Os08g0430600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0430600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.86 | 0.277 | 9.49 | -0.253 | 1.08 | 0.811 | 0.332 | -0.901 | -0.423 | 13.4 | 21.16 | 861 | -- | -- |
| 35.33 | 0.277 | 9.47 | -0.073 | 1.06 | 0.763 | 0.43 | -- | -0.386 | 13.4 | 20.6 | 891 | -- | -- |
| 35.26 | 0.277 | 9.49 | -0.275 | 1.09 | 0.81 | -- | -1.04 | -0.431 | 13.4 | 21.04 | 889 | -- | -- |
| 35.97 | 0.279 | 9.46 | -0.0361 | 1.08 | 0.739 | -- | -- | -0.366 | 13.6 | 20.25 | 920 | -- | -- |
| 53.44 | 0.342 | 9.52 | -0.313 | -- | 1.52 | -- | -1.08 | -0.53 | -- | 21.04 | 889 | -- | -- |
| 48.24 | 0.326 | 9.44 | 0.178 | 0.976 | -- | 0.329 | -- | -0.222 | 14.1 | -- | -- | -- | -- |
| 48.64 | 0.327 | 9.44 | 0.188 | 0.977 | -- | -- | -- | -0.22 | 14.1 | -- | -- | -- | -- |
| 54.52 | 0.345 | 9.5 | -0.134 | -- | 1.47 | -- | -- | -0.478 | -- | 20.71 | 1747 | -- | -- |
| 36 | 0.279 | 9.46 | -- | 1.09 | 0.73 | -- | -- | -0.359 | 13.5 | 20.3 | 919 | -- | -- |
| 105.89 | 0.481 | 9.45 | 0.147 | -- | -- | -- | -- | -0.244 | -- | -- | -- | -- | -- |
| 49.57 | 0.329 | 9.44 | -- | 0.974 | -- | -- | -- | -0.241 | 14.1 | -- | -- | -- | -- |
| 54.98 | 0.346 | 9.49 | -- | -- | 1.44 | -- | -- | -0.459 | -- | 20.71 | 1747 | -- | -- |
| 106.46 | 0.482 | 9.45 | -- | -- | -- | -- | -- | -0.26 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.86 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 21 |
| 7 | 35.01 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 22 |
| 9 | 35.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 20 |
| 31 | 35.23 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 46 | 35.31 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 52 | 35.34 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 54 | 35.34 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 60 | 35.39 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 62 | 35.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 22 |
| 71 | 35.44 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 16 |
| 74 | 35.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 76 | 35.44 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 23 |
| 82 | 35.48 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 84 | 35.48 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 22 |
| 124 | 35.56 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 132 | 35.58 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 23 |
| 152 | 35.61 | temperature | 25 | 270 | > th | dose independent | rect. | 2 | 23 |
| 188 | 35.65 | temperature | 20 | 1440 | > th | dose dependent | sin | 18 | NA |
| 210 | 35.67 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 238 | 35.70 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 262 | 35.73 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 277 | 35.75 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 290 | 35.76 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 308 | 35.78 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 23 |
| 423 | 35.88 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 23 |
| 462 | 35.91 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 618 | 36.00 | temperature | 10 | 1440 | > th | dose dependent | sin | 19 | NA |
| 649 | 36.02 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 18 |
| 724 | 36.06 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 790 | 36.10 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 18 |
| 814 | 36.11 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 23 |
| 838 | 36.13 | temperature | 25 | 270 | > th | dose independent | rect. | 10 | 23 |
| 993 | 36.23 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |