BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0386000 Os03g0386000|AK072984
(402 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0386000 Similar to WD domain protein-like 820 0.0
Os08g0408200 Similar to GAMYB-binding protein (Fragment) 473 e-133
Os06g0171900 Similar to GAMYB-binding protein (Fragment) 464 e-131
Os08g0497600 WD40-like domain containing protein 448 e-126
Os02g0721600 Similar to WD-repeat protein-like 443 e-125
AK108953 76 6e-14
Os03g0725400 Similar to WD-repeat protein 5 (BMP2-induced 3... 69 6e-12
>Os03g0386000 Similar to WD domain protein-like
Length = 402
Score = 820 bits (2119), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/402 (98%), Positives = 394/402 (98%)
Query: 1 MASTXXXXXXXXRRTSRWTIPWERLNYSRNQYREMRLRQYKNYENLTMPRDGLEKECKQV 60
MAST RRTSRWTIPWERLNYSRNQYREMRLRQYKNYENLTMPRDGLEKECKQV
Sbjct: 1 MASTPPPPLQPPRRTSRWTIPWERLNYSRNQYREMRLRQYKNYENLTMPRDGLEKECKQV 60
Query: 61 ERKDTFYDFHLNTRLVKSTIVHFQLRNLLWATSKHDVYLMQNYSVMHWSSLLQRGKEVLN 120
ERKDTFYDFHLNTRLVKSTIVHFQLRNLLWATSKHDVYLMQNYSVMHWSSLLQRGKEVLN
Sbjct: 61 ERKDTFYDFHLNTRLVKSTIVHFQLRNLLWATSKHDVYLMQNYSVMHWSSLLQRGKEVLN 120
Query: 121 VAGQLAPSQNVRGAMPLSRVQISTMAVKGNLMVAGGFQGELICKYVDKPGVAFCTNLTGN 180
VAGQLAPSQNVRGAMPLSRVQISTMAVKGNLMVAGGFQGELICKYVDKPGVAFCTNLTGN
Sbjct: 121 VAGQLAPSQNVRGAMPLSRVQISTMAVKGNLMVAGGFQGELICKYVDKPGVAFCTNLTGN 180
Query: 181 NNSITNAVDIYQAPNGGTRITTANNDCVVRTFDTERFSLISHFAFPWSVNNTSVSPDGKL 240
NNSITNAVDIYQAPNGGTRITTANNDCVVRTFDTERFSLISHFAFPWSVNNTSVSPDGKL
Sbjct: 181 NNSITNAVDIYQAPNGGTRITTANNDCVVRTFDTERFSLISHFAFPWSVNNTSVSPDGKL 240
Query: 241 LAVLGDSSDCLIADSQSGKEMARLKGHLDYSFSSAWHPDGRVVATGNQDRTCRVWDVRNM 300
LAVLGDSSDCLIADSQSGKEMARLKGHLDYSFSSAWHPDGRVVATGNQDRTCRVWDVRNM
Sbjct: 241 LAVLGDSSDCLIADSQSGKEMARLKGHLDYSFSSAWHPDGRVVATGNQDRTCRVWDVRNM 300
Query: 301 SRSVAVLEGRIGAVRGLRYSPDGRFLAASEPADFVHVYDAAAGYADAQEIDLFGEIAGVA 360
SRSVAVLEGRIGAVRGLRYSPDGRFLAASEPADFVHVYDAAAGYADAQEIDLFGEIAGVA
Sbjct: 301 SRSVAVLEGRIGAVRGLRYSPDGRFLAASEPADFVHVYDAAAGYADAQEIDLFGEIAGVA 360
Query: 361 FSPAGNNGGGGEALFVSIADRTYGSLLEFHRRRRHGYLDCYV 402
FSPAGNNGGGGEALFVSIADRTYGSLLEFHRRRRHGYLDCYV
Sbjct: 361 FSPAGNNGGGGEALFVSIADRTYGSLLEFHRRRRHGYLDCYV 402
>Os08g0408200 Similar to GAMYB-binding protein (Fragment)
Length = 444
Score = 473 bits (1217), Expect = e-133, Method: Compositional matrix adjust.
