BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0438400 Os08g0438400|Os08g0438400
(359 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0438400 ZF-HD homeobox protein Cys/His-rich dimerisati... 350 9e-97
Os09g0414600 Similar to ZF-HD homeobox protein (Fragment) 92 5e-19
Os05g0579300 ZF-HD homeobox protein Cys/His-rich dimerisati... 91 2e-18
Os09g0466400 Similar to ZF-HD homeobox protein 87 1e-17
Os08g0479400 Similar to Hydroxyproline-rich glycoprotein DZ... 86 4e-17
Os02g0706600 ZF-HD homeobox protein Cys/His-rich dimerisati... 82 5e-16
Os04g0434500 ZF-HD homeobox protein Cys/His-rich dimerisati... 80 3e-15
Os11g0243300 ZF-HD homeobox protein Cys/His-rich dimerisati... 74 1e-13
Os12g0208900 ZF-HD homeobox protein Cys/His-rich dimerisati... 72 5e-13
Os01g0635550 ZF-HD homeobox protein Cys/His-rich dimerisati... 69 5e-12
Os03g0718500 ZF-HD homeobox protein Cys/His-rich dimerisati... 69 7e-12
>Os08g0438400 ZF-HD homeobox protein Cys/His-rich dimerisation region domain
containing protein
Length = 359
Score = 350 bits (898), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 196/332 (59%), Positives = 196/332 (59%)
Query: 1 MEAVVGVKYRPVVFPNGXXXXXXXXXXXXXXXXXXXXVYRECLKNHAASLGGHAVDGCGE 60
MEAVVGVKYRPVVFPNG VYRECLKNHAASLGGHAVDGCGE
Sbjct: 1 MEAVVGVKYRPVVFPNGGAAAAAAGKSKATPASATAAVYRECLKNHAASLGGHAVDGCGE 60
Query: 61 FMXXXXXXXXXXXXLKCAACGCHRNFHRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
FM LKCAACGCHRNFHRR
Sbjct: 61 FMPSPAADAADPASLKCAACGCHRNFHRRLPEAPPSPPLLALPPPPPPPPPPPPPPQPQQ 120
Query: 121 XXXRTAAVAVAPQLLLHGSHQRREQSPETDRVRGPGHHHXXXXXXXXXXXXXXXXXXXXX 180
RTAAVAVAPQLLLHGSHQRREQSPETDRVRGPGHHH
Sbjct: 121 HLPRTAAVAVAPQLLLHGSHQRREQSPETDRVRGPGHHHDDDAAADDDDSEDSEMSDYDD 180
Query: 181 XRSASPLQAPPPVLSPGYLPSATHMLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
RSASPLQAPPPVLSPGYLPSATHMLL
Sbjct: 181 DRSASPLQAPPPVLSPGYLPSATHMLLSLGSASAPAVAASRPHAAAAAMGPPPPPGAATS 240
Query: 241 XXRKRFRTKFSPEQKQRMQALSERLGWRLQKRDEAVVDECCREIGVGKGVFKVWMHNNKH 300
RKRFRTKFSPEQKQRMQALSERLGWRLQKRDEAVVDECCREIGVGKGVFKVWMHNNKH
Sbjct: 241 ASRKRFRTKFSPEQKQRMQALSERLGWRLQKRDEAVVDECCREIGVGKGVFKVWMHNNKH 300
Query: 301 NFLGGHSARRSXXXXXXXXXXXXXVLTDFSIN 332
NFLGGHSARRS VLTDFSIN
Sbjct: 301 NFLGGHSARRSAAAAAAAPLAPPPVLTDFSIN 332
>Os09g0414600 Similar to ZF-HD homeobox protein (Fragment)
Length = 109
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/92 (54%), Positives = 55/92 (59%), Gaps = 4/92 (4%)
Query: 1 MEAVVGVKYRPVVFPNGXXXXXXXXXXXXXXXXXX---XXVYRECLKNHAASLGGHAVDG 57
MEA+ VKY+P+VFPNG VYRECLKNHAASLGGHA+DG
Sbjct: 1 MEAM-DVKYKPLVFPNGAIKKAAKPAAVAPAVGGGGGGETVYRECLKNHAASLGGHALDG 59
Query: 58 CGEFMXXXXXXXXXXXXLKCAACGCHRNFHRR 89
