Os08g0408200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to GAMYB-binding protein (Fragment).
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Os08g0408200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to GAMYB-binding protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 139.76 | 0.555 | 6.93 | 1.63 | 0.19 | -3.39 | 0.773 | 1.21 | 0.0229 | 12.8 | 11.37 | 68 | 7.56 | 21 |
| 141.23 | 0.553 | 6.93 | 1.56 | 0.191 | -3.36 | 0.881 | -- | 0.0153 | 12.9 | 11.68 | 68 | 7.55 | 21 |
| 141.61 | 0.554 | 6.92 | 1.69 | 0.197 | -3.35 | -- | 1.8 | 0.0225 | 12 | 11.52 | 58 | 7.62 | 21 |
| 145.35 | 0.562 | 6.94 | 1.53 | 0.204 | -3.31 | -- | -- | -0.00454 | 11.9 | 11.72 | 59 | 7.6 | 21 |
| 143.44 | 0.558 | 6.92 | 1.68 | -- | -3.27 | -- | 2.02 | 0.0274 | -- | 10.77 | 60 | 7.65 | 20.9 |
| 311.98 | 0.828 | 6.97 | 0.995 | 1.52 | -- | -0.478 | -- | -0.242 | 5.14 | -- | -- | -- | -- |
| 312.55 | 0.828 | 6.97 | 0.995 | 1.52 | -- | -- | -- | -0.239 | 5.17 | -- | -- | -- | -- |
| 147.25 | 0.565 | 6.94 | 1.54 | -- | -3.27 | -- | -- | 0.00771 | -- | 10.95 | 70 | 7.6 | 21 |
| 202.41 | 0.663 | 6.98 | -- | 0.0702 | -3.05 | -- | -- | -0.228 | 9.08 | 7.295 | 69 | 7.53 | 20.9 |
| 433.72 | 0.973 | 6.99 | 1.05 | -- | -- | -- | -- | -0.201 | -- | -- | -- | -- | -- |
| 338.66 | 0.861 | 6.99 | -- | 1.54 | -- | -- | -- | -0.35 | 5.15 | -- | -- | -- | -- |
| 202.62 | 0.663 | 7 | -- | -- | -3.03 | -- | -- | -0.249 | -- | 6.901 | 67 | 7.59 | 20.9 |
| 462.74 | 1 | 7.01 | -- | -- | -- | -- | -- | -0.317 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 150.99 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 21 |
| 4 | 152.52 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 36 | 175.24 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 39 | 176.05 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 19 |
| 84 | 185.67 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 128 | 191.54 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 17 |
| 147 | 193.06 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 19 |
| 173 | 196.58 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 5 | 15 |
| 195 | 198.61 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 219 | 200.40 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 230 | 201.39 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 238 | 202.15 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 5 | 13 |
| 256 | 203.82 | temperature | 20.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 284 | 205.95 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 304 | 207.07 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 307 | 207.30 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 310 | 207.34 | temperature | 20.0 | 10 | > th | dose independent | rect. | 8 | 21 |
| 329 | 208.24 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 332 | 208.43 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 339 | 208.61 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 373 | 210.41 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 424 | 212.49 | humidity | 70.0 | 10 | > th | dose independent | rect. | 5 | 15 |
| 430 | 212.72 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 21 |
| 457 | 213.63 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 15 |
| 478 | 214.51 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 482 | 214.69 | radiation | 1.0 | 270 | > th | dose independent | sin | 1 | NA |
| 483 | 214.70 | temperature | 30.0 | 30 | < th | dose dependent | no | NA | NA |
| 486 | 214.72 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 558 | 216.59 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 594 | 217.46 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 596 | 217.46 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 610 | 217.85 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 632 | 218.46 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 637 | 218.53 | radiation | 10.0 | 270 | < th | dose dependent | sin | 2 | NA |
| 655 | 218.77 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 656 | 218.80 | radiation | 1.0 | 270 | < th | dose independent | sin | 2 | NA |
| 676 | 219.03 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 691 | 219.38 | temperature | 10.0 | 10 | > th | dose dependent | no | NA | NA |
| 704 | 219.63 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 724 | 220.16 | wind | 7.0 | 90 | < th | dose independent | rect. | 8 | 20 |
| 735 | 220.29 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 749 | 220.49 | humidity | 80.0 | 30 | > th | dose independent | rect. | 5 | 13 |
| 783 | 221.09 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 794 | 221.21 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 5 |
| 840 | 221.90 | temperature | 30.0 | 270 | < th | dose independent | rect. | 14 | 17 |
| 879 | 222.91 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 887 | 223.04 | radiation | 20.0 | 30 | < th | dose independent | rect. | 5 | 15 |
| 889 | 223.07 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 890 | 223.08 | wind | 7.0 | 10 | < th | dose independent | rect. | 8 | 21 |
| 902 | 223.26 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 13 | 18 |
| 963 | 224.36 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 20 |
| 965 | 224.36 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 20 |
| 981 | 224.57 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 986 | 224.70 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 5 | 9 |
| 989 | 224.74 | temperature | 25.0 | 30 | < th | dose independent | rect. | 5 | 16 |