BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0408200 Os08g0408200|AK111715
(444 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0408200 Similar to GAMYB-binding protein (Fragment) 886 0.0
Os03g0386000 Similar to WD domain protein-like 460 e-130
Os08g0497600 WD40-like domain containing protein 450 e-126
Os02g0721600 Similar to WD-repeat protein-like 446 e-125
Os06g0171900 Similar to GAMYB-binding protein (Fragment) 439 e-123
AK108953 74 2e-13
>Os08g0408200 Similar to GAMYB-binding protein (Fragment)
Length = 444
Score = 886 bits (2289), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/422 (100%), Positives = 422/422 (100%)
Query: 23 DQGENNPFGAANHDELIASLLHNNQENPLTDVSVEDVRDGKDMQGIPWEKIVFRRDQYRE 82
DQGENNPFGAANHDELIASLLHNNQENPLTDVSVEDVRDGKDMQGIPWEKIVFRRDQYRE
Sbjct: 23 DQGENNPFGAANHDELIASLLHNNQENPLTDVSVEDVRDGKDMQGIPWEKIVFRRDQYRE 82
Query: 83 MKMKNYRNYQNLSYAREEALKDCKKVEKDSPYYDFQYNTRRARPSIVHFQLRNLVWATTK 142
MKMKNYRNYQNLSYAREEALKDCKKVEKDSPYYDFQYNTRRARPSIVHFQLRNLVWATTK
Sbjct: 83 MKMKNYRNYQNLSYAREEALKDCKKVEKDSPYYDFQYNTRRARPSIVHFQLRNLVWATTK 142
Query: 143 HDVYTVHNQSVTHWSSLDQTSTELINADDCIIPKQRGHGSQSVAMVQVTTMAVDDSLLVI 202
HDVYTVHNQSVTHWSSLDQTSTELINADDCIIPKQRGHGSQSVAMVQVTTMAVDDSLLVI
Sbjct: 143 HDVYTVHNQSVTHWSSLDQTSTELINADDCIIPKQRGHGSQSVAMVQVTTMAVDDSLLVI 202
Query: 203 GGFQGELICKRLEDDGVLFSTRVTDDENAITNSLEIYQDPTGSRRLVAANNDCSVRIFDI 262
GGFQGELICKRLEDDGVLFSTRVTDDENAITNSLEIYQDPTGSRRLVAANNDCSVRIFDI
Sbjct: 203 GGFQGELICKRLEDDGVLFSTRVTDDENAITNSLEIYQDPTGSRRLVAANNDCSVRIFDI 262
Query: 263 EYFDLLKHYVFPWSVNSVSVSPKGGLFAVLGDHEDGLVVDPKCGKAIGALKGHLDYSFAS 322
EYFDLLKHYVFPWSVNSVSVSPKGGLFAVLGDHEDGLVVDPKCGKAIGALKGHLDYSFAS
Sbjct: 263 EYFDLLKHYVFPWSVNSVSVSPKGGLFAVLGDHEDGLVVDPKCGKAIGALKGHLDYSFAS 322
Query: 323 AWHPDGNILATGSQDTTCRLWDIRNLSESVAVLGGRMGSIRCIKFSSDGRFLATAEPVDF 382
AWHPDGNILATGSQDTTCRLWDIRNLSESVAVLGGRMGSIRCIKFSSDGRFLATAEPVDF
Sbjct: 323 AWHPDGNILATGSQDTTCRLWDIRNLSESVAVLGGRMGSIRCIKFSSDGRFLATAEPVDF 382
Query: 383 VHIYDSYADYGRSHEIDLFGEIAGLSFSPDAEALYVGIADPTYGGLIEFNRRHQHHYLNC 442
VHIYDSYADYGRSHEIDLFGEIAGLSFSPDAEALYVGIADPTYGGLIEFNRRHQHHYLNC
Sbjct: 383 VHIYDSYADYGRSHEIDLFGEIAGLSFSPDAEALYVGIADPTYGGLIEFNRRHQHHYLNC 442
Query: 443 MW 444
MW
Sbjct: 443 MW 444
>Os03g0386000 Similar to WD domain protein-like
Length = 402
Score = 460 bits (1184), Expect = e-130, Method: Compositional matrix adjust.
