BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0171900 Os06g0171900|AK100886
(457 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0171900 Similar to GAMYB-binding protein (Fragment) 893 0.0
Os02g0721600 Similar to WD-repeat protein-like 547 e-156
Os08g0497600 WD40-like domain containing protein 513 e-145
Os03g0386000 Similar to WD domain protein-like 452 e-127
Os08g0408200 Similar to GAMYB-binding protein (Fragment) 439 e-123
AK108953 70 4e-12
>Os06g0171900 Similar to GAMYB-binding protein (Fragment)
Length = 457
Score = 893 bits (2308), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/444 (97%), Positives = 431/444 (97%)
Query: 14 YMAEDDPDGAASEDGDMDVEVGGEESQAXXXXXXXXXXXXXEYALLTRITDTSAAEARAG 73
YMAEDDPDGAASEDGDMDVEVGGEESQA EYALLTRITDTSAAEARAG
Sbjct: 14 YMAEDDPDGAASEDGDMDVEVGGEESQARDGDRRDGGDGDDEYALLTRITDTSAAEARAG 73
Query: 74 KDIQGIPWERLQITRSDYRKARLVQYKNYENFPQSGELMDKICKQVDKISKYYEFHYNTR 133
KDIQGIPWERLQITRSDYRKARLVQYKNYENFPQSGELMDKICKQVDKISKYYEFHYNTR
Sbjct: 74 KDIQGIPWERLQITRSDYRKARLVQYKNYENFPQSGELMDKICKQVDKISKYYEFHYNTR 133
Query: 134 LVKPSILHFQLRNLLWATSKHDVYFMSNSTVGHWSSLSHNLSEVLDFSGHVAPAQKHPGS 193
LVKPSILHFQLRNLLWATSKHDVYFMSNSTVGHWSSLSHNLSEVLDFSGHVAPAQKHPGS
Sbjct: 134 LVKPSILHFQLRNLLWATSKHDVYFMSNSTVGHWSSLSHNLSEVLDFSGHVAPAQKHPGS 193
Query: 194 LLEGFSGVQVSTLSVNEGLLVAGGFQGELICKVVGDRDVKFCTRTTLSDNAITNAIDIHR 253
LLEGFSGVQVSTLSVNEGLLVAGGFQGELICKVVGDRDVKFCTRTTLSDNAITNAIDIHR
Sbjct: 194 LLEGFSGVQVSTLSVNEGLLVAGGFQGELICKVVGDRDVKFCTRTTLSDNAITNAIDIHR 253
Query: 254 SASGSLRVTVSNNDCGVREFDMETFQLLNHFSYNWPVNHTSVSPDRKLLAVVGDDRDALL 313
SASGSLRVTVSNNDCGVREFDMETFQLLNHFSYNWPVNHTSVSPDRKLLAVVGDDRDALL
Sbjct: 254 SASGSLRVTVSNNDCGVREFDMETFQLLNHFSYNWPVNHTSVSPDRKLLAVVGDDRDALL 313
Query: 314 VDSRNGKVTSTLVGHLDYSFASAWHPDGRTFATGNQDKTCRVWDVRNLSTSLSVLRGNIG 373
VDSRNGKVTSTLVGHLDYSFASAWHPDGRTFATGNQDKTCRVWDVRNLSTSLSVLRGNIG
Sbjct: 314 VDSRNGKVTSTLVGHLDYSFASAWHPDGRTFATGNQDKTCRVWDVRNLSTSLSVLRGNIG 373
Query: 374 AIRCIRYSSDGQFMLFSEPADFVHVYSAAADYKKRQEIDFFGEISGISLSPDDESLFVGV 433
AIRCIRYSSDGQFMLFSEPADFVHVYSAAADYKKRQEIDFFGEISGISLSPDDESLFVGV
Sbjct: 374 AIRCIRYSSDGQFMLFSEPADFVHVYSAAADYKKRQEIDFFGEISGISLSPDDESLFVGV 433
Query: 434 CDRVYASLLHYRMVHSFGYLDSFM 457
CDRVYASLLHYRMVHSFGYLDSFM
Sbjct: 434 CDRVYASLLHYRMVHSFGYLDSFM 457
>Os02g0721600 Similar to WD-repeat protein-like
Length = 446
Score = 547 bits (1410), Expect = e-156, Method: Compositional matrix adjust.
