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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0292800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF599 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.65 (0.0271) R2 : 0.209
β1 : 0.467 (0.105) R2dD : 0.0355 R2D : -0.0385
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.2 (0.331) R2dE : 0.229 R2E : -0.367
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 18.3 (1.71) R2dD*E : 0.584 R2D*E : -0.0335
γ1 : -0.0869 (0.0568) R2dN8 : 0.00487 R2N8 : -0.0102
σ : 0.495
deviance : 112.76
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_____
C
peak time of C : --
E
wheather : wind
threshold : 0.7275
memory length : 98
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.93
open length of G : 1.12

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
112.34 0.498 2.63 0.539 0.113 -2.18 0.087 17.6 -0.0891 4.5 0.892 93 3.98 1.08
139.74 0.551 2.71 0.104 0.162 -0.503 0.698 -- -0.0833 6.08 0.02632 57 3.37 1.92
112.24 0.493 2.64 0.479 0.117 -2.25 -- 18.2 -0.0948 4.07 0.8227 98 3.95 1.09
140.14 0.551 2.71 0.0313 0.171 -0.357 -- -- -0.0908 5.14 1.3 46 3.48 2.3
112.76 0.495 2.65 0.467 -- -2.2 -- 18.3 -0.0869 -- 0.7275 98 3.93 1.12
140.42 0.556 2.71 0.026 0.115 -- 0.597 -- -0.0811 5.5 -- -- -- --
141.26 0.557 2.71 0.0275 0.121 -- -- -- -0.0839 4.74 -- -- -- --
141.55 0.554 2.71 0.0413 -- -0.225 -- -- -0.0902 -- 1.2 45 3.48 2.53
140.15 0.551 2.71 -- 0.17 -0.337 -- -- -0.104 4.83 1.3 46 3.43 2.55
142.04 0.557 2.71 0.032 -- -- -- -- -0.0808 -- -- -- -- --
141.28 0.556 2.71 -- 0.121 -- -- -- -0.087 4.74 -- -- -- --
141.59 0.554 2.71 -- -- -0.219 -- -- -0.0944 -- 1.2 45 3.38 3.12
142.06 0.556 2.71 -- -- -- -- -- -0.0843 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 112.75 wind 1.0 90 < th dose dependent rect. 4 1
2 114.60 wind 1.0 90 < th dose independent rect. 4 1
4 118.97 temperature 20.0 10 < th dose independent rect. 11 1
10 118.97 humidity 90.0 90 > th dose independent rect. 10 1
12 118.97 precipitation 0.1 90 > th dose independent rect. 10 1
29 118.97 temperature 20.0 90 < th dose dependent rect. 10 1
30 118.97 temperature 20.0 10 < th dose dependent rect. 11 1
36 118.97 humidity 90.0 90 > th dose dependent rect. 10 1
38 118.97 precipitation 0.1 90 > th dose dependent rect. 10 1
94 126.30 wind 1.0 1440 < th dose dependent rect. 15 1
97 126.77 wind 1.0 1440 < th dose independent rect. 15 1
101 127.07 atmosphere 1005.0 30 > th dose dependent rect. 5 1
106 128.06 atmosphere 1005.0 270 > th dose dependent rect. 2 4
109 128.19 atmosphere 1005.0 90 > th dose dependent rect. 4 3
127 129.45 temperature 20.0 270 < th dose independent rect. 2 4
129 129.56 temperature 20.0 30 < th dose independent rect. 4 16
137 129.66 wind 1.0 1440 > th dose independent rect. 15 1
138 129.71 temperature 20.0 10 < th dose independent rect. 4 2
140 129.72 temperature 20.0 90 < th dose independent rect. 4 1
141 129.72 temperature 15.0 720 < th dose dependent rect. 24 1
142 129.73 temperature 15.0 720 < th dose independent rect. 1 1
208 130.48 wind 1.0 90 < th dose dependent rect. 4 12
237 130.84 temperature 20.0 30 < th dose independent rect. 4 9
239 130.87 atmosphere 1005.0 30 > th dose dependent rect. 2 6
282 131.18 wind 1.0 90 < th dose independent rect. 6 1
318 131.38 temperature 20.0 90 < th dose independent sin 0 NA
322 131.41 temperature 20.0 90 > th dose independent sin 0 NA
369 131.74 temperature 25.0 90 < th dose dependent rect. 5 2
372 131.76 temperature 25.0 10 < th dose dependent rect. 5 3
386 131.86 temperature 25.0 10 < th dose dependent rect. 6 1
394 131.90 radiation 1.0 90 < th dose dependent rect. 5 11
397 131.91 temperature 25.0 270 < th dose dependent rect. 2 4
413 132.05 radiation 1.0 90 < th dose dependent rect. 5 7
419 132.08 radiation 1.0 90 < th dose dependent rect. 5 3
459 132.34 radiation 1.0 90 < th dose independent rect. 5 2
493 132.59 temperature 20.0 270 > th dose independent rect. 24 13
513 132.67 radiation 1.0 90 < th dose independent rect. 5 11
545 132.79 radiation 1.0 30 < th dose independent rect. 5 9
549 132.80 radiation 1.0 30 < th dose independent rect. 5 7
593 132.98 temperature 15.0 720 < th dose independent sin 6 NA
614 133.04 temperature 15.0 720 < th dose dependent sin 4 NA
625 133.07 humidity 90.0 90 > th dose dependent rect. 5 2
701 133.29 humidity 90.0 10 > th dose dependent rect. 6 1
713 133.35 atmosphere 1015.0 4320 > th dose dependent rect. 14 2
758 133.51 wind 1.0 720 < th dose dependent rect. 21 1
787 133.59 wind 1.0 90 < th dose dependent sin 5 NA
791 133.63 atmosphere 1005.0 90 > th dose independent rect. 5 2
808 133.67 temperature 25.0 30 < th dose dependent rect. 5 15
857 133.86 temperature 25.0 10 < th dose dependent rect. 5 11
957 134.06 temperature 15.0 720 > th dose independent sin 8 NA
977 134.10 radiation 10.0 4320 < th dose dependent rect. 12 1