Identities = 213/381 (55%), Positives = 282/381 (74%), Gaps = 6/381 (1%)
Query: 68 IPWEKIVFRRDQYREMKMKNYRNYQNLSYAREEALKDCKKVEKDSPYYDFQYNTRRARPS 127
IPWE++ + R+QYREM+++ Y+NY+NL+ R+ K+CK+VE+ +YDF NTR + +
Sbjct: 20 IPWERLNYSRNQYREMRLRQYKNYENLTMPRDGLEKECKQVERKDTFYDFHLNTRLVKST 79
Query: 128 IVHFQLRNLVWATTKHDVYTVHNQSVTHWSSLDQTSTELINADDCIIPKQRGHGSQSVAM 187
IVHFQLRNL+WAT+KHDVY + N SV HWSSL Q E++N + P Q G+ ++
Sbjct: 80 IVHFQLRNLLWATSKHDVYLMQNYSVMHWSSLLQRGKEVLNVAGQLAPSQNVRGAMPLSR 139
Query: 188 VQVTTMAVDDSLLVIGGFQGELICKRLEDDGVLFSTRVTDDENAITNSLEIYQDPTGSRR 247
VQ++TMAV +L+V GGFQGELICK ++ GV F T +T + N+ITN+++IYQ P G R
Sbjct: 140 VQISTMAVKGNLMVAGGFQGELICKYVDKPGVAFCTNLTGNNNSITNAVDIYQAPNGGTR 199
Query: 248 LVAANNDCSVRIFDIEYFDLLKHYVFPWSVNSVSVSPKGGLFAVLGDHEDGLVVDPKCGK 307
+ ANNDC VR FD E F L+ H+ FPWSVN+ SVSP G L AVLGD D L+ D + GK
Sbjct: 200 ITTANNDCVVRTFDTERFSLISHFAFPWSVNNTSVSPDGKLLAVLGDSSDCLIADSQSGK 259
Query: 308 AIGALKGHLDYSFASAWHPDGNILATGSQDTTCRLWDIRNLSESVAVLGGRMGSIRCIKF 367
+ LKGHLDYSF+SAWHPDG ++ATG+QD TCR+WD+RN+S SVAVL GR+G++R +++
Sbjct: 260 EMARLKGHLDYSFSSAWHPDGRVVATGNQDRTCRVWDVRNMSRSVAVLEGRIGAVRGLRY 319
Query: 368 SSDGRFLATAEPVDFVHIYDSYADYGRSHEIDLFGEIAGLSFSP------DAEALYVGIA 421
S DGRFLA +EP DFVH+YD+ A Y + EIDLFGEIAG++FSP EAL+V IA
Sbjct: 320 SPDGRFLAASEPADFVHVYDAAAGYADAQEIDLFGEIAGVAFSPAGNNGGGGEALFVSIA 379
Query: 422 DPTYGGLIEFNRRHQHHYLNC 442
D TYG L+EF+RR +H YL+C
Sbjct: 380 DRTYGSLLEFHRRRRHGYLDC 400
>Os08g0497600 WD40-like domain containing protein
Length = 432
Score = 450 bits (1157), Expect = e-126, Method: Compositional matrix adjust.
Identities = 207/391 (52%), Positives = 284/391 (72%), Gaps = 2/391 (0%)
Query: 53 DVSVEDVRDGKDMQGIPWEKIVFRRDQYREMKMKNYRNYQNLSYAREEALKDCKKVEKDS 112
D S DV+ GKD+QGIPW+ + F RD+YR+ +M Y N++N+ + + + K C V+K +
Sbjct: 39 DTSAVDVKKGKDIQGIPWDNLSFSRDRYRKTRMVQYANFENVPNSGKNSEKVCTPVDKGA 98
Query: 113 PYYDFQYNTRRARPSIVHFQLRNLVWATTKHDVYTVHNQSVTHWSSLDQTSTELINADDC 172
YY+FQYNTR +P+I+HFQLRNLVWATT+HDVY + +SV HWS ++I+
Sbjct: 99 LYYEFQYNTRSVKPTILHFQLRNLVWATTRHDVYLLSQRSVLHWSPFASEKHKVIDLQGH 158
Query: 173 IIP--KQRGHGSQSVAMVQVTTMAVDDSLLVIGGFQGELICKRLEDDGVLFSTRVTDDEN 230
I P K +G+ S+ QV+T+AV +LLV GGF+GELICK L+ +G+ + + T D+N
Sbjct: 159 ITPSEKHQGNVSEGFYQAQVSTLAVRGNLLVAGGFRGELICKFLDREGISYCCKSTHDDN 218
Query: 231 AITNSLEIYQDPTGSRRLVAANNDCSVRIFDIEYFDLLKHYVFPWSVNSVSVSPKGGLFA 290
ITNSLEI++ P+GS +A+NNDC VR FD+E F + ++ FPW+VN S+SP G L A
Sbjct: 219 GITNSLEIFEKPSGSVHFLASNNDCGVRDFDMEKFQICNNFRFPWAVNHTSLSPDGKLVA 278
Query: 291 VLGDHEDGLVVDPKCGKAIGALKGHLDYSFASAWHPDGNILATGSQDTTCRLWDIRNLSE 350
++GD+ +GL+VD GK + L+GHLDYSFASAW+PDG ATG+QD TCR+WDIRNLS+
Sbjct: 279 IVGDNPEGLIVDTNSGKTVHELRGHLDYSFASAWNPDGRTFATGNQDKTCRIWDIRNLSK 338
Query: 351 SVAVLGGRMGSIRCIKFSSDGRFLATAEPVDFVHIYDSYADYGRSHEIDLFGEIAGLSFS 410
SVAVLGG MG+IR I+++SDGRFLA AEP DFVHI+D + Y R +D FGEI+G+SFS
Sbjct: 339 SVAVLGGNMGAIRSIRYTSDGRFLAMAEPADFVHIFDVGSGYRRKQVVDFFGEISGISFS 398
Query: 411 PDAEALYVGIADPTYGGLIEFNRRHQHHYLN 441
PD EAL++G+ D TY L+++NR + YL+
Sbjct: 399 PDTEALFIGVHDRTYSSLLQYNRLRFYSYLD 429
>Os02g0721600 Similar to WD-repeat protein-like
Length = 446
Score = 446 bits (1146), Expect = e-125, Method: Compositional matrix adjust.