Identities = 255/396 (64%), Positives = 306/396 (77%)
Query: 61 RITDTSAAEARAGKDIQGIPWERLQITRSDYRKARLVQYKNYENFPQSGELMDKICKQVD 120
+I DTS+ +AR GKDIQGIPWE+L ITR YR+ RL QYKNYEN P SGE K CK +
Sbjct: 50 KIPDTSSVDARKGKDIQGIPWEKLAITRDKYRQTRLDQYKNYENMPNSGEAAAKECKPTE 109
Query: 121 KISKYYEFHYNTRLVKPSILHFQLRNLLWATSKHDVYFMSNSTVGHWSSLSHNLSEVLDF 180
K YYEF NTR VK +ILHFQLRNL+WATSKHDVY MS+ +V HWS+LS +E+++
Sbjct: 110 KGGMYYEFRRNTRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVLHWSALSGLDTELMNV 169
Query: 181 SGHVAPAQKHPGSLLEGFSGVQVSTLSVNEGLLVAGGFQGELICKVVGDRDVKFCTRTTL 240
GHVAP +KHPGSLLEGFSG QVSTLSV + LLVAGGFQGELICK + + FC RTT
Sbjct: 170 QGHVAPREKHPGSLLEGFSGTQVSTLSVKDNLLVAGGFQGELICKHLDREGISFCCRTTY 229
Query: 241 SDNAITNAIDIHRSASGSLRVTVSNNDCGVREFDMETFQLLNHFSYNWPVNHTSVSPDRK 300
+NAITNA++I + SG++ SNND GVR++DME FQL HF + WPVNHT++SPDRK
Sbjct: 230 DENAITNAVEIFNTTSGAVHFMASNNDSGVRDYDMERFQLYKHFQFEWPVNHTALSPDRK 289
Query: 301 LLAVVGDDRDALLVDSRNGKVTSTLVGHLDYSFASAWHPDGRTFATGNQDKTCRVWDVRN 360
L +VGDD + LL+D+ +GK +L GH DYSFASAW PDGRTFATGNQDKTCR+WD RN
Sbjct: 290 LAVIVGDDPNGLLIDANSGKTLHSLKGHFDYSFASAWSPDGRTFATGNQDKTCRIWDARN 349
Query: 361 LSTSLSVLRGNIGAIRCIRYSSDGQFMLFSEPADFVHVYSAAADYKKRQEIDFFGEISGI 420
LS SL VLRGN+GAIR IR++SDGQFM +EPADFVHV+ +DY +RQE+DFFGEISG+
Sbjct: 350 LSKSLHVLRGNLGAIRSIRFTSDGQFMSMAEPADFVHVFDVGSDYTRRQELDFFGEISGM 409
Query: 421 SLSPDDESLFVGVCDRVYASLLHYRMVHSFGYLDSF 456
S SPD + LFVGV DR Y SLL + +++ YLDS
Sbjct: 410 SFSPDTDMLFVGVWDRTYGSLLQFGRLYNHSYLDSL 445
>Os08g0497600 WD40-like domain containing protein
Length = 432
Score = 513 bits (1320), Expect = e-145, Method: Compositional matrix adjust.
Identities = 230/392 (58%), Positives = 299/392 (76%)
Query: 64 DTSAAEARAGKDIQGIPWERLQITRSDYRKARLVQYKNYENFPQSGELMDKICKQVDKIS 123
DTSA + + GKDIQGIPW+ L +R YRK R+VQY N+EN P SG+ +K+C VDK +
Sbjct: 39 DTSAVDVKKGKDIQGIPWDNLSFSRDRYRKTRMVQYANFENVPNSGKNSEKVCTPVDKGA 98
Query: 124 KYYEFHYNTRLVKPSILHFQLRNLLWATSKHDVYFMSNSTVGHWSSLSHNLSEVLDFSGH 183
YYEF YNTR VKP+ILHFQLRNL+WAT++HDVY +S +V HWS + +V+D GH
Sbjct: 99 LYYEFQYNTRSVKPTILHFQLRNLVWATTRHDVYLLSQRSVLHWSPFASEKHKVIDLQGH 158
Query: 184 VAPAQKHPGSLLEGFSGVQVSTLSVNEGLLVAGGFQGELICKVVGDRDVKFCTRTTLSDN 243
+ P++KH G++ EGF QVSTL+V LLVAGGF+GELICK + + +C ++T DN
Sbjct: 159 ITPSEKHQGNVSEGFYQAQVSTLAVRGNLLVAGGFRGELICKFLDREGISYCCKSTHDDN 218
Query: 244 AITNAIDIHRSASGSLRVTVSNNDCGVREFDMETFQLLNHFSYNWPVNHTSVSPDRKLLA 303
ITN+++I SGS+ SNNDCGVR+FDME FQ+ N+F + W VNHTS+SPD KL+A
Sbjct: 219 GITNSLEIFEKPSGSVHFLASNNDCGVRDFDMEKFQICNNFRFPWAVNHTSLSPDGKLVA 278
Query: 304 VVGDDRDALLVDSRNGKVTSTLVGHLDYSFASAWHPDGRTFATGNQDKTCRVWDVRNLST 363
+VGD+ + L+VD+ +GK L GHLDYSFASAW+PDGRTFATGNQDKTCR+WD+RNLS
Sbjct: 279 IVGDNPEGLIVDTNSGKTVHELRGHLDYSFASAWNPDGRTFATGNQDKTCRIWDIRNLSK 338
Query: 364 SLSVLRGNIGAIRCIRYSSDGQFMLFSEPADFVHVYSAAADYKKRQEIDFFGEISGISLS 423
S++VL GN+GAIR IRY+SDG+F+ +EPADFVH++ + Y+++Q +DFFGEISGIS S
Sbjct: 339 SVAVLGGNMGAIRSIRYTSDGRFLAMAEPADFVHIFDVGSGYRRKQVVDFFGEISGISFS 398
Query: 424 PDDESLFVGVCDRVYASLLHYRMVHSFGYLDS 455
PD E+LF+GV DR Y+SLL Y + + YLDS
Sbjct: 399 PDTEALFIGVHDRTYSSLLQYNRLRFYSYLDS 430
>Os03g0386000 Similar to WD domain protein-like
Length = 402
Score = 452 bits (1164), Expect = e-127, Method: Compositional matrix adjust.
