BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0377500 Os08g0377500|AK061225
(262 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0377500 Protein of unknown function DUF599 family protein 513 e-146
Os09g0327000 Protein of unknown function DUF599 family protein 287 5e-78
Os02g0292800 Protein of unknown function DUF599 family protein 140 1e-33
Os08g0153900 Protein of unknown function DUF599 family protein 134 1e-31
Os08g0153800 Protein of unknown function DUF599 family protein 110 7e-25
Os08g0521000 Protein of unknown function DUF599 family protein 75 4e-14
Os09g0494600 Protein of unknown function DUF599 family protein 64 9e-11
>Os08g0377500 Protein of unknown function DUF599 family protein
Length = 262
Score = 513 bits (1322), Expect = e-146, Method: Compositional matrix adjust.
Identities = 252/262 (96%), Positives = 252/262 (96%)
Query: 1 MVVMMMQKSSLDLVLVPCGLVIMFGYHXXXXXXXXXXPAATVIGYENHNKLAWVRRMVQA 60
MVVMMMQKSSLDLVLVPCGLVIMFGYH PAATVIGYENHNKLAWVRRMVQA
Sbjct: 1 MVVMMMQKSSLDLVLVPCGLVIMFGYHLILLYRILRRPAATVIGYENHNKLAWVRRMVQA 60
Query: 61 SPDETGLALSVISSNISASTNLASLCIALGSLIGAWVSSTSKVFMTELVYGDRTQATATV 120
SPDETGLALSVISSNISASTNLASLCIALGSLIGAWVSSTSKVFMTELVYGDRTQATATV
Sbjct: 61 SPDETGLALSVISSNISASTNLASLCIALGSLIGAWVSSTSKVFMTELVYGDRTQATATV 120
Query: 121 KYISLLVCFLVSFTCFIHSARYYVQASFLITTLDSDVPASYIQHAVIRGGNFWSMGLRAL 180
KYISLLVCFLVSFTCFIHSARYYVQASFLITTLDSDVPASYIQHAVIRGGNFWSMGLRAL
Sbjct: 121 KYISLLVCFLVSFTCFIHSARYYVQASFLITTLDSDVPASYIQHAVIRGGNFWSMGLRAL 180
Query: 181 YFATTLLMWIFGPIPMFTCSVLMVFILHLLDSNSLPLHNHQFTIRKRHDQRALASTVVTR 240
YFATTLLMWIFGPIPMFTCSVLMVFILHLLDSNSLPLHNHQFTIRKRHDQRALASTVVTR
Sbjct: 181 YFATTLLMWIFGPIPMFTCSVLMVFILHLLDSNSLPLHNHQFTIRKRHDQRALASTVVTR 240
Query: 241 HPSPQNPILSNPVLSPVTFSIN 262
HPSPQNPILSNPVLSPVTFSIN
Sbjct: 241 HPSPQNPILSNPVLSPVTFSIN 262
>Os09g0327000 Protein of unknown function DUF599 family protein
Length = 415
Score = 287 bits (735), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 144/224 (64%), Positives = 166/224 (74%), Gaps = 6/224 (2%)
Query: 8 KSSLDLVLVPCGLVIMFGYHXXXXXXXXXXPAATVIGYENHNKLAWVRRMVQAS-PDETG 66
KSS+DLVLVPCGL IM GYH P TVIGYENHNKLAWV RM+QA+ P+E+
Sbjct: 153 KSSMDLVLVPCGLAIMVGYHLMLLHRILRHPHTTVIGYENHNKLAWVERMLQAAAPEESA 212
Query: 67 LALSVISSNISASTNLASLCIALGSLIGAWVSST---SKVFMTELVYGDRTQATATVKYI 123
LAL VIS NISA+T LASLCIALGSLIGAWVSS+ + L YGD + ATATVK +
Sbjct: 213 LALGVISDNISAATTLASLCIALGSLIGAWVSSSPAPGAAGVVVLGYGDGSHATATVKCV 272
Query: 124 SLLVCFLVSFTCFIHSARYYVQASFLITTLDSDV--PASYIQHAVIRGGNFWSMGLRALY 181
+LL CFL SFTCFI SARY+V ASFL++ L D P Q AV+RGGNFW+ GLRALY
Sbjct: 273 ALLACFLASFTCFIQSARYFVHASFLMSALAGDAAPPVGDAQRAVVRGGNFWAAGLRALY 332
Query: 182 FATTLLMWIFGPIPMFTCSVLMVFILHLLDSNSLPLHNHQFTIR 225
AT LLMW+FGP+PM CSVL V LH LD+NS+PLH+H+FT R
Sbjct: 333 LATALLMWVFGPVPMLACSVLTVAALHRLDANSMPLHHHRFTAR 376
>Os02g0292800 Protein of unknown function DUF599 family protein
Length = 250
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 117/241 (48%), Gaps = 20/241 (8%)
Query: 6 MQKSSLDLVLVPCGLVIMFGYHXXXXXXXXXXPAATVIGYENHNKLAWVRR-MVQASPDE 64
M+K LD VL+P G+ +M GYH PA TVIG N+ WVR M +AS
Sbjct: 1 MRKEELDYVLIPLGMALMVGYHAWLLLRIRRRPATTVIGVNAINRRIWVRHIMEEASGKH 60
Query: 65 TGLALSVISSNISASTNLASLCIALGSLIGAWVSSTSKVFMTE------LVYGDRTQATA 118
LA+ I +NI AST LAS I L SLI +SS LV G +
Sbjct: 61 AVLAVQTIRNNIMASTLLASTAITLSSLIAILMSSAGGGGGDGLLPGAPLVVGAAGETAL 120
Query: 119 TVKYISLLVCFLVSFTCFIHSARYYVQASFLITT--------LDSDVPASYIQHAVIRGG 170
+VK+ ++LVCFLV+F + S RYY S L+ + Y+ + RG
Sbjct: 121 SVKFFAILVCFLVAFLLNVQSIRYYSHTSTLVNVPVRLIQRRRRPGLAVDYVTATLNRGS 180
Query: 171 NFWSMGLRALYFATTLLMWIFGPIPMFTCSVLMVFILHLLDSNSLPLHNHQFTIRKRHDQ 230
FWS+G RA YF+ + +W+FGPIPMF MV L+ LD HQ HD+
Sbjct: 181 YFWSLGARAFYFSCPVFLWLFGPIPMFAACAAMVCALYFLDVCDDWEEEHQ-----DHDE 235
Query: 231 R 231
+
Sbjct: 236 Q 236
>Os08g0153900 Protein of unknown function DUF599 family protein
Length = 276
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 119/228 (52%), Gaps = 21/228 (9%)
Query: 5 MMQKSS--LDLVLVPCGLVIMFGYHXXXXXXXXXXPAATVIGYENHNKLAWVRR-MVQAS 61
MM+K+S LD VLVP G+ +M YH PA TVIG N+ WVR M +AS
Sbjct: 1 MMKKTSKELDYVLVPMGMAVMVAYHAWLLLRIRRRPATTVIGINAINRRIWVRHVMEEAS 60
Query: 62 PDETGLALSVISSNISASTNLASLCIALGSLIGAWVSS--TSKVF-------MTELVYGD 112
LA+ + ++I AST LAS+ I L SL+ A ++S +F E+V G
Sbjct: 61 GKHAVLAVQTMRNSIMASTVLASVAITLSSLVAALMASGVAHGIFSPGAGDGQGEIVVGA 120
Query: 113 RTQATATVKYISLLVCFLVSFTCFIHSARYYVQASFLITT---------LDSDVPASYIQ 163
+ ++K+ ++LVCFLV+F + S RYY L+ + Y+
Sbjct: 121 GGETALSIKFFAILVCFLVAFLLNVQSIRYYSHTGILVNVPLHAHRHRRRRPGLAVDYVT 180
Query: 164 HAVIRGGNFWSMGLRALYFATTLLMWIFGPIPMFTCSVLMVFILHLLD 211
+ RG FWS+G+RA YF+ + +W+FGPIPMF + MV L+ LD
Sbjct: 181 ATLNRGSYFWSLGVRAFYFSCPVFLWLFGPIPMFASCLAMVCALYFLD 228
>Os08g0153800 Protein of unknown function DUF599 family protein
Length = 235
Score = 110 bits (276), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 106/208 (50%), Gaps = 16/208 (7%)
Query: 20 LVIMFGYHXXXXXXXXXXPAATVIGYENHNKLAWVRR-MVQASPDETGLALSVISSNISA 78
+ +M YH PA TVIG N+ WVR M + S LA+ + ++I A
Sbjct: 1 MAVMVAYHAWLLLRIRRRPATTVIGINAINRRIWVRHVMEEPSGKHAVLAVQTMRNSIMA 60
Query: 79 STNLASLCIALGSLIGAWVSS--TSKVFMTE----LVYGDRTQATATVKYISLLVCFLVS 132
ST LAS+ I L SL+ A ++S +F++ + G +A +VK+ ++LVCFL++
Sbjct: 61 STVLASVAITLSSLVAALMASGVAHGIFVSSGHAVVGGGVAGEAELSVKFFAILVCFLLA 120
