Os03g0386000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to WD domain protein-like.
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Os03g0386000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to WD domain protein-like.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 495.28 | 1.05 | 4.92 | -2.74 | 0.785 | -1.31 | 1.05 | -3.79 | 0.263 | 5.74 | 20 | 1591 | -- | -- |
| 503.36 | 1.04 | 4.82 | -1.65 | 0.855 | -1.42 | 1.06 | -- | 0.425 | 5.47 | 24.49 | 1403 | -- | -- |
| 497.13 | 1.04 | 4.93 | -2.72 | 0.744 | -1.32 | -- | -3.86 | 0.255 | 5.8 | 19.78 | 1691 | -- | -- |
| 506.82 | 1.05 | 4.81 | -1.67 | 0.726 | -1.39 | -- | -- | 0.486 | 6.24 | 23.15 | 1593 | -- | -- |
| 521.31 | 1.06 | 4.93 | -2.64 | -- | -1.46 | -- | -3.8 | 0.305 | -- | 20.02 | 1878 | -- | -- |
| 577.18 | 1.13 | 4.87 | -2.19 | 0.788 | -- | 0.867 | -- | 0.221 | 6.01 | -- | -- | -- | -- |
| 578.66 | 1.13 | 4.87 | -2.18 | 0.796 | -- | -- | -- | 0.218 | 6.37 | -- | -- | -- | -- |
| 522.64 | 1.06 | 4.81 | -1.72 | -- | -1.8 | -- | -- | 0.528 | -- | 22.18 | 664 | -- | -- |
| 533.19 | 1.08 | 4.65 | -- | 0.795 | -2.35 | -- | -- | 1.14 | 6.05 | 15.99 | 19776 | -- | -- |
| 611.56 | 1.16 | 4.88 | -2.16 | -- | -- | -- | -- | 0.235 | -- | -- | -- | -- | -- |
| 703.55 | 1.24 | 4.81 | -- | 0.767 | -- | -- | -- | 0.461 | 6.53 | -- | -- | -- | -- |
| 564.43 | 1.11 | 4.67 | -- | -- | -2.24 | -- | -- | 1.17 | -- | 17.59 | 20678 | -- | -- |
| 734.17 | 1.26 | 4.83 | -- | -- | -- | -- | -- | 0.475 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 489.89 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 2 | 490.22 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 8 | 492.12 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 8 | 18 |
| 56 | 495.36 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 24 | 21 |
| 57 | 495.37 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 18 | NA |
| 67 | 495.57 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 10 | 16 |
| 68 | 495.59 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 74 | 495.65 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 10 | 22 |
| 105 | 495.82 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 3 | 22 |
| 127 | 495.89 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 145 | 495.97 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 149 | 495.99 | temperature | 20.0 | 1440 | > th | dose dependent | no | NA | NA |
| 169 | 496.04 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 177 | 496.08 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 13 | 11 |
| 228 | 496.35 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 20 | 2 |
| 244 | 496.40 | wind | 1.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 248 | 496.43 | temperature | 10.0 | 1440 | > th | dose dependent | sin | 19 | NA |
| 307 | 496.66 | temperature | 30.0 | 720 | < th | dose dependent | sin | 18 | NA |
| 414 | 497.11 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 632 | 497.99 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 3 | NA |
| 635 | 498.00 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 638 | 498.01 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 710 | 498.25 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 711 | 498.25 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 717 | 498.26 | wind | 5.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 819 | 498.62 | wind | 5.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 836 | 498.68 | wind | 1.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 879 | 498.86 | temperature | 10.0 | 1440 | > th | dose dependent | no | NA | NA |
| 938 | 499.00 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 965 | 499.16 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 13 | 16 |