BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0377500 Os08g0377500|AK061225
(262 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G46060.1 | chr5:18681533-18682459 FORWARD LENGTH=249 200 7e-52
AT3G18215.1 | chr3:6240968-6242358 FORWARD LENGTH=245 156 1e-38
AT5G24600.1 | chr5:8421790-8423342 REVERSE LENGTH=249 144 5e-35
AT4G31330.1 | chr4:15202354-15203151 FORWARD LENGTH=240 99 2e-21
AT5G10580.1 | chr5:3347511-3348657 FORWARD LENGTH=247 97 1e-20
AT5G24790.1 | chr5:8512076-8513064 FORWARD LENGTH=247 81 5e-16
AT5G43180.1 | chr5:17336425-17337816 REVERSE LENGTH=240 55 3e-08
>AT5G46060.1 | chr5:18681533-18682459 FORWARD LENGTH=249
Length = 248
Score = 200 bits (508), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 112/228 (49%), Positives = 153/228 (67%), Gaps = 5/228 (2%)
Query: 4 MMMQKSSLDLVLVPCGLVIMFGYHXXXXXXXXXXPAATVIGYENHNKLAWVRRMVQASPD 63
+ ++K LDLVLVP GL+I+ YH P T+IG+ N +K WV R++QA D
Sbjct: 3 IFVKKEYLDLVLVPFGLIIVLSYHLFLLYRILYFPYHTIIGFMNIDKSIWVDRIMQARKD 62
Query: 64 ETGLALSVISSNISASTNLASLCIALGSLIGAWVSSTS---KVFMTELVYGDRTQATATV 120
E G AL+V+SS+ISAST +AS+ + L SLIGAW+ S+ VF +YGD + T +
Sbjct: 63 ELGGALTVLSSSISASTFMASIALTLSSLIGAWIGSSPVSMTVFTGHFIYGDTSSITMVI 122
Query: 121 KYISLLVCFLVSFTCFIHSARYYVQASFLITTLDSDVPASYIQHAVIRGGNFWSMGLRAL 180
KY SLL+CFLV+F CFI S R ++ A++LITT D+P ++ V+RGGN+WS+GLRAL
Sbjct: 123 KYTSLLICFLVAFCCFIQSTRCFLHANYLITTPGEDIPPDMVKRFVLRGGNYWSLGLRAL 182
Query: 181 YFATTLLMWIFGPIPMFTCSVLMVFILHLLDSNSL--PLHNHQFTIRK 226
Y A LL+W+FGP+PMF SVLMV L+ LDSNS+ PL++ F +
Sbjct: 183 YLALDLLLWLFGPVPMFINSVLMVICLYFLDSNSVAQPLYHRTFEAEQ 230
>AT3G18215.1 | chr3:6240968-6242358 FORWARD LENGTH=245
Length = 244
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/231 (39%), Positives = 125/231 (54%), Gaps = 6/231 (2%)
Query: 5 MMQKSSLDLVLVPCGLVIMFGYHXXXXXXXXXXPAATVIGYENHNKLAWVRRMVQASPDE 64
M + SLDLVLVP GLV+M YH P TVI ++ WV M+
Sbjct: 1 MWTEESLDLVLVPTGLVVMVAYHVWLVYAILHRPKLTVIALNAESRRQWVFSMMTEPLKN 60
Query: 65 TGLALSVISSNISASTNLASLCIALGSLIGAWVSSTSKVFM--TELVYGDRTQATATVKY 122
LA+ I +NI AST LA+ I L S+IG +VS++S T L+YG ++ A+ K
Sbjct: 61 GTLAVQTIRNNIMASTLLATTAITLCSIIGVFVSNSSSSKSTATNLIYGSKSPRLASFKN 120
Query: 123 ISLLVCFLVSFTCFIHSARYYVQASFLIT---TLDSDVPASYIQHAVIRGGNFWSMGLRA 179
++L+CFL++F C I S RYY SFL+T + Y+ + R FWS+GLRA
Sbjct: 121 FAILICFLMAFLCNIQSIRYYAHVSFLVTVPVSRGKREHCEYVSRNLNRASYFWSLGLRA 180
Query: 180 LYFATTLLMWIFGPIPMFTCSVLMVFILHLLD-SNSLPLHNHQFTIRKRHD 229
YF+ L +W FGPIPMF C +M IL+ LD + S H H + R+ D
Sbjct: 181 FYFSFPLFLWTFGPIPMFVCCCMMSSILYFLDTTTSFTRHLHSQSFRETAD 231
>AT5G24600.1 | chr5:8421790-8423342 REVERSE LENGTH=249
Length = 248
Score = 144 bits (363), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 83/221 (37%), Positives = 118/221 (53%), Gaps = 15/221 (6%)
Query: 6 MQKSSLDLVLVPCGLVIMFGYHXXXXXXXXXXPAATVIGYENHNKLAWVRRMVQASPDET 65
M++ LD LVP GL +M YH P++TV+G N+ WV+ M++ S
Sbjct: 1 MKREYLDYTLVPLGLALMVFYHLWLLYRIIHRPSSTVVGLNAFNRRLWVQAMMEDSSKNG 60
Query: 66 GLALSVISSNISASTNLASLCIALGSLIGAWVSSTSKVFMTELVYGDRTQATATVKYISL 125