Query: 133 FTCFIHSARYYVQASFLITT---------LDSDVPASYIQHAVIRGGNFWSMGLRALYFA 183
F + S RYY L+ + Y+ + RG FWS+G+RA YF+
Sbjct: 121 FLLNVQSIRYYSHTGLLVNVPLHAHRHRRRRPGLAVDYVTATLNRGSYFWSLGVRAFYFS 180
Query: 184 TTLLMWIFGPIPMFTCSVLMVFILHLLD 211
+ +W+FGPIPMF + MV L+ LD
Sbjct: 181 CPVFLWLFGPIPMFAACLAMVCALYFLD 208
>Os08g0521000 Protein of unknown function DUF599 family protein
Length = 250
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 107/221 (48%), Gaps = 13/221 (5%)
Query: 4 MMMQKSSLDLVLVPCGLVIMFGYHXXXXXXXXXXPAATVIGYENHNKLAWVRRMVQASPD 63
M + S LDLVL+P G+V YH P ++ +G + WV M++ +
Sbjct: 1 MAWKDSYLDLVLIPAGIVFPIVYHVWLWHVVRRRPLSSTVGINTATRRLWVLGMMKDNEK 60
Query: 64 ETGLALSVISSNISASTNLASLCIALGSLIGAWVSSTSKVF--MTELVYGDRTQATATVK 121
+ L + + + I ST +A+ I + + A +SST V +++ V+G + +K
Sbjct: 61 KAVLVVQSMRNVIMGSTLMATTAILFCTGVAAILSSTYTVKKPLSDAVFGAHGEYMMALK 120
Query: 122 YISLLVCFLVSFTCFIHSARYYVQASFLITTLDSD-----------VPASYIQHAVIRGG 170
Y++LL+ FL+SF + QA+FL+ TL S V Y+ + RG
Sbjct: 121 YVTLLLAFLLSFLSHTTAICTLNQATFLLNTLSSSSSFAADIAGLPVTKDYVADVLERGF 180
Query: 171 NFWSMGLRALYFATTLLMWIFGPIPMFTCSVLMVFILHLLD 211
+G R Y LL+WIFGP+ CSV+M+ ILH +D
Sbjct: 181 LLNLVGNRLFYAGVPLLLWIFGPVLACLCSVVMIPILHSID 221
>Os09g0494600 Protein of unknown function DUF599 family protein
Length = 266
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 102/229 (44%), Gaps = 21/229 (9%)
Query: 4 MMMQKSSLDLVLVPCGLVIMFGYHXXXXXXXXXXPAATVIGYENHNKLAWVRRMVQASPD 63
M + S LDL+L+P L++ YH P T G + + W M + +
Sbjct: 1 MEWRDSFLDLILIPLSLLVPMAYHVWLWRAVRLTPLRTAAGINSATRRLWAISMTKDNEK 60
Query: 64 ETGLALSVISSNISASTNLASLCIALGSLIGAWVSSTS--KVFMTELVYGDRTQATATVK 121
+ L + + + I ST +A+ I + I A +SST K +++ V+G + +K
Sbjct: 61 KAVLVVQSLRNVIMGSTLVATTAILFCTGIAAVLSSTYTIKKPLSDAVFGAHGEYMMALK 120
Query: 122 YI-------------SLLVCFLVSFTCFIHSARYYVQASFLITTLDS----DVPAS--YI 162
Y+ SL +CFL + I+++ + +P++ Y+
Sbjct: 121 YVALLLLFLVAFLSHSLAICFLNEASFLINTSPTLLAGGDGAGDDGGRRLLGLPSTRDYM 180
Query: 163 QHAVIRGGNFWSMGLRALYFATTLLMWIFGPIPMFTCSVLMVFILHLLD 211
+ A+ +G +G R + LL+WIFGP+ F S++M+ IL+ LD
Sbjct: 181 EEALEKGFTLNFVGNRIFFAGVPLLLWIFGPLLAFLSSLVMIPILYNLD 229
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.135 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,714,821
Number of extensions: 280562
Number of successful extensions: 977
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 963
Number of HSP's successfully gapped: 7
Length of query: 262
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 163
Effective length of database: 11,866,615
Effective search space: 1934258245
Effective search space used: 1934258245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 155 (64.3 bits)