Identities = 221/385 (57%), Positives = 281/385 (72%), Gaps = 8/385 (2%)
Query: 79 IPWERLQITRSDYRKARLVQYKNYENFPQSGELMDKICKQVDKISKYYEFHYNTRLVKPS 138
IPWERL +R+ YR+ RL QYKNYEN + ++K CKQV++ +Y+FH NTRLVK +
Sbjct: 20 IPWERLNYSRNQYREMRLRQYKNYENLTMPRDGLEKECKQVERKDTFYDFHLNTRLVKST 79
Query: 139 ILHFQLRNLLWATSKHDVYFMSNSTVGHWSSLSHNLSEVLDFSGHVAPAQKHPGSLLEGF 198
I+HFQLRNLLWATSKHDVY M N +V HWSSL EVL+ +G +AP+Q G++
Sbjct: 80 IVHFQLRNLLWATSKHDVYLMQNYSVMHWSSLLQRGKEVLNVAGQLAPSQNVRGAM--PL 137
Query: 199 SGVQVSTLSVNEGLLVAGGFQGELICKVVGDRDVKFCTRTTLSDNAITNAIDIHRSASGS 258
S VQ+ST++V L+VAGGFQGELICK V V FCT T ++N+ITNA+DI+++ +G
Sbjct: 138 SRVQISTMAVKGNLMVAGGFQGELICKYVDKPGVAFCTNLTGNNNSITNAVDIYQAPNGG 197
Query: 259 LRVTVSNNDCGVREFDMETFQLLNHFSYNWPVNHTSVSPDRKLLAVVGDDRDALLVDSRN 318
R+T +NNDC VR FD E F L++HF++ W VN+TSVSPD KLLAV+GD D L+ DS++
Sbjct: 198 TRITTANNDCVVRTFDTERFSLISHFAFPWSVNNTSVSPDGKLLAVLGDSSDCLIADSQS 257
Query: 319 GKVTSTLVGHLDYSFASAWHPDGRTFATGNQDKTCRVWDVRNLSTSLSVLRGNIGAIRCI 378
GK + L GHLDYSF+SAWHPDGR ATGNQD+TCRVWDVRN+S S++VL G IGA+R +
Sbjct: 258 GKEMARLKGHLDYSFSSAWHPDGRVVATGNQDRTCRVWDVRNMSRSVAVLEGRIGAVRGL 317
Query: 379 RYSSDGQFMLFSEPADFVHVYSAAADYKKRQEIDFFGEISGISLSP------DDESLFVG 432
RYS DG+F+ SEPADFVHVY AAA Y QEID FGEI+G++ SP E+LFV
Sbjct: 318 RYSPDGRFLAASEPADFVHVYDAAAGYADAQEIDLFGEIAGVAFSPAGNNGGGGEALFVS 377
Query: 433 VCDRVYASLLHYRMVHSFGYLDSFM 457
+ DR Y SLL + GYLD ++
Sbjct: 378 IADRTYGSLLEFHRRRRHGYLDCYV 402
>Os08g0408200 Similar to GAMYB-binding protein (Fragment)
Length = 444
Score = 439 bits (1129), Expect = e-123, Method: Compositional matrix adjust.