Identities = 213/381 (55%), Positives = 282/381 (74%), Gaps = 6/381 (1%)
Query: 20 IPWERLNYSRNQYREMRLRQYKNYENLTMPRDGLEKECKQVERKDTFYDFHLNTRLVKST 79
IPWE++ + R+QYREM+++ Y+NY+NL+ R+ K+CK+VE+ +YDF NTR + +
Sbjct: 68 IPWEKIVFRRDQYREMKMKNYRNYQNLSYAREEALKDCKKVEKDSPYYDFQYNTRRARPS 127
Query: 80 IVHFQLRNLLWATSKHDVYLMQNYSVMHWSSLLQRGKEVLNVAGQLAPSQNVRGAMPLSR 139
IVHFQLRNL+WAT+KHDVY + N SV HWSSL Q E++N + P Q G+ ++
Sbjct: 128 IVHFQLRNLVWATTKHDVYTVHNQSVTHWSSLDQTSTELINADDCIIPKQRGHGSQSVAM 187
Query: 140 VQISTMAVKGNLMVAGGFQGELICKYVDKPGVAFCTNLTGNNNSITNAVDIYQAPNGGTR 199
VQ++TMAV +L+V GGFQGELICK ++ GV F T +T + N+ITN+++IYQ P G R
Sbjct: 188 VQVTTMAVDDSLLVIGGFQGELICKRLEDDGVLFSTRVTDDENAITNSLEIYQDPTGSRR 247
Query: 200 ITTANNDCVVRTFDTERFSLISHFAFPWSVNNTSVSPDGKLLAVLGDSSDCLIADSQSGK 259
+ ANNDC VR FD E F L+ H+ FPWSVN+ SVSP G L AVLGD D L+ D + GK
Sbjct: 248 LVAANNDCSVRIFDIEYFDLLKHYVFPWSVNSVSVSPKGGLFAVLGDHEDGLVVDPKCGK 307
Query: 260 EMARLKGHLDYSFSSAWHPDGRVVATGNQDRTCRVWDVRNMSRSVAVLEGRIGAVRGLRY 319
+ LKGHLDYSF+SAWHPDG ++ATG+QD TCR+WD+RN+S SVAVL GR+G++R +++
Sbjct: 308 AIGALKGHLDYSFASAWHPDGNILATGSQDTTCRLWDIRNLSESVAVLGGRMGSIRCIKF 367
Query: 320 SPDGRFLAASEPADFVHVYDAAAGYADAQEIDLFGEIAGVAFSPAGNNGGGGEALFVSIA 379
S DGRFLA +EP DFVH+YD+ A Y + EIDLFGEIAG++FSP EAL+V IA
Sbjct: 368 SSDGRFLATAEPVDFVHIYDSYADYGRSHEIDLFGEIAGLSFSP------DAEALYVGIA 421
Query: 380 DRTYGSLLEFHRRRRHGYLDC 400
D TYG L+EF+RR +H YL+C
Sbjct: 422 DPTYGGLIEFNRRHQHHYLNC 442
>Os06g0171900 Similar to GAMYB-binding protein (Fragment)
Length = 457
Score = 464 bits (1193), Expect = e-131, Method: Compositional matrix adjust.