Identities = 203/402 (50%), Positives = 283/402 (70%), Gaps = 2/402 (0%)
Query: 44 HNNQENPLTDVSVEDVRDGKDMQGIPWEKIVFRRDQYREMKMKNYRNYQNLSYAREEALK 103
H + + D S D R GKD+QGIPWEK+ RD+YR+ ++ Y+NY+N+ + E A K
Sbjct: 44 HGQSNDKIPDTSSVDARKGKDIQGIPWEKLAITRDKYRQTRLDQYKNYENMPNSGEAAAK 103
Query: 104 DCKKVEKDSPYYDFQYNTRRARPSIVHFQLRNLVWATTKHDVYTVHNQSVTHWSSLDQTS 163
+CK EK YY+F+ NTR + +I+HFQLRNLVWAT+KHDVY + + SV HWS+L
Sbjct: 104 ECKPTEKGGMYYEFRRNTRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVLHWSALSGLD 163
Query: 164 TELINADDCIIPKQRGHGS--QSVAMVQVTTMAVDDSLLVIGGFQGELICKRLEDDGVLF 221
TEL+N + P+++ GS + + QV+T++V D+LLV GGFQGELICK L+ +G+ F
Sbjct: 164 TELMNVQGHVAPREKHPGSLLEGFSGTQVSTLSVKDNLLVAGGFQGELICKHLDREGISF 223
Query: 222 STRVTDDENAITNSLEIYQDPTGSRRLVAANNDCSVRIFDIEYFDLLKHYVFPWSVNSVS 281
R T DENAITN++EI+ +G+ +A+NND VR +D+E F L KH+ F W VN +
Sbjct: 224 CCRTTYDENAITNAVEIFNTTSGAVHFMASNNDSGVRDYDMERFQLYKHFQFEWPVNHTA 283
Query: 282 VSPKGGLFAVLGDHEDGLVVDPKCGKAIGALKGHLDYSFASAWHPDGNILATGSQDTTCR 341
+SP L ++GD +GL++D GK + +LKGH DYSFASAW PDG ATG+QD TCR
Sbjct: 284 LSPDRKLAVIVGDDPNGLLIDANSGKTLHSLKGHFDYSFASAWSPDGRTFATGNQDKTCR 343
Query: 342 LWDIRNLSESVAVLGGRMGSIRCIKFSSDGRFLATAEPVDFVHIYDSYADYGRSHEIDLF 401
+WD RNLS+S+ VL G +G+IR I+F+SDG+F++ AEP DFVH++D +DY R E+D F
Sbjct: 344 IWDARNLSKSLHVLRGNLGAIRSIRFTSDGQFMSMAEPADFVHVFDVGSDYTRRQELDFF 403
Query: 402 GEIAGLSFSPDAEALYVGIADPTYGGLIEFNRRHQHHYLNCM 443
GEI+G+SFSPD + L+VG+ D TYG L++F R + H YL+ +
Sbjct: 404 GEISGMSFSPDTDMLFVGVWDRTYGSLLQFGRLYNHSYLDSL 445
>Os06g0171900 Similar to GAMYB-binding protein (Fragment)
Length = 457
Score = 439 bits (1128), Expect = e-123, Method: Compositional matrix adjust.
