Os08g0153900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF599 family protein.
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Os08g0153900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF599 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 438.3 | 0.984 | 6.18 | 2.86 | 1.4 | -2.44 | -1.54 | -4.69 | 1.39 | 4.29 | 14.7 | 152 | -- | -- |
| 450.31 | 0.996 | 6.08 | 3.53 | 1.54 | -2.5 | -0.195 | -- | 1.59 | 5.05 | 15 | 113 | -- | -- |
| 442.44 | 0.987 | 6.13 | 3.1 | 1.52 | -2.49 | -- | -3.06 | 1.47 | 5.06 | 14.7 | 152 | -- | -- |
| 450.19 | 0.995 | 6.08 | 3.53 | 1.53 | -2.51 | -- | -- | 1.59 | 5.07 | 15 | 98 | -- | -- |
| 519.24 | 1.06 | 6.1 | 3.49 | -- | -3.66 | -- | -2.65 | 1.68 | -- | 15.69 | 151 | -- | -- |
| 513.98 | 1.06 | 6.16 | 3.03 | 2.14 | -- | 0.114 | -- | 1.23 | 4.19 | -- | -- | -- | -- |
| 514.02 | 1.06 | 6.16 | 3.03 | 2.14 | -- | -- | -- | 1.23 | 4.19 | -- | -- | -- | -- |
| 526.14 | 1.07 | 6.06 | 3.82 | -- | -3.28 | -- | -- | 1.8 | -- | 18.7 | 149 | -- | -- |
| 747.64 | 1.28 | 6.21 | -- | 1.98 | -0.868 | -- | -- | 0.997 | 4.39 | 15 | 98 | -- | -- |
| 762.09 | 1.29 | 6.17 | 3.12 | -- | -- | -- | -- | 1.29 | -- | -- | -- | -- | -- |
| 756.01 | 1.29 | 6.24 | -- | 2.2 | -- | -- | -- | 0.891 | 4.16 | -- | -- | -- | -- |
| 857.4 | 1.36 | 6.22 | -- | -- | -2.43 | -- | -- | 1.1 | -- | 24.63 | 150 | -- | -- |
| 1018.24 | 1.49 | 6.25 | -- | -- | -- | -- | -- | 0.94 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 414.35 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 42 | 414.70 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 9 |
| 43 | 414.73 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 9 | 12 |
| 49 | 415.19 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 6 |
| 54 | 415.28 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 15 | 4 |
| 207 | 423.21 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 21 | 10 |
| 209 | 423.49 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 21 | 9 |
| 262 | 426.33 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 267 | 426.78 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 21 | 5 |
| 286 | 428.10 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 295 | 429.97 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 9 |
| 315 | 430.74 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 316 | 430.80 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 21 | 7 |
| 320 | 431.06 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 2 | 5 |
| 326 | 431.26 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 327 | 431.28 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 330 | 431.43 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 331 | 431.62 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 334 | 431.62 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 342 | 432.07 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 347 | 432.64 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 21 | 4 |
| 349 | 432.75 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 370 | 433.96 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 373 | 433.99 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 21 | 10 |
| 383 | 434.26 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 387 | 434.34 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 392 | 434.52 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 393 | 434.60 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 394 | 434.60 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 403 | 434.79 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 410 | 434.96 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 8 | 4 |
| 438 | 435.60 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 18 | 9 |
| 442 | 435.73 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 462 | 435.98 | wind | 7.0 | 4320 | < th | dose independent | rect. | 19 | 8 |
| 463 | 435.99 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 18 | 7 |
| 506 | 436.92 | wind | 7.0 | 4320 | < th | dose independent | rect. | 19 | 6 |
| 513 | 437.05 | wind | 9.0 | 4320 | < th | dose independent | rect. | 18 | 10 |
| 515 | 437.10 | wind | 9.0 | 4320 | > th | dose independent | rect. | 18 | 3 |
| 535 | 437.36 | wind | 9.0 | 4320 | > th | dose independent | rect. | 18 | 10 |
| 536 | 437.36 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 20 | 16 |
| 537 | 437.37 | temperature | 25.0 | 4320 | < th | dose independent | sin | 10 | NA |
| 556 | 437.59 | wind | 7.0 | 4320 | < th | dose independent | rect. | 19 | 4 |
| 557 | 437.59 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 558 | 437.61 | wind | 7.0 | 4320 | < th | dose independent | rect. | 19 | 2 |
| 619 | 438.34 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 653 | 438.70 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 688 | 439.06 | temperature | 15.0 | 90 | > th | dose dependent | no | NA | NA |
| 732 | 439.47 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 21 | 16 |
| 766 | 439.71 | temperature | 30.0 | 10 | < th | dose dependent | sin | 22 | NA |
| 783 | 439.83 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 20 | 10 |
| 785 | 439.84 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 7 | NA |
| 794 | 439.86 | temperature | 10.0 | 10 | > th | dose dependent | sin | 22 | NA |
| 795 | 439.87 | temperature | 25.0 | 4320 | > th | dose independent | sin | 10 | NA |
| 796 | 439.87 | temperature | 30.0 | 90 | < th | dose dependent | sin | 23 | NA |
| 821 | 440.01 | temperature | 15.0 | 10 | > th | dose dependent | no | NA | NA |
| 916 | 440.68 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 919 | 440.71 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 6 | NA |
| 983 | 441.14 | temperature | 10.0 | 90 | > th | dose dependent | sin | 23 | NA |
| 988 | 441.15 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 10 | 23 |