Identities = 221/385 (57%), Positives = 281/385 (72%), Gaps = 8/385 (2%)
Query: 20 IPWERLNYSRNQYREMRLRQYKNYENLTMPRDGLEKECKQVERKDTFYDFHLNTRLVKST 79
IPWERL +R+ YR+ RL QYKNYEN + ++K CKQV++ +Y+FH NTRLVK +
Sbjct: 79 IPWERLQITRSDYRKARLVQYKNYENFPQSGELMDKICKQVDKISKYYEFHYNTRLVKPS 138
Query: 80 IVHFQLRNLLWATSKHDVYLMQNYSVMHWSSLLQRGKEVLNVAGQLAPSQNVRGAM--PL 137
I+HFQLRNLLWATSKHDVY M N +V HWSSL EVL+ +G +AP+Q G++
Sbjct: 139 ILHFQLRNLLWATSKHDVYFMSNSTVGHWSSLSHNLSEVLDFSGHVAPAQKHPGSLLEGF 198
Query: 138 SRVQISTMAVKGNLMVAGGFQGELICKYVDKPGVAFCTNLTGNNNSITNAVDIYQAPNGG 197
S VQ+ST++V L+VAGGFQGELICK V V FCT T ++N+ITNA+DI+++ +G
Sbjct: 199 SGVQVSTLSVNEGLLVAGGFQGELICKVVGDRDVKFCTRTTLSDNAITNAIDIHRSASGS 258
Query: 198 TRITTANNDCVVRTFDTERFSLISHFAFPWSVNNTSVSPDGKLLAVLGDSSDCLIADSQS 257
R+T +NNDC VR FD E F L++HF++ W VN+TSVSPD KLLAV+GD D L+ DS++
Sbjct: 259 LRVTVSNNDCGVREFDMETFQLLNHFSYNWPVNHTSVSPDRKLLAVVGDDRDALLVDSRN 318
Query: 258 GKEMARLKGHLDYSFSSAWHPDGRVVATGNQDRTCRVWDVRNMSRSVAVLEGRIGAVRGL 317
GK + L GHLDYSF+SAWHPDGR ATGNQD+TCRVWDVRN+S S++VL G IGA+R +
Sbjct: 319 GKVTSTLVGHLDYSFASAWHPDGRTFATGNQDKTCRVWDVRNLSTSLSVLRGNIGAIRCI 378
Query: 318 RYSPDGRFLAASEPADFVHVYDAAAGYADAQEIDLFGEIAGVAFSPAGNNGGGGEALFVS 377
RYS DG+F+ SEPADFVHVY AAA Y QEID FGEI+G++ SP E+LFV
Sbjct: 379 RYSSDGQFMLFSEPADFVHVYSAAADYKKRQEIDFFGEISGISLSP------DDESLFVG 432
Query: 378 IADRTYGSLLEFHRRRRHGYLDCYV 402
+ DR Y SLL + GYLD ++
Sbjct: 433 VCDRVYASLLHYRMVHSFGYLDSFM 457
>Os08g0497600 WD40-like domain containing protein
Length = 432
Score = 448 bits (1152), Expect = e-126, Method: Compositional matrix adjust.
Identities = 197/385 (51%), Positives = 286/385 (74%), Gaps = 8/385 (2%)
Query: 20 IPWERLNYSRNQYREMRLRQYKNYENLTMPRDGLEKECKQVERKDTFYDFHLNTRLVKST 79
IPW+ L++SR++YR+ R+ QY N+EN+ EK C V++ +Y+F NTR VK T
Sbjct: 54 IPWDNLSFSRDRYRKTRMVQYANFENVPNSGKNSEKVCTPVDKGALYYEFQYNTRSVKPT 113
Query: 80 IVHFQLRNLLWATSKHDVYLMQNYSVMHWSSLLQRGKEVLNVAGQLAPSQNVRGAMP--L 137
I+HFQLRNL+WAT++HDVYL+ SV+HWS +V+++ G + PS+ +G +
Sbjct: 114 ILHFQLRNLVWATTRHDVYLLSQRSVLHWSPFASEKHKVIDLQGHITPSEKHQGNVSEGF 173
Query: 138 SRVQISTMAVKGNLMVAGGFQGELICKYVDKPGVAFCTNLTGNNNSITNAVDIYQAPNGG 197
+ Q+ST+AV+GNL+VAGGF+GELICK++D+ G+++C T ++N ITN+++I++ P+G
Sbjct: 174 YQAQVSTLAVRGNLLVAGGFRGELICKFLDREGISYCCKSTHDDNGITNSLEIFEKPSGS 233
Query: 198 TRITTANNDCVVRTFDTERFSLISHFAFPWSVNNTSVSPDGKLLAVLGDSSDCLIADSQS 257
