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Os06g0171900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to GAMYB-binding protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14 (0.0242) R2 : 0.601
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.43 (0.0581) R2dC : 0.534 R2C : 0.513
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.447 (0.0509) R2dN8 : 0.0872 R2N8 : 0.0668
σ : 0.457
deviance : 95.29
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C
peak time of C : 22.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
69.78 0.392 13.9 0.695 0.896 0.771 0.945 -1.37 0.572 21.4 28.57 75 -- --
74.05 0.401 13.9 0.669 0.96 0.882 -0.0868 -- 0.568 21.6 50 68 -- --
71.34 0.393 13.9 0.657 0.894 0.778 -- -0.759 0.562 21.5 30 68 -- --
73.55 0.399 13.9 0.697 0.886 0.773 -- -- 0.569 21.3 28.55 69 -- --
90.03 0.444 13.9 0.671 -- 1.16 -- -0.515 0.524 -- 15.85 20 -- --
83.59 0.429 14 0.657 1.43 -- -0.162 -- 0.521 22.7 -- -- -- --
83.7 0.428 14 0.663 1.43 -- -- -- 0.521 22.7 -- -- -- --
90.37 0.443 13.9 0.646 -- 1.12 -- -- 0.545 -- 10.75 9 -- --
85.66 0.431 14 -- 1.02 0.894 -- -- 0.479 21.8 70.04 77 -- --
209.51 0.676 13.9 0.691 -- -- -- -- 0.529 -- -- -- -- --
95.29 0.457 14 -- 1.43 -- -- -- 0.447 22.7 -- -- -- --
101.21 0.469 13.9 -- -- 1.12 -- -- 0.479 -- 10 9 -- --
222.12 0.696 13.9 -- -- -- -- -- 0.453 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 67.27 humidity 80 10 > th dose independent rect. 6 12
3 67.55 humidity 70 1440 > th dose independent rect. 11 1
4 67.58 humidity 90 1440 < th dose dependent rect. 2 11
6 67.69 humidity 80 1440 < th dose dependent rect. 20 16
7 67.72 radiation 20 90 < th dose dependent rect. 5 23
11 67.80 humidity 70 1440 > th dose dependent rect. 11 1
40 68.15 humidity 70 10 > th dose dependent rect. 6 12
43 68.20 humidity 80 1440 < th dose dependent sin 7 NA
44 68.20 humidity 90 1440 < th dose dependent rect. 11 1
49 68.27 humidity 80 1440 < th dose independent rect. 6 6
50 68.28 radiation 20 90 < th dose dependent rect. 6 11
63 68.44 humidity 80 1440 > th dose independent rect. 2 10
66 68.48 humidity 80 1440 > th dose independent rect. 6 6
68 68.49 humidity 70 10 > th dose dependent rect. 6 10
72 68.53 humidity 70 10 > th dose dependent rect. 6 14
76 68.60 humidity 80 1440 < th dose independent rect. 2 10
77 68.62 humidity 90 1440 < th dose dependent rect. 9 3
88 68.73 humidity 70 1440 > th dose independent rect. 19 18
122 68.95 humidity 70 1440 > th dose independent rect. 9 4
156 69.11 humidity 50 1440 > th dose dependent rect. 3 11
187 69.35 humidity 70 1440 < th dose independent rect. 11 1
197 69.37 humidity 70 1440 > th dose independent sin 8 NA
318 69.85 humidity 70 1440 < th dose independent rect. 19 18
377 70.09 radiation 30 90 < th dose dependent rect. 11 23
401 70.15 humidity 70 1440 < th dose independent sin 8 NA
441 70.31 humidity 50 1440 > th dose dependent sin 4 NA
444 70.31 radiation 30 90 < th dose dependent rect. 21 23
449 70.34 humidity 80 1440 < th dose independent sin 4 NA
455 70.34 humidity 70 90 > th dose dependent rect. 5 23
457 70.35 temperature 20 720 < th dose independent rect. 24 4
458 70.35 temperature 20 720 > th dose independent rect. 23 8
511 70.47 humidity 80 10 < th dose independent sin 0 NA
545 70.55 humidity 90 10 < th dose dependent rect. 9 23
574 70.63 radiation 30 90 < th dose dependent no NA NA
576 70.64 radiation 10 90 > th dose independent rect. 9 23
585 70.67 humidity 90 90 < th dose dependent rect. 19 22
596 70.71 temperature 20 720 < th dose independent rect. 24 7
638 70.78 humidity 80 10 > th dose independent sin 23 NA
660 70.85 humidity 90 10 < th dose dependent rect. 7 23
673 70.88 humidity 80 10 > th dose independent rect. 23 21
730 71.01 humidity 90 10 < th dose dependent rect. 7 21
767 71.10 humidity 80 90 < th dose independent rect. 1 16
777 71.12 humidity 90 10 < th dose dependent rect. 7 19
788 71.15 humidity 90 10 < th dose dependent rect. 7 17
808 71.18 radiation 20 90 < th dose independent rect. 5 23
835 71.23 humidity 80 90 < th dose independent rect. 5 12
842 71.23 humidity 50 10 > th dose dependent rect. 23 23
853 71.28 temperature 20 720 > th dose independent rect. 23 5
854 71.28 humidity 90 10 < th dose dependent sin 0 NA
858 71.28 humidity 50 10 > th dose dependent rect. 13 23
870 71.31 radiation 30 90 < th dose dependent rect. 17 23
872 71.32 humidity 90 90 < th dose dependent sin 2 NA
877 71.32 humidity 90 10 < th dose dependent rect. 20 22
884 71.33 radiation 1 90 > th dose dependent rect. 4 14
902 71.34 radiation 1 90 > th dose dependent no NA NA
966 71.35 humidity 80 720 > th dose independent rect. 6 16
983 71.38 radiation 30 90 < th dose dependent sin 2 NA
985 71.38 radiation 1 90 > th dose dependent rect. 7 23
986 71.39 temperature 15 720 > th dose dependent rect. 23 8
987 71.39 humidity 50 10 > th dose dependent rect. 21 23