BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0153900 Os08g0153900|J065205L23
(276 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0153900 Protein of unknown function DUF599 family protein 486 e-138
Os08g0153800 Protein of unknown function DUF599 family protein 378 e-105
Os02g0292800 Protein of unknown function DUF599 family protein 356 1e-98
Os08g0377500 Protein of unknown function DUF599 family protein 146 2e-35
Os09g0327000 Protein of unknown function DUF599 family protein 139 3e-33
Os08g0521000 Protein of unknown function DUF599 family protein 118 6e-27
Os09g0494600 Protein of unknown function DUF599 family protein 105 3e-23
>Os08g0153900 Protein of unknown function DUF599 family protein
Length = 276
Score = 486 bits (1252), Expect = e-138, Method: Compositional matrix adjust.
Identities = 250/276 (90%), Positives = 250/276 (90%)
Query: 1 MMKKTSKELDYVLVPMGMAVMVAYHAWLLLRIRRRPATTVIGINAINRRIWVRHVMEEAS 60
MMKKTSKELDYVLVPMGMAVMVAYHAWLLLRIRRRPATTVIGINAINRRIWVRHVMEEAS
Sbjct: 1 MMKKTSKELDYVLVPMGMAVMVAYHAWLLLRIRRRPATTVIGINAINRRIWVRHVMEEAS 60
Query: 61 GKHAVLAVQTMRNSIMASTVLASVAITLSSLVAALMASGVAHGIFSPGAGDGQGEIVVGA 120
GKHAVLAVQTMRNSIMASTVLASVAITLSSLVAALMASGVAHGIFSPGAGDGQGEIVVGA
Sbjct: 61 GKHAVLAVQTMRNSIMASTVLASVAITLSSLVAALMASGVAHGIFSPGAGDGQGEIVVGA 120
Query: 121 GGETALSIKFFAILVCFLVAFLLNVQSIRYYSHTGILVNVPLHAXXXXXXXPGLAVDYVT 180
GGETALSIKFFAILVCFLVAFLLNVQSIRYYSHTGILVNVPLHA PGLAVDYVT
Sbjct: 121 GGETALSIKFFAILVCFLVAFLLNVQSIRYYSHTGILVNVPLHAHRHRRRRPGLAVDYVT 180
Query: 181 ATLNRGSYFWSLGVRAFYFSCPVFLWLFGPIPMFASCLAMVCALYFLDVYTEWDEKPXXX 240
ATLNRGSYFWSLGVRAFYFSCPVFLWLFGPIPMFASCLAMVCALYFLDVYTEWDEKP
Sbjct: 181 ATLNRGSYFWSLGVRAFYFSCPVFLWLFGPIPMFASCLAMVCALYFLDVYTEWDEKPEEE 240
Query: 241 XXXXXXXXXXXXXXXXCHEQPKMAAGNRVTPQQDVV 276
CHEQPKMAAGNRVTPQQDVV
Sbjct: 241 EELNGNGDGDDGGAAACHEQPKMAAGNRVTPQQDVV 276
>Os08g0153800 Protein of unknown function DUF599 family protein
Length = 235
Score = 378 bits (971), Expect = e-105, Method: Compositional matrix adjust.
Identities = 192/220 (87%), Positives = 197/220 (89%), Gaps = 7/220 (3%)
Query: 18 MAVMVAYHAWLLLRIRRRPATTVIGINAINRRIWVRHVMEEASGKHAVLAVQTMRNSIMA 77
MAVMVAYHAWLLLRIRRRPATTVIGINAINRRIWVRHVMEE SGKHAVLAVQTMRNSIMA
Sbjct: 1 MAVMVAYHAWLLLRIRRRPATTVIGINAINRRIWVRHVMEEPSGKHAVLAVQTMRNSIMA 60
Query: 78 STVLASVAITLSSLVAALMASGVAHGIFSPGAGDGQGEIVVGAG--GETALSIKFFAILV 135
STVLASVAITLSSLVAALMASGVAHGIF G VVG G GE LS+KFFAILV
Sbjct: 61 STVLASVAITLSSLVAALMASGVAHGIFV-----SSGHAVVGGGVAGEAELSVKFFAILV 115
Query: 136 CFLVAFLLNVQSIRYYSHTGILVNVPLHAXXXXXXXPGLAVDYVTATLNRGSYFWSLGVR 195
CFL+AFLLNVQSIRYYSHTG+LVNVPLHA PGLAVDYVTATLNRGSYFWSLGVR
Sbjct: 116 CFLLAFLLNVQSIRYYSHTGLLVNVPLHAHRHRRRRPGLAVDYVTATLNRGSYFWSLGVR 175
Query: 196 AFYFSCPVFLWLFGPIPMFASCLAMVCALYFLDVYTEWDE 235
AFYFSCPVFLWLFGPIPMFA+CLAMVCALYFLDVYTEWD+
Sbjct: 176 AFYFSCPVFLWLFGPIPMFAACLAMVCALYFLDVYTEWDK 215
>Os02g0292800 Protein of unknown function DUF599 family protein
Length = 250
Score = 356 bits (914), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 179/235 (76%), Positives = 198/235 (84%), Gaps = 6/235 (2%)
Query: 2 MKKTSKELDYVLVPMGMAVMVAYHAWLLLRIRRRPATTVIGINAINRRIWVRHVMEEASG 61
M+K +ELDYVL+P+GMA+MV YHAWLLLRIRRRPATTVIG+NAINRRIWVRH+MEEASG
Sbjct: 1 MRK--EELDYVLIPLGMALMVGYHAWLLLRIRRRPATTVIGVNAINRRIWVRHIMEEASG 58
Query: 62 KHAVLAVQTMRNSIMASTVLASVAITLSSLVAALMASGVAHGIFSPGAGDGQGEIVVGAG 121
KHAVLAVQT+RN+IMAST+LAS AITLSSL+A LM+S G +VVGA
Sbjct: 59 KHAVLAVQTIRNNIMASTLLASTAITLSSLIAILMSSAGGGGGDGLLP---GAPLVVGAA 115
Query: 122 GETALSIKFFAILVCFLVAFLLNVQSIRYYSHTGILVNVPLHAXXXXXXXPGLAVDYVTA 181
GETALS+KFFAILVCFLVAFLLNVQSIRYYSHT LVNVP+ PGLAVDYVTA
Sbjct: 116 GETALSVKFFAILVCFLVAFLLNVQSIRYYSHTSTLVNVPVR-LIQRRRRPGLAVDYVTA 174
Query: 182 TLNRGSYFWSLGVRAFYFSCPVFLWLFGPIPMFASCLAMVCALYFLDVYTEWDEK 236
TLNRGSYFWSLG RAFYFSCPVFLWLFGPIPMFA+C AMVCALYFLDV +W+E+
Sbjct: 175 TLNRGSYFWSLGARAFYFSCPVFLWLFGPIPMFAACAAMVCALYFLDVCDDWEEE 229
>Os08g0377500 Protein of unknown function DUF599 family protein
Length = 262
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 125/228 (54%), Gaps = 21/228 (9%)
Query: 1 MMKKTSKELDYVLVPMGMAVMVAYHAWLLLRIRRRPATTVIGINAINRRIWVRHVMEEAS 60
MM+K+S LD VLVP G+ +M YH LL RI RRPA TVIG N+ WVR M +AS
Sbjct: 5 MMQKSS--LDLVLVPCGLVIMFGYHLILLYRILRRPAATVIGYENHNKLAWVRR-MVQAS 61
Query: 61 GKHAVLAVQTMRNSIMASTVLASVAITLSSLVAALMASGVAHGIFSPGAGDGQGEIVVGA 120
LA+ + ++I AST LAS+ I L SL+ A ++S +F E+V G
Sbjct: 62 PDETGLALSVISSNISASTNLASLCIALGSLIGAWVSS--TSKVF-------MTELVYGD 112
Query: 121 GGETALSIKFFAILVCFLVAFLLNVQSIRYYSHTGILVNVPLHAXXXXXXXPGLAVDYVT 180
+ ++K+ ++LVCFLV+F + S RYY L+ + Y+
Sbjct: 113 RTQATATVKYISLLVCFLVSFTCFIHSARYYVQASFLITT---------LDSDVPASYIQ 163
Query: 181 ATLNRGSYFWSLGVRAFYFSCPVFLWLFGPIPMFASCLAMVCALYFLD 228
+ RG FWS+G+RA YF+ + +W+FGPIPMF + MV L+ LD
Sbjct: 164 HAVIRGGNFWSMGLRALYFATTLLMWIFGPIPMFTCSVLMVFILHLLD 211
>Os09g0327000 Protein of unknown function DUF599 family protein
Length = 415
Score = 139 bits (349), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 124/229 (54%), Gaps = 17/229 (7%)
Query: 2 MKKTSKELDYVLVPMGMAVMVAYHAWLLLRIRRRPATTVIGINAINRRIWVRHVMEEASG 61
M +D VLVP G+A+MV YH LL RI R P TTVIG N+ WV +++ A+
Sbjct: 149 MHNCKSSMDLVLVPCGLAIMVGYHLMLLHRILRHPHTTVIGYENHNKLAWVERMLQAAAP 208
Query: 62 KHAVLAVQTMRNSIMASTVLASVAITLSSLVAALMASGVAHGIFSPGAGDGQGEIVV--G 119
+ + LA+ + ++I A+T LAS+ I L SL+ A ++S A PGA G +V+ G
Sbjct: 209 EESALALGVISDNISAATTLASLCIALGSLIGAWVSSSPA-----PGAA---GVVVLGYG 260
Query: 120 AGGETALSIKFFAILVCFLVAFLLNVQSIRYYSHTGILVNVPLHAXXXXXXXPGLAVDYV 179