+NNDC VR FD E+F + ++F FPW+VN+TS+SPDGKL+A++GD+ + LI D+ S
Sbjct: 234 VHFLASNNDCGVRDFDMEKFQICNNFRFPWAVNHTSLSPDGKLVAIVGDNPEGLIVDTNS 293
Query: 258 GKEMARLKGHLDYSFSSAWHPDGRVVATGNQDRTCRVWDVRNMSRSVAVLEGRIGAVRGL 317
GK + L+GHLDYSF+SAW+PDGR ATGNQD+TCR+WD+RN+S+SVAVL G +GA+R +
Sbjct: 294 GKTVHELRGHLDYSFASAWNPDGRTFATGNQDKTCRIWDIRNLSKSVAVLGGNMGAIRSI 353
Query: 318 RYSPDGRFLAASEPADFVHVYDAAAGYADAQEIDLFGEIAGVAFSPAGNNGGGGEALFVS 377
RY+ DGRFLA +EPADFVH++D +GY Q +D FGEI+G++FSP EALF+
Sbjct: 354 RYTSDGRFLAMAEPADFVHIFDVGSGYRRKQVVDFFGEISGISFSP------DTEALFIG 407
Query: 378 IADRTYGSLLEFHRRRRHGYLDCYV 402
+ DRTY SLL+++R R + YLD +
Sbjct: 408 VHDRTYSSLLQYNRLRFYSYLDSAI 432
>Os02g0721600 Similar to WD-repeat protein-like
Length = 446
Score = 443 bits (1140), Expect = e-125, Method: Compositional matrix adjust.
Identities = 203/382 (53%), Positives = 274/382 (71%), Gaps = 8/382 (2%)
Query: 20 IPWERLNYSRNQYREMRLRQYKNYENLTMPRDGLEKECKQVERKDTFYDFHLNTRLVKST 79
IPWE+L +R++YR+ RL QYKNYEN+ + KECK E+ +Y+F NTR VKST
Sbjct: 68 IPWEKLAITRDKYRQTRLDQYKNYENMPNSGEAAAKECKPTEKGGMYYEFRRNTRSVKST 127
Query: 80 IVHFQLRNLLWATSKHDVYLMQNYSVMHWSSLLQRGKEVLNVAGQLAPSQNVRGAM--PL 137
I+HFQLRNL+WATSKHDVYLM ++SV+HWS+L E++NV G +AP + G++
Sbjct: 128 ILHFQLRNLVWATSKHDVYLMSHFSVLHWSALSGLDTELMNVQGHVAPREKHPGSLLEGF 187
Query: 138 SRVQISTMAVKGNLMVAGGFQGELICKYVDKPGVAFCTNLTGNNNSITNAVDIYQAPNGG 197
S Q+ST++VK NL+VAGGFQGELICK++D+ G++FC T + N+ITNAV+I+ +G
Sbjct: 188 SGTQVSTLSVKDNLLVAGGFQGELICKHLDREGISFCCRTTYDENAITNAVEIFNTTSGA 247
Query: 198 TRITTANNDCVVRTFDTERFSLISHFAFPWSVNNTSVSPDGKLLAVLGDSSDCLIADSQS 257
+NND VR +D ERF L HF F W VN+T++SPD KL ++GD + L+ D+ S
Sbjct: 248 VHFMASNNDSGVRDYDMERFQLYKHFQFEWPVNHTALSPDRKLAVIVGDDPNGLLIDANS 307
Query: 258 GKEMARLKGHLDYSFSSAWHPDGRVVATGNQDRTCRVWDVRNMSRSVAVLEGRIGAVRGL 317
GK + LKGH DYSF+SAW PDGR ATGNQD+TCR+WD RN+S+S+ VL G +GA+R +
Sbjct: 308 GKTLHSLKGHFDYSFASAWSPDGRTFATGNQDKTCRIWDARNLSKSLHVLRGNLGAIRSI 367
Query: 318 RYSPDGRFLAASEPADFVHVYDAAAGYADAQEIDLFGEIAGVAFSPAGNNGGGGEALFVS 377
R++ DG+F++ +EPADFVHV+D + Y QE+D FGEI+G++FSP + LFV
Sbjct: 368 RFTSDGQFMSMAEPADFVHVFDVGSDYTRRQELDFFGEISGMSFSP------DTDMLFVG 421
Query: 378 IADRTYGSLLEFHRRRRHGYLD 399
+ DRTYGSLL+F R H YLD
Sbjct: 422 VWDRTYGSLLQFGRLYNHSYLD 443
>AK108953
Length = 331
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 119/267 (44%), Gaps = 26/267 (9%)