Identities = 204/393 (51%), Positives = 276/393 (70%), Gaps = 2/393 (0%)
Query: 62 ITDTSAAEARAGKDIQGIPWERLQITRSDYRKARLVQYKNYENFPQSGELMDKICKQVDK 121
+TD S + R GKD+QGIPWE++ R YR+ ++ Y+NY+N + E K CK+V+K
Sbjct: 51 LTDVSVEDVRDGKDMQGIPWEKIVFRRDQYREMKMKNYRNYQNLSYAREEALKDCKKVEK 110
Query: 122 ISKYYEFHYNTRLVKPSILHFQLRNLLWATSKHDVYFMSNSTVGHWSSLSHNLSEVLDFS 181
S YY+F YNTR +PSI+HFQLRNL+WAT+KHDVY + N +V HWSSL +E+++
Sbjct: 111 DSPYYDFQYNTRRARPSIVHFQLRNLVWATTKHDVYTVHNQSVTHWSSLDQTSTELINAD 170
Query: 182 GHVAPAQKHPGSLLEGFSGVQVSTLSVNEGLLVAGGFQGELICKVVGDRDVKFCTRTTLS 241
+ P Q+ GS + + VQV+T++V++ LLV GGFQGELICK + D V F TR T
Sbjct: 171 DCIIPKQRGHGS--QSVAMVQVTTMAVDDSLLVIGGFQGELICKRLEDDGVLFSTRVTDD 228
Query: 242 DNAITNAIDIHRSASGSLRVTVSNNDCGVREFDMETFQLLNHFSYNWPVNHTSVSPDRKL 301
+NAITN+++I++ +GS R+ +NNDC VR FD+E F LL H+ + W VN SVSP L
Sbjct: 229 ENAITNSLEIYQDPTGSRRLVAANNDCSVRIFDIEYFDLLKHYVFPWSVNSVSVSPKGGL 288
Query: 302 LAVVGDDRDALLVDSRNGKVTSTLVGHLDYSFASAWHPDGRTFATGNQDKTCRVWDVRNL 361
AV+GD D L+VD + GK L GHLDYSFASAWHPDG ATG+QD TCR+WD+RNL
Sbjct: 289 FAVLGDHEDGLVVDPKCGKAIGALKGHLDYSFASAWHPDGNILATGSQDTTCRLWDIRNL 348
Query: 362 STSLSVLRGNIGAIRCIRYSSDGQFMLFSEPADFVHVYSAAADYKKRQEIDFFGEISGIS 421
S S++VL G +G+IRCI++SSDG+F+ +EP DFVH+Y + ADY + EID FGEI+G+S
Sbjct: 349 SESVAVLGGRMGSIRCIKFSSDGRFLATAEPVDFVHIYDSYADYGRSHEIDLFGEIAGLS 408
Query: 422 LSPDDESLFVGVCDRVYASLLHYRMVHSFGYLD 454
SPD E+L+VG+ D Y L+ + H YL+
Sbjct: 409 FSPDAEALYVGIADPTYGGLIEFNRRHQHHYLN 441
>AK108953
Length = 331
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 119/268 (44%), Gaps = 28/268 (10%)
Query: 138 SILHFQLRNLLWAT-SKHDVYFMSNSTVGHWSSLSHNLSEVLDFSGHVAPAQKHPGSLLE 196
SI H+QLR+L+ A ++H+ Y + ++ + + + + V +
Sbjct: 24 SIHHWQLRDLISAADTEHEFYCVHDTKIYCYDTDTKQSKLVSNL---------------- 67
Query: 197 GFSGVQVSTLSVNEGLLVAGGFQGELICKVVGDRDVKFCTRTTLSDNAITNAIDIHRSAS 256
G ++++ + AGG GEL + + +V F + NA+ + R +
Sbjct: 68 ---GFTPNSMTCRGDFVAAGGLHGELEVRQLACGEVCF---KGAVGTTVNNALHLARISG 121
Query: 257 GSLRVTVSNNDCGVREFDMETFQLLNHFSYNWPVNHTSVSPDRKLLAVVGDDRDALLVDS 316
G R+ V ND ++ + + + + P+N+ ++SPD + L VGD LL +
Sbjct: 122 GEARLFVCCNDNTIKVYKLPSMESATVIRCPCPINYAALSPDGRHLVAVGDCNPTLLYQA 181
Query: 317 R-NGKVT-STLVGHLDYSFASAWHPDGRTFATGNQDKTCRVWDVRNLSTSLSVLRGNIGA 374
G V ++ D AW+ G +F++ QD VWD R+ ++ L + A
Sbjct: 182 TPTGFVQLASFTEASDVGMCCAWNAHGTSFSSCAQDGAVGVWDQRS-GACIARLSCST-A 239
Query: 375 IRCIRYSSDG-QFMLFSEPADFVHVYSA 401
RC+++S+ + SE + VH++ A
Sbjct: 240 TRCVKFSAAPLDLLAVSEHEERVHLFDA 267
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,706,163
Number of extensions: 588175
Number of successful extensions: 1773
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1777
Number of HSP's successfully gapped: 6
Length of query: 457
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 353
Effective length of database: 11,605,545
Effective search space: 4096757385
Effective search space used: 4096757385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)