++ EGF QVSTL+V LLVAGGF+GELICK + + +C ++T DN
Sbjct: 184 VAPAQKHPGSLLEGFSGVQVSTLSVNEGLLVAGGFQGELICKVVGDRDVKFCTRTTLSDN 243
Query: 219 GITNSLEIFEKPSGSVHFLASNNDCGVRDFDMEKFQICNNFRFPWAVNHTSLSPDGKLVA 278
ITN+++I SGS+ SNNDCGVR+FDME FQ+ N+F + W VNHTS+SPD KL+A
Sbjct: 244 AITNAIDIHRSASGSLRVTVSNNDCGVREFDMETFQLLNHFSYNWPVNHTSVSPDRKLLA 303
Query: 279 IVGDNPEGLIVDTNSGKTVHELRGHLDYSFASAWNPDGRTFATGNQDKTCRIWDIRNLSK 338
+VGD+ + L+VD+ +GK L GHLDYSFASAW+PDGRTFATGNQDKTCR+WD+RNLS
Sbjct: 304 VVGDDRDALLVDSRNGKVTSTLVGHLDYSFASAWHPDGRTFATGNQDKTCRVWDVRNLST 363
Query: 339 SVAVLGGNMGAIRSIRYTSDGRFLAMAEPADFVHIFDVGSGYRRKQVVDFFGEISGISFS 398
S++VL GN+GAIR IRY+SDG+F+ +EPADFVH++ + Y+++Q +DFFGEISGIS S
Sbjct: 364 SLSVLRGNIGAIRCIRYSSDGQFMLFSEPADFVHVYSAAADYKKRQEIDFFGEISGISLS 423
Query: 399 PDTEALFIGVHDRTYSSLLQYNRLRFYSYLDS 430
PD E+LF+GV DR Y+SLL Y + + YLDS
Sbjct: 424 PDDESLFVGVCDRVYASLLHYRMVHSFGYLDS 455
>Os08g0408200 Similar to GAMYB-binding protein (Fragment)
Length = 444
Score = 449 bits (1156), Expect = e-126, Method: Compositional matrix adjust.
Identities = 207/391 (52%), Positives = 284/391 (72%), Gaps = 2/391 (0%)
Query: 39 DTSAVDVKKGKDIQGIPWDNLSFSRDRYRKTRMVQYANFENVPNSGKNSEKVCTPVDKGA 98
D S DV+ GKD+QGIPW+ + F RD+YR+ +M Y N++N+ + + + K C V+K +
Sbjct: 53 DVSVEDVRDGKDMQGIPWEKIVFRRDQYREMKMKNYRNYQNLSYAREEALKDCKKVEKDS 112
Query: 99 LYYEFQYNTRSVKPTILHFQLRNLVWATTRHDVYLLSQRSVLHWSPFASEKHKVIDLQGH 158
YY+FQYNTR +P+I+HFQLRNLVWATT+HDVY + +SV HWS ++I+
Sbjct: 113 PYYDFQYNTRRARPSIVHFQLRNLVWATTKHDVYTVHNQSVTHWSSLDQTSTELINADDC 172
Query: 159 ITPSEKHQGNVSEGFYQAQVSTLAVRGNLLVAGGFRGELICKFLDREGISYCCKSTHDDN 218
I P K +G+ S+ QV+T+AV +LLV GGF+GELICK L+ +G+ + + T D+N
Sbjct: 173 IIP--KQRGHGSQSVAMVQVTTMAVDDSLLVIGGFQGELICKRLEDDGVLFSTRVTDDEN 230
Query: 219 GITNSLEIFEKPSGSVHFLASNNDCGVRDFDMEKFQICNNFRFPWAVNHTSLSPDGKLVA 278
ITNSLEI++ P+GS +A+NNDC VR FD+E F + ++ FPW+VN S+SP G L A
Sbjct: 231 AITNSLEIYQDPTGSRRLVAANNDCSVRIFDIEYFDLLKHYVFPWSVNSVSVSPKGGLFA 290
Query: 279 IVGDNPEGLIVDTNSGKTVHELRGHLDYSFASAWNPDGRTFATGNQDKTCRIWDIRNLSK 338
++GD+ +GL+VD GK + L+GHLDYSFASAW+PDG ATG+QD TCR+WDIRNLS+
Sbjct: 291 VLGDHEDGLVVDPKCGKAIGALKGHLDYSFASAWHPDGNILATGSQDTTCRLWDIRNLSE 350
Query: 339 SVAVLGGNMGAIRSIRYTSDGRFLAMAEPADFVHIFDVGSGYRRKQVVDFFGEISGISFS 398
SVAVLGG MG+IR I+++SDGRFLA AEP DFVHI+D + Y R +D FGEI+G+SFS
Sbjct: 351 SVAVLGGRMGSIRCIKFSSDGRFLATAEPVDFVHIYDSYADYGRSHEIDLFGEIAGLSFS 410
Query: 399 PDTEALFIGVHDRTYSSLLQYNRLRFYSYLD 429
PD EAL++G+ D TY L+++NR + YL+
Sbjct: 411 PDAEALYVGIADPTYGGLIEFNRRHQHHYLN 441
>Os03g0386000 Similar to WD domain protein-like
Length = 402
Score = 437 bits (1123), Expect = e-123, Method: Compositional matrix adjust.