CGEFM L+CAACGCHRNFHRR
Sbjct: 60 CGEFMPSPAANPADPTSLRCAACGCHRNFHRR 91
>Os05g0579300 ZF-HD homeobox protein Cys/His-rich dimerisation region domain
containing protein
Length = 255
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/57 (66%), Positives = 51/57 (89%)
Query: 243 RKRFRTKFSPEQKQRMQALSERLGWRLQKRDEAVVDECCREIGVGKGVFKVWMHNNK 299
RKRFRTKF+PEQK++M A +ER+GWR+QK+DEA+V++ C ++GV + VFKVWMHNNK
Sbjct: 172 RKRFRTKFTPEQKEQMLAFAERVGWRMQKQDEALVEQFCAQVGVRRQVFKVWMHNNK 228
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 36/51 (70%), Gaps = 3/51 (5%)
Query: 39 YRECLKNHAASLGGHAVDGCGEFMXXXXXXXXXXXXLKCAACGCHRNFHRR 89
Y ECL+NHAA++GGH VDGC EFM LKCAACGCHR+FHR+
Sbjct: 45 YHECLRNHAAAMGGHVVDGCREFM---PMPGDAADALKCAACGCHRSFHRK 92
>Os09g0466400 Similar to ZF-HD homeobox protein
Length = 279
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 46/60 (76%)
Query: 243 RKRFRTKFSPEQKQRMQALSERLGWRLQKRDEAVVDECCREIGVGKGVFKVWMHNNKHNF 302
+KRFRTKF+ EQK +M A +ER+GWR+QK DEA V + C E+GV + V KVWMHNNKH
Sbjct: 215 KKRFRTKFTQEQKDKMLAFAERVGWRIQKHDEAAVQQFCDEVGVKRHVLKVWMHNNKHTL 274
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
Query: 39 YRECLKNHAASLGGHAVDGCGEFMXXXXXXXXXXXXLKCAACGCHRNFHRR 89
YRECLKNHA +GGHAVDGCGEFM L+CAAC CHRNFHR+
Sbjct: 57 YRECLKNHAVGIGGHAVDGCGEFM--AAGEEGTIDALRCAACNCHRNFHRK 105
>Os08g0479400 Similar to Hydroxyproline-rich glycoprotein DZ-HRGP precursor
Length = 290
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 45/60 (75%)
Query: 243 RKRFRTKFSPEQKQRMQALSERLGWRLQKRDEAVVDECCREIGVGKGVFKVWMHNNKHNF 302
+KRFRTKF+ EQK +M A +ERLGWR+QK DEA V + C E+ V + V KVWMHNNKH
Sbjct: 226 KKRFRTKFTQEQKDKMLAFAERLGWRIQKHDEAAVQQFCEEVCVKRHVLKVWMHNNKHTL 285
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 37/51 (72%), Gaps = 2/51 (3%)
Query: 39 YRECLKNHAASLGGHAVDGCGEFMXXXXXXXXXXXXLKCAACGCHRNFHRR 89
YRECLKNHA +GGHAVDGCGEFM L+CAACGCHRNFHR+
Sbjct: 63 YRECLKNHAVGIGGHAVDGCGEFM--ASGEEGSIDALRCAACGCHRNFHRK 111
>Os02g0706600 ZF-HD homeobox protein Cys/His-rich dimerisation region domain
containing protein
Length = 456
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 44/58 (75%)
Query: 243 RKRFRTKFSPEQKQRMQALSERLGWRLQKRDEAVVDECCREIGVGKGVFKVWMHNNKH 300
+KRFRTKF+ EQK+RM+ + R+GWR+ K D A VD C ++GV + V KVWMHNNKH
Sbjct: 347 KKRFRTKFTAEQKERMREFAHRVGWRIHKPDAAAVDAFCAQVGVSRRVLKVWMHNNKH 404
>Os04g0434500 ZF-HD homeobox protein Cys/His-rich dimerisation region domain
containing protein
Length = 283
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 45/60 (75%)
Query: 243 RKRFRTKFSPEQKQRMQALSERLGWRLQKRDEAVVDECCREIGVGKGVFKVWMHNNKHNF 302
RKRFRTKF+PEQK+RM+ +E+ GWR+ + D+ +D C EIGV + V KVWMHN+K+
