Os08g0377500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF599 family protein.
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Os08g0377500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF599 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 354.93 | 0.885 | 5.06 | -2.71 | 0.714 | 1.01 | -1.16 | 2.28 | -1.3 | 7.01 | 1005 | 4393 | -- | -- |
| 361.83 | 0.886 | 5.05 | -2.65 | 0.726 | 1.12 | -1.22 | -- | -1.34 | 6.99 | 1005 | 4353 | -- | -- |
| 358.29 | 0.882 | 5.06 | -2.74 | 0.715 | 0.993 | -- | 2.33 | -1.3 | 6.79 | 1005 | 4360 | -- | -- |
| 365.66 | 0.891 | 5.05 | -2.68 | 0.726 | 1.11 | -- | -- | -1.33 | 6.8 | 1005 | 4347 | -- | -- |
| 384.98 | 0.914 | 5.08 | -2.72 | -- | 0.973 | -- | 2.45 | -1.28 | -- | 1005 | 4365 | -- | -- |
| 399.39 | 0.937 | 5 | -2.76 | 0.709 | -- | -1.13 | -- | -1.11 | 6.95 | -- | -- | -- | -- |
| 402.64 | 0.94 | 5 | -2.78 | 0.709 | -- | -- | -- | -1.1 | 6.77 | -- | -- | -- | -- |
| 393.17 | 0.924 | 5.07 | -2.67 | -- | 1.1 | -- | -- | -1.32 | -- | 1005 | 4360 | -- | -- |
| 544.21 | 1.09 | 5.01 | -- | 0.732 | 1.36 | -- | -- | -1.15 | 7.07 | 1006 | 4316 | -- | -- |
| 428.9 | 0.968 | 5.01 | -2.76 | -- | -- | -- | -- | -1.09 | -- | -- | -- | -- | -- |
| 606.2 | 1.15 | 4.93 | -- | 0.677 | -- | -- | -- | -0.794 | 7.02 | -- | -- | -- | -- |
| 571.47 | 1.11 | 5.02 | -- | -- | 1.32 | -- | -- | -1.13 | -- | 1006 | 4320 | -- | -- |
| 630.31 | 1.17 | 4.94 | -- | -- | -- | -- | -- | -0.783 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 347.52 | humidity | 60 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 2 | 348.08 | humidity | 60 | 1440 | < th | dose dependent | rect. | 15 | 3 |
| 5 | 349.11 | humidity | 60 | 1440 | < th | dose dependent | rect. | 15 | 19 |
| 7 | 349.20 | humidity | 80 | 4320 | > th | dose dependent | rect. | 12 | 2 |
| 8 | 349.21 | humidity | 60 | 720 | < th | dose dependent | rect. | 17 | 17 |
| 22 | 349.47 | temperature | 20 | 90 | > th | dose dependent | rect. | 16 | 13 |
| 24 | 350.07 | humidity | 60 | 720 | < th | dose independent | rect. | 17 | 16 |
| 25 | 350.43 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 24 | 9 |
| 28 | 350.88 | temperature | 30 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 43 | 350.97 | humidity | 50 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 64 | 351.59 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 19 | 8 |
| 74 | 351.90 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 19 |
| 86 | 352.31 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 19 |
| 96 | 352.49 | humidity | 60 | 1440 | < th | dose dependent | sin | 12 | NA |
| 113 | 352.59 | humidity | 50 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 123 | 352.78 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 136 | 353.02 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 19 | 9 |
| 184 | 353.19 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 13 |
| 186 | 353.20 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 16 |
| 191 | 353.21 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 19 | 20 |
| 224 | 353.32 | humidity | 60 | 720 | < th | dose independent | sin | 11 | NA |
| 250 | 353.46 | humidity | 50 | 270 | > th | dose independent | rect. | 10 | 14 |
| 258 | 353.52 | humidity | 50 | 1440 | > th | dose independent | sin | 11 | NA |
| 259 | 353.52 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 328 | 353.74 | atmosphere | 1005 | 4320 | > th | dose independent | sin | 11 | NA |
| 365 | 354.06 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 19 | 21 |
| 403 | 354.20 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 407 | 354.26 | humidity | 90 | 4320 | > th | dose independent | rect. | 2 | 8 |
| 419 | 354.35 | atmosphere | 1005 | 4320 | < th | dose independent | sin | 11 | NA |
| 443 | 354.42 | humidity | 90 | 4320 | > th | dose independent | rect. | 4 | 5 |
| 462 | 354.51 | temperature | 20 | 90 | > th | dose dependent | rect. | 16 | 17 |
| 514 | 354.86 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 12 | 20 |
| 518 | 354.88 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 12 | 18 |
| 521 | 354.89 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 12 | 20 |
| 697 | 355.41 | humidity | 80 | 4320 | > th | dose dependent | rect. | 10 | 5 |
| 702 | 355.43 | atmosphere | 1005 | 4320 | > th | dose independent | no | NA | NA |
| 703 | 355.43 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 7 | 23 |
| 740 | 355.50 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 5 | 23 |
| 746 | 355.53 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 7 | 23 |
| 747 | 355.54 | atmosphere | 1005 | 4320 | < th | dose independent | no | NA | NA |
| 756 | 355.56 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 769 | 355.60 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 24 | 23 |
| 774 | 355.61 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 809 | 355.67 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 3 | 23 |
| 811 | 355.67 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 24 | 23 |
| 897 | 355.90 | humidity | 90 | 4320 | > th | dose independent | rect. | 2 | 12 |