BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0430600 Os08g0430600|AK060045
(159 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0430600 Conserved hypothetical protein 207 3e-54
Os06g0264800 Conserved hypothetical protein 130 6e-31
Os02g0731600 Conserved hypothetical protein 129 8e-31
Os09g0465800 Conserved hypothetical protein 91 3e-19
Os06g0217700 Conserved hypothetical protein 91 3e-19
Os07g0469100 Similar to Thylakoid membrane phosphoprotein 1... 79 1e-15
Os02g0759900 Conserved hypothetical protein 75 3e-14
Os10g0536500 Conserved hypothetical protein 71 3e-13
>Os08g0430600 Conserved hypothetical protein
Length = 159
Score = 207 bits (527), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 109/159 (68%), Positives = 109/159 (68%)
Query: 1 MAGMVXXXXXXXSLCXXXXXXXXXXXXXXXXXXXXXXXSLRCEDSPKIALLQVQAMRXXX 60
MAGMV SLC SLRCEDSPKIALLQVQAMR
Sbjct: 1 MAGMVAAAAPPASLCRPIAVPRAPMRRRRLTPRVKTTPSLRCEDSPKIALLQVQAMRSSE 60
Query: 61 XXXXXXXXXXXXXXXXXWDAIENKSSVLFYGGGAIIAVWLSSIVVKAVDSVPVLPNILEL 120
WDAIENKSSVLFYGGGAIIAVWLSSIVVKAVDSVPVLPNILEL
Sbjct: 61 ESSSDEDDEILSELKEKWDAIENKSSVLFYGGGAIIAVWLSSIVVKAVDSVPVLPNILEL 120
Query: 121 VGLGYSGWFVYRYLLFKENREELANGFDALKKRITGNEE 159
VGLGYSGWFVYRYLLFKENREELANGFDALKKRITGNEE
Sbjct: 121 VGLGYSGWFVYRYLLFKENREELANGFDALKKRITGNEE 159
>Os06g0264800 Conserved hypothetical protein
Length = 156
Score = 130 bits (326), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 60/119 (50%), Positives = 84/119 (70%), Gaps = 1/119 (0%)
Query: 40 LRCEDSPKIALLQVQAMRXXXXXXXXXXXXXXXXXXXXWDAIENKSSVLFYGGGAIIAVW 99
LR +D+P+++LL+V+A W+AIE+K + L Y GGA++A+W
Sbjct: 39 LRLQDAPRLSLLRVRAA-SDDTSTSASGDELVADLKAKWEAIEDKPTFLLYSGGAVVALW 97
Query: 100 LSSIVVKAVDSVPVLPNILELVGLGYSGWFVYRYLLFKENREELANGFDALKKRITGNE 158
L+++VV A++SVP+LP ILELVGLGY+GWFVYRYLLFKE+R+ELA + LKK+I G E
Sbjct: 98 LTTVVVGAINSVPLLPKILELVGLGYTGWFVYRYLLFKESRKELATDIETLKKKIAGTE 156
>Os02g0731600 Conserved hypothetical protein
Length = 108
Score = 129 bits (324), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 59/81 (72%), Positives = 72/81 (88%)
Query: 78 WDAIENKSSVLFYGGGAIIAVWLSSIVVKAVDSVPVLPNILELVGLGYSGWFVYRYLLFK 137
WDA+ENKS+VL Y GGAIIA+WLSS++V AV+SVP+LP +ELVGLGY+GWFVYRYLLFK
Sbjct: 28 WDAVENKSTVLTYAGGAIIALWLSSVIVGAVNSVPLLPKFMELVGLGYTGWFVYRYLLFK 87
Query: 138 ENREELANGFDALKKRITGNE 158
E+R+ELA+ D+LKKRI G E
Sbjct: 88 ESRKELADDVDSLKKRIAGTE 108
>Os09g0465800 Conserved hypothetical protein
Length = 181
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 58/76 (76%)
Query: 82 ENKSSVLFYGGGAIIAVWLSSIVVKAVDSVPVLPNILELVGLGYSGWFVYRYLLFKENRE 141
EN + L YG A++ +W+SSIVV A+DSVP++P ++E+VGLG++ WF RYL+FKENR+
Sbjct: 103 ENSYTALVYGTSALVTIWISSIVVSALDSVPLVPQVMEVVGLGFTVWFTSRYLIFKENRD 162
Query: 142 ELANGFDALKKRITGN 157
EL ++KK+I G+
Sbjct: 163 ELITRIGSIKKQILGS 178
>Os06g0217700 Conserved hypothetical protein
Length = 223
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 55/76 (72%)
Query: 81 IENKSSVLFYGGGAIIAVWLSSIVVKAVDSVPVLPNILELVGLGYSGWFVYRYLLFKENR 140
+ S+ + YG GA IA W+ S VV A+DS+P+ P IL++VGLGY+ WF RYLLFKENR
Sbjct: 144 FKETSTFVMYGSGAFIAGWILSAVVSAIDSIPLFPKILQIVGLGYTIWFSTRYLLFKENR 203
Query: 141 EELANGFDALKKRITG 156
+EL D LK++ITG
Sbjct: 204 DELFVKVDDLKRKITG 219
>Os07g0469100 Similar to Thylakoid membrane phosphoprotein 14 kDa, chloroplast
precursor
Length = 150
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 53/82 (64%)
Query: 78 WDAIENKSSVLFYGGGAIIAVWLSSIVVKAVDSVPVLPNILELVGLGYSGWFVYRYLLFK 137
W +E+K +V G A++ +W + +KA+D +P+LP +LELVG+GY+GWF YR L+F+
Sbjct: 69 WAKVEDKYAVTAIGVAALVGLWTAIGAIKAIDRLPLLPGVLELVGIGYTGWFTYRNLIFQ 128
Query: 138 ENREELANGFDALKKRITGNEE 159
+RE L + + ITG+
Sbjct: 129 PDREALVSKIKSTYNEITGSSS 150
>Os02g0759900 Conserved hypothetical protein
Length = 205
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 56/74 (75%)
Query: 81 IENKSSVLFYGGGAIIAVWLSSIVVKAVDSVPVLPNILELVGLGYSGWFVYRYLLFKENR 140
I+ +++ YG GA++ +W+ S VV A+DS+P++P +LEL+G GYS WF RYLLFKE+R
Sbjct: 131 IQVTPTLVLYGSGALVVLWVLSSVVSAIDSIPLVPKVLELIGTGYSIWFTSRYLLFKESR 190
Query: 141 EELANGFDALKKRI 154
++L F+ LK+RI
Sbjct: 191 DKLFAKFEDLKERI 204
>Os10g0536500 Conserved hypothetical protein
Length = 172
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 44/64 (68%)
Query: 78 WDAIENKSSVLFYGGGAIIAVWLSSIVVKAVDSVPVLPNILELVGLGYSGWFVYRYLLFK 137
WD IE+K +V A + +W + VV A+D +P++P ++E VG+GYSGWF YR LLFK
Sbjct: 93 WDRIEDKYAVTTLAVAASLGMWSAGGVVSAIDRLPIVPGLMEAVGIGYSGWFAYRNLLFK 152
Query: 138 ENRE 141
+RE
Sbjct: 153 PDRE 156
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.138 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,520,091
Number of extensions: 108211
Number of successful extensions: 196
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 8
Length of query: 159
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 66
Effective length of database: 12,179,899
Effective search space: 803873334
Effective search space used: 803873334
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)