Identities = 204/393 (51%), Positives = 276/393 (70%), Gaps = 2/393 (0%)
Query: 51 LTDVSVEDVRDGKDMQGIPWEKIVFRRDQYREMKMKNYRNYQNLSYAREEALKDCKKVEK 110
+TD S + R GKD+QGIPWE++ R YR+ ++ Y+NY+N + E K CK+V+K
Sbjct: 62 ITDTSAAEARAGKDIQGIPWERLQITRSDYRKARLVQYKNYENFPQSGELMDKICKQVDK 121
Query: 111 DSPYYDFQYNTRRARPSIVHFQLRNLVWATTKHDVYTVHNQSVTHWSSLDQTSTELINAD 170
S YY+F YNTR +PSI+HFQLRNL+WAT+KHDVY + N +V HWSSL +E+++
Sbjct: 122 ISKYYEFHYNTRLVKPSILHFQLRNLLWATSKHDVYFMSNSTVGHWSSLSHNLSEVLDFS 181
Query: 171 DCIIPKQRGHGS--QSVAMVQVTTMAVDDSLLVIGGFQGELICKRLEDDGVLFSTRVTDD 228
+ P Q+ GS + + VQV+T++V++ LLV GGFQGELICK + D V F TR T
Sbjct: 182 GHVAPAQKHPGSLLEGFSGVQVSTLSVNEGLLVAGGFQGELICKVVGDRDVKFCTRTTLS 241
Query: 229 ENAITNSLEIYQDPTGSRRLVAANNDCSVRIFDIEYFDLLKHYVFPWSVNSVSVSPKGGL 288
+NAITN+++I++ +GS R+ +NNDC VR FD+E F LL H+ + W VN SVSP L
Sbjct: 242 DNAITNAIDIHRSASGSLRVTVSNNDCGVREFDMETFQLLNHFSYNWPVNHTSVSPDRKL 301
Query: 289 FAVLGDHEDGLVVDPKCGKAIGALKGHLDYSFASAWHPDGNILATGSQDTTCRLWDIRNL 348
AV+GD D L+VD + GK L GHLDYSFASAWHPDG ATG+QD TCR+WD+RNL
Sbjct: 302 LAVVGDDRDALLVDSRNGKVTSTLVGHLDYSFASAWHPDGRTFATGNQDKTCRVWDVRNL 361
Query: 349 SESVAVLGGRMGSIRCIKFSSDGRFLATAEPVDFVHIYDSYADYGRSHEIDLFGEIAGLS 408
S S++VL G +G+IRCI++SSDG+F+ +EP DFVH+Y + ADY + EID FGEI+G+S
Sbjct: 362 STSLSVLRGNIGAIRCIRYSSDGQFMLFSEPADFVHVYSAAADYKKRQEIDFFGEISGIS 421
Query: 409 FSPDAEALYVGIADPTYGGLIEFNRRHQHHYLN 441
SPD E+L+VG+ D Y L+ + H YL+
Sbjct: 422 LSPDDESLFVGVCDRVYASLLHYRMVHSFGYLD 454
>AK108953
Length = 331
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 116/269 (43%), Gaps = 27/269 (10%)
Query: 125 RP-SIVHFQLRNLVWAT-TKHDVYTVHNQSVTHWSSLDQTSTELINADDCIIPKQRGHGS 182
RP SI H+QLR+L+ A T+H+ Y VH+ + + + D ++L++ G
Sbjct: 21 RPTSIHHWQLRDLISAADTEHEFYCVHDTKIYCYDT-DTKQSKLVS--------NLGFTP 71
Query: 183 QSVAMVQVTTMAVDDSLLVIGGFQGELICKRLEDDGVLFSTRVTDDENAITNSLEIYQDP 242
S M + GG GEL ++L V F V + N+L + +
Sbjct: 72 NS--------MTCRGDFVAAGGLHGELEVRQLACGEVCFKGAVG---TTVNNALHLARIS 120
Query: 243 TGSRRLVAANNDCSVRIFDIEYFDLLKHYVFPWSVNSVSVSPKGGLFAVLGDHEDGLV-- 300
G RL ND +++++ + + P +N ++SP G +GD L+
Sbjct: 121 GGEARLFVCCNDNTIKVYKLPSMESATVIRCPCPINYAALSPDGRHLVAVGDCNPTLLYQ 180
Query: 301 VDPKCGKAIGALKGHLDYSFASAWHPDGNILATGSQDTTCRLWDIRNLSESVAVLGGRMG 360
P + + D AW+ G ++ +QD +WD R+ +A L
Sbjct: 181 ATPTGFVQLASFTEASDVGMCCAWNAHGTSFSSCAQDGAVGVWDQRS-GACIARLSCSTA 239
Query: 361 SIRCIKFSSDGR-FLATAEPVDFVHIYDS 388
+ RC+KFS+ LA +E + VH++D+
Sbjct: 240 T-RCVKFSAAPLDLLAVSEHEERVHLFDA 267
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,030,050
Number of extensions: 635123
Number of successful extensions: 1958
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1974
Number of HSP's successfully gapped: 6
Length of query: 444
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 340
Effective length of database: 11,605,545
Effective search space: 3945885300
Effective search space used: 3945885300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)