Query: 78 STIVHFQLRNLLWAT-SKHDVYLMQNYSVMHWSSLLQRGKEVLNVAGQLAPSQNVRGAMP 136
++I H+QLR+L+ A ++H+ Y + + + + + ++ K V N+ G P
Sbjct: 23 TSIHHWQLRDLISAADTEHEFYCVHDTKIYCYDTDTKQSKLVSNL-----------GFTP 71
Query: 137 LSRVQISTMAVKGNLMVAGGFQGELICKYVDKPGVAFCTNLTGNNNSITNAVDIYQAPNG 196
++M +G+ + AGG GEL + + V F ++ NA+ + + G
Sbjct: 72 ------NSMTCRGDFVAAGGLHGELEVRQLACGEVCF---KGAVGTTVNNALHLARISGG 122
Query: 197 GTRITTANNDCVVRTFDTERFSLISHFAFPWSVNNTSVSPDGKLLAVLGDSSDCLI--AD 254
R+ ND ++ + + P +N ++SPDG+ L +GD + L+ A
Sbjct: 123 EARLFVCCNDNTIKVYKLPSMESATVIRCPCPINYAALSPDGRHLVAVGDCNPTLLYQAT 182
Query: 255 SQSGKEMARLKGHLDYSFSSAWHPDGRVVATGNQDRTCRVWDVRNMSRSVAVLEGRIGAV 314
++A D AW+ G ++ QD VWD R+ + +A L A
Sbjct: 183 PTGFVQLASFTEASDVGMCCAWNAHGTSFSSCAQDGAVGVWDQRSGA-CIARLSCST-AT 240
Query: 315 RGLRYSPDG-RFLAASEPADFVHVYDA 340
R +++S LA SE + VH++DA
Sbjct: 241 RCVKFSAAPLDLLAVSEHEERVHLFDA 267
>Os03g0725400 Similar to WD-repeat protein 5 (BMP2-induced 3-kb gene protein)
(WD-repeat protein BIG-3)
Length = 324
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 100/213 (46%), Gaps = 18/213 (8%)
Query: 167 DKPGVAFCTNLTGNNNSITNAVDIYQAPNGGTRITTANNDCVVRTFDTERF-SLISHFA- 224
D PG A L G+ +++ + +P+G + +A+ D ++R + T S ++ A
Sbjct: 5 DNPGYALRATLAGHRRAVSA---VKFSPDG-RLLASASADKLLRVWSTSDLASPVAELAG 60
Query: 225 FPWSVNNTSVSPDGKLLAVLGDSSDCLIAD---------SQSGKEMARLKGHLDYSFSSA 275
V++ + SPDG+L+A D I D + M L GH +Y+F A
Sbjct: 61 HGEGVSDLAFSPDGRLIASASDDRTVRIWDLGDGGGGGGGGEPRLMKTLSGHTNYAFCLA 120
Query: 276 WHPDGRVVATGNQDRTCRVWDVRNMSRSVAVLEGRIGAVRGLRYSPDGRFLAASEPADFV 335
+ P G ++A+G+ D T RVW+VR+ R + VL V + ++ DG + +
Sbjct: 121 FSPHGNMLASGSFDETVRVWEVRS-GRCLRVLPAHSEPVTSVDFNRDGAMIVSGSYDGLC 179
Query: 336 HVYDAAAGYADAQEIDLFGEIAGVAFSPAGNNG 368
++D+A G+ ID E V+F+ NG
Sbjct: 180 RIWDSATGHCIKTLID--DESPPVSFAKFSPNG 210
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.134 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,905,256
Number of extensions: 586173
Number of successful extensions: 2109
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 2106
Number of HSP's successfully gapped: 7
Length of query: 402
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 299
Effective length of database: 11,657,759
Effective search space: 3485669941
Effective search space used: 3485669941
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)