Identities = 197/385 (51%), Positives = 286/385 (74%), Gaps = 8/385 (2%)
Query: 54 IPWDNLSFSRDRYRKTRMVQYANFENVPNSGKNSEKVCTPVDKGALYYEFQYNTRSVKPT 113
IPW+ L++SR++YR+ R+ QY N+EN+ EK C V++ +Y+F NTR VK T
Sbjct: 20 IPWERLNYSRNQYREMRLRQYKNYENLTMPRDGLEKECKQVERKDTFYDFHLNTRLVKST 79
Query: 114 ILHFQLRNLVWATTRHDVYLLSQRSVLHWSPFASEKHKVIDLQGHITPSEKHQGNVSEGF 173
I+HFQLRNL+WAT++HDVYL+ SV+HWS +V+++ G + PS+ +G +
Sbjct: 80 IVHFQLRNLLWATSKHDVYLMQNYSVMHWSSLLQRGKEVLNVAGQLAPSQNVRGAMP--L 137
Query: 174 YQAQVSTLAVRGNLLVAGGFRGELICKFLDREGISYCCKSTHDDNGITNSLEIFEKPSGS 233
+ Q+ST+AV+GNL+VAGGF+GELICK++D+ G+++C T ++N ITN+++I++ P+G
Sbjct: 138 SRVQISTMAVKGNLMVAGGFQGELICKYVDKPGVAFCTNLTGNNNSITNAVDIYQAPNGG 197
Query: 234 VHFLASNNDCGVRDFDMEKFQICNNFRFPWAVNHTSLSPDGKLVAIVGDNPEGLIVDTNS 293
+NNDC VR FD E+F + ++F FPW+VN+TS+SPDGKL+A++GD+ + LI D+ S
Sbjct: 198 TRITTANNDCVVRTFDTERFSLISHFAFPWSVNNTSVSPDGKLLAVLGDSSDCLIADSQS 257
Query: 294 GKTVHELRGHLDYSFASAWNPDGRTFATGNQDKTCRIWDIRNLSKSVAVLGGNMGAIRSI 353
GK + L+GHLDYSF+SAW+PDGR ATGNQD+TCR+WD+RN+S+SVAVL G +GA+R +
Sbjct: 258 GKEMARLKGHLDYSFSSAWHPDGRVVATGNQDRTCRVWDVRNMSRSVAVLEGRIGAVRGL 317
Query: 354 RYTSDGRFLAMAEPADFVHIFDVGSGYRRKQVVDFFGEISGISFSP------DTEALFIG 407
RY+ DGRFLA +EPADFVH++D +GY Q +D FGEI+G++FSP EALF+
Sbjct: 318 RYSPDGRFLAASEPADFVHVYDAAAGYADAQEIDLFGEIAGVAFSPAGNNGGGGEALFVS 377
Query: 408 VHDRTYSSLLQYNRLRFYSYLDSAI 432
+ DRTY SLL+++R R + YLD +
Sbjct: 378 IADRTYGSLLEFHRRRRHGYLDCYV 402
>AK108953
Length = 331
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 117/270 (43%), Gaps = 29/270 (10%)
Query: 111 KPT-ILHFQLRNLVWAT-TRHDVYLLSQRSVLHWSPFASEKHKVIDLQGHITPSEKHQGN 168
+PT I H+QLR+L+ A T H+ Y + + + + V +L TP+
Sbjct: 21 RPTSIHHWQLRDLISAADTEHEFYCVHDTKIYCYDTDTKQSKLVSNLG--FTPN------ 72
Query: 169 VSEGFYQAQVSTLAVRGNLLVAGGFRGELICKFLDREGISYCCKSTHDDNGITNSLEIFE 228
++ RG+ + AGG GEL + L + C + N+L +
Sbjct: 73 -----------SMTCRGDFVAAGGLHGELEVRQLACGEV---CFKGAVGTTVNNALHLAR 118
Query: 229 KPSGSVHFLASNNDCGVRDFDMEKFQICNNFRFPWAVNHTSLSPDGKLVAIVGD-NPEGL 287
G ND ++ + + + R P +N+ +LSPDG+ + VGD NP L
Sbjct: 119 ISGGEARLFVCCNDNTIKVYKLPSMESATVIRCPCPINYAALSPDGRHLVAVGDCNPTLL 178
Query: 288 IVDTNSG-KTVHELRGHLDYSFASAWNPDGRTFATGNQDKTCRIWDIRNLSKSVAVLGGN 346
T +G + D AWN G +F++ QD +WD R+ +A L +
Sbjct: 179 YQATPTGFVQLASFTEASDVGMCCAWNAHGTSFSSCAQDGAVGVWDQRS-GACIARLSCS 237
Query: 347 MGAIRSIRYTSDGR-FLAMAEPADFVHIFD 375
A R +++++ LA++E + VH+FD
Sbjct: 238 T-ATRCVKFSAAPLDLLAVSEHEERVHLFD 266
>Os01g0780400 WD40-like domain containing protein
Length = 838
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 290 DTNSGKTVHELRGHLDYSFASAWNPDGRTFATGNQDKTCRIWDIRNLSKSVAVLGGNMGA 349
D K V L GH + ++P G FA+G+ D +IWDI+ + G+ GA
Sbjct: 88 DLEEAKVVRSLTGHRSSCTSVEFHPFGEFFASGSSDTDLKIWDIKK-KGCIHTYKGHRGA 146
Query: 350 IRSIRYTSDGRFLAMAEPADFVHIFDVGSGYRRKQVVDF---FGEISGISFSPDTEALFI 406
IR+IR+T DGR++ + V ++D+ +G K + DF G+I I F P L
Sbjct: 147 IRTIRFTPDGRWVVTGGEDNIVKVWDLTAG---KLLHDFKFHSGQIRCIDFHPQEFLLAT 203
Query: 407 GVHDRT 412
G DRT
Sbjct: 204 GSADRT 209
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,361,474
Number of extensions: 678565
Number of successful extensions: 2209
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 2207
Number of HSP's successfully gapped: 8
Length of query: 432
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 328
Effective length of database: 11,605,545
Effective search space: 3806618760
Effective search space used: 3806618760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)