G ++K A+L CFL +F +QS RY+ H L++ A P V
Sbjct: 261 DGSHATATVKCVALLACFLASFTCFIQSARYFVHASFLMS----ALAGDAAPP---VGDA 313
Query: 180 TATLNRGSYFWSLGVRAFYFSCPVFLWLFGPIPMFASCLAMVCALYFLD 228
+ RG FW+ G+RA Y + + +W+FGP+PM A + V AL+ LD
Sbjct: 314 QRAVVRGGNFWAAGLRALYLATALLMWVFGPVPMLACSVLTVAALHRLD 362
>Os08g0521000 Protein of unknown function DUF599 family protein
Length = 250
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 124/223 (55%), Gaps = 10/223 (4%)
Query: 9 LDYVLVPMGMAVMVAYHAWLLLRIRRRPATTVIGINAINRRIWVRHVMEEASGKHAVLAV 68
LD VL+P G+ + YH WL +RRRP ++ +GIN RR+WV +M++ + K AVL V
Sbjct: 8 LDLVLIPAGIVFPIVYHVWLWHVVRRRPLSSTVGINTATRRLWVLGMMKD-NEKKAVLVV 66
Query: 69 QTMRNSIMASTVLASVAITLSSLVAALMASGVAHGIFSPGAGDGQGEIVVGAGGETALSI 128
Q+MRN IM ST++A+ AI + VAA+++S + + P + V GA GE +++
Sbjct: 67 QSMRNVIMGSTLMATTAILFCTGVAAILSS--TYTVKKP-----LSDAVFGAHGEYMMAL 119
Query: 129 KFFAILVCFLVAFLLNVQSIRYYSHTGILVNVPLHAXXXXXXXPGLAV--DYVTATLNRG 186
K+ +L+ FL++FL + +I + L+N + GL V DYV L RG
Sbjct: 120 KYVTLLLAFLLSFLSHTTAICTLNQATFLLNTLSSSSSFAADIAGLPVTKDYVADVLERG 179
Query: 187 SYFWSLGVRAFYFSCPVFLWLFGPIPMFASCLAMVCALYFLDV 229
+G R FY P+ LW+FGP+ + M+ L+ +DV
Sbjct: 180 FLLNLVGNRLFYAGVPLLLWIFGPVLACLCSVVMIPILHSIDV 222
>Os09g0494600 Protein of unknown function DUF599 family protein
Length = 266
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 118/238 (49%), Gaps = 32/238 (13%)
Query: 9 LDYVLVPMGMAVMVAYHAWLLLRIRRRPATTVIGINAINRRIWVRHVMEEASGKHAVLAV 68
LD +L+P+ + V +AYH WL +R P T GIN+ RR+W M + + K AVL V
Sbjct: 8 LDLILIPLSLLVPMAYHVWLWRAVRLTPLRTAAGINSATRRLWAIS-MTKDNEKKAVLVV 66
Query: 69 QTMRNSIMASTVLASVAITLSSLVAALMASGVAHGIFSPGAGDGQGEIVVGAGGETALSI 128
Q++RN IM ST++A+ AI + +AA+++S + I P + V GA GE +++
Sbjct: 67 QSLRNVIMGSTLVATTAILFCTGIAAVLSS--TYTIKKP-----LSDAVFGAHGEYMMAL 119
Query: 129 KFF-------------AILVCFL--VAFLLNVQSIRYYSHTGILVNVPLHAXXXXXXXPG 173
K+ ++ +CFL +FL+N + +L G
Sbjct: 120 KYVALLLLFLVAFLSHSLAICFLNEASFLIN-------TSPTLLAGGDGAGDDGGRRLLG 172
Query: 174 L--AVDYVTATLNRGSYFWSLGVRAFYFSCPVFLWLFGPIPMFASCLAMVCALYFLDV 229
L DY+ L +G +G R F+ P+ LW+FGP+ F S L M+ LY LDV
Sbjct: 173 LPSTRDYMEEALEKGFTLNFVGNRIFFAGVPLLLWIFGPLLAFLSSLVMIPILYNLDV 230
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.138 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,230,280
Number of extensions: 302612
Number of successful extensions: 1436
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1422
Number of HSP's successfully gapped: 7
Length of query: 276
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 177
Effective length of database: 11,866,615
Effective search space: 2100390855
Effective search space used: 2100390855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 155 (64.3 bits)