LA+ + +NI AST LAS I L SLI ++S + V+GD++ ++K+ ++
Sbjct: 61 VLAVQTLRNNIMASTLLASTAIMLCSLIAVLMTSATGERSVWFVFGDKSDRAFSLKFFAI 120
Query: 126 LVCFLVSFTCFIHSARYYVQASFLITTLDSDVPA---------------SYIQHAVIRGG 170
LVCFLV+F + S RYY AS LI + A Y+ V RG
Sbjct: 121 LVCFLVAFLLNVQSIRYYSHASILINVPFKQLMAVSSGGRGNGSLMINQDYVAATVNRGS 180
Query: 171 NFWSMGLRALYFATTLLMWIFGPIPMFTCSVLMVFILHLLD 211
FWS+GLRA YF++ L +WIFGPIPMF ++V L+ LD
Sbjct: 181 YFWSLGLRAFYFSSPLFLWIFGPIPMFITCCVLVCSLYFLD 221
>AT4G31330.1 | chr4:15202354-15203151 FORWARD LENGTH=240
Length = 239
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 113/219 (51%), Gaps = 11/219 (5%)
Query: 4 MMMQKSSLDLVLVPCGLVIMFGYHXXXXXXXXXXPAATVIGYENHNKLAWVRRMVQASPD 63
M ++ LD++LVP GL++ YH P T+IG + WV +++ +
Sbjct: 1 MEWRECYLDVILVPLGLMVYASYHVYLWHKLRTQPLTTIIGTNARARRFWVASIIKDNDK 60
Query: 64 ETGLALSVISSNISASTNLASLCIALGSLIGAWVSSTSKVF--MTELVYGDRTQATATVK 121
+ LA+ + + I ST +A+ I L + + A +SST V + + V+G R + +K
Sbjct: 61 KNILAVQTLRNCIMGSTLMATTSILLCAGLAAVLSSTYAVKKPLNDAVFGARGEFMVALK 120
Query: 122 YISLLVCFLVSFTCFIHSARYYVQASFLITT------LDSDV---PASYIQHAVIRGGNF 172
Y+++L FL SF S R+ Q + LI T L+ ++ Y+ + RG
Sbjct: 121 YVTILTIFLFSFFSHSLSIRFINQVNILINTPFPPEELEDEMMMTAEEYVAELLERGFIL 180
Query: 173 WSMGLRALYFATTLLMWIFGPIPMFTCSVLMVFILHLLD 211
++G R Y A L++WIFGP+ +F CSV+MV +L+ LD
Sbjct: 181 NTVGNRLFYAALPLMLWIFGPVLVFLCSVVMVPLLYNLD 219
>AT5G10580.1 | chr5:3347511-3348657 FORWARD LENGTH=247
Length = 246
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 109/221 (49%), Gaps = 13/221 (5%)
Query: 4 MMMQKSSLDLVLVPCGLVIMFGYHXXXXXXXXXXPAATVIGYENHNKLAWVRRMVQASPD 63
M +K LD VLVP L++MFGYH P T++G + + +WV +++ +
Sbjct: 1 MEWEKWYLDAVLVPSALLMMFGYHIYLWYKVRTDPFCTIVGTNSRARRSWVAAIMKDNEK 60
Query: 64 ETGLALSVISSNISASTNLASLCIALGSLIGAWVSSTS--KVFMTELVYGDRTQATATVK 121
+ LA+ + + I T +A+ CI L + + A +SST K + + VYG T +K
Sbjct: 61 KNILAVQTLRNTIMGGTLMATTCILLCAGLAAVLSSTYSIKKPLNDAVYGAHGDFTVALK 120
Query: 122 YISLLVCFLVSFTCFIHSARYYVQASFLIT-----------TLDSDVPASYIQHAVIRGG 170
Y+++L FL +F S R+ Q + LI + S V Y+ + +
Sbjct: 121 YVTILTIFLFAFFSHSLSIRFINQVNILINAPQEPFSDDFGEIGSFVTPEYVSELLEKAF 180
Query: 171 NFWSMGLRALYFATTLLMWIFGPIPMFTCSVLMVFILHLLD 211
++G R Y L++WIFGP+ +F S L++ +L+ LD
Sbjct: 181 LLNTVGNRLFYMGLPLMLWIFGPVLVFLSSALIIPVLYNLD 221
>AT5G24790.1 | chr5:8512076-8513064 FORWARD LENGTH=247
Length = 246
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 109/218 (50%), Gaps = 10/218 (4%)
Query: 4 MMMQKSSLDLVLVPCGLVIMFGYHXXXXXXXXXXPAATVIGYENHNKLAWVRRMVQASPD 63
M +K LD +LVP L++M YH P +T++G +H + W+ M++ +
Sbjct: 1 MEWKKWYLDAILVPLALMMMICYHIYLSFMVRTNPFSTLLGINSHGRRIWISAMIKDNQK 60
Query: 64 ETGLALSVISSNISASTNLASLCIALGSLIGAWVSSTSKVF--MTELVYGDRTQATATVK 121
LA+ + + + +T +A+ C+ L + + A +SST + + + V+G ++K
Sbjct: 61 TNILAVQTLRNIVMGATLMATTCVLLCAGLAAVLSSTYSIKKPLNDAVFGAHGDFAISIK 120
Query: 122 YISLLVCFLVSFTCFIHSARYYVQASFLITTLDSD--------VPASYIQHAVIRGGNFW 173
Y+++L F+ SF S R+ Q + L+ + D + + ++ +G
Sbjct: 121 YLTILTIFIFSFFFHSLSIRFLNQVAILVNIPNLDPNPSGCVFLTSEHVSEMFEKGIFLN 180
Query: 174 SMGLRALYFATTLLMWIFGPIPMFTCSVLMVFILHLLD 211