Sbjct: 163 RKRFRTKFTPEQKERMREFAEKQGWRINRNDDGALDRFCVEIGVKRHVLKVWMHNHKNQL 222
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 37/51 (72%), Gaps = 6/51 (11%)
Query: 39 YRECLKNHAASLGGHAVDGCGEFMXXXXXXXXXXXXLKCAACGCHRNFHRR 89
Y+EC++NHAA++GG A DGCGE+M LKCAACGCHR+FHRR
Sbjct: 23 YKECMRNHAAAMGGQAFDGCGEYM------PASPDSLKCAACGCHRSFHRR 67
>Os11g0243300 ZF-HD homeobox protein Cys/His-rich dimerisation region domain
containing protein
Length = 383
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 38/51 (74%), Gaps = 2/51 (3%)
Query: 39 YRECLKNHAASLGGHAVDGCGEFMXXXXXXXXXXXXLKCAACGCHRNFHRR 89
YRECLKNHAA++GG+A DGCGEFM LKC+ACGCHRNFHR+
Sbjct: 145 YRECLKNHAAAIGGNATDGCGEFM--PSGEEGSLEALKCSACGCHRNFHRK 193
>Os12g0208900 ZF-HD homeobox protein Cys/His-rich dimerisation region domain
containing protein
Length = 311
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 37/51 (72%), Gaps = 2/51 (3%)
Query: 39 YRECLKNHAASLGGHAVDGCGEFMXXXXXXXXXXXXLKCAACGCHRNFHRR 89
YRECLKNHAA++GG A DGCGEFM L+C+ACGCHRNFHR+
Sbjct: 91 YRECLKNHAAAIGGSATDGCGEFM--PGGEEGSLDALRCSACGCHRNFHRK 139
>Os01g0635550 ZF-HD homeobox protein Cys/His-rich dimerisation region domain
containing protein
Length = 232
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 40/50 (80%)
Query: 253 EQKQRMQALSERLGWRLQKRDEAVVDECCREIGVGKGVFKVWMHNNKHNF 302
EQK++M A +ER+GWR+Q+++EA V+ C ++GV + KVWMHNNKH+F
Sbjct: 169 EQKEQMLAFAERVGWRIQRQEEATVEHFCAQVGVRRQALKVWMHNNKHSF 218
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 35/51 (68%), Gaps = 5/51 (9%)
Query: 39 YRECLKNHAASLGGHAVDGCGEFMXXXXXXXXXXXXLKCAACGCHRNFHRR 89
Y ECL+NHAA+ GGH VDGCGEFM L CAACGCHR+FHRR
Sbjct: 40 YHECLRNHAAASGGHVVDGCGEFM-----PASTEEPLACAACGCHRSFHRR 85
>Os03g0718500 ZF-HD homeobox protein Cys/His-rich dimerisation region domain
containing protein
Length = 238
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 43/63 (68%), Gaps = 6/63 (9%)
Query: 243 RKRFRTKFSPEQKQRMQALSERLGWRLQKRD------EAVVDECCREIGVGKGVFKVWMH 296
R+R RTKF+ EQK RM +ERLGWR+ KR+ + V CREIGV + VFKVWMH
Sbjct: 119 RRRTRTKFTEEQKARMLRFAERLGWRMPKREPGRAPGDDEVARFCREIGVNRQVFKVWMH 178
Query: 297 NNK 299
N+K
Sbjct: 179 NHK 181
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.136 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,735,280
Number of extensions: 212836
Number of successful extensions: 681
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 666
Number of HSP's successfully gapped: 21
Length of query: 359
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 257
Effective length of database: 11,709,973
Effective search space: 3009463061
Effective search space used: 3009463061
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 157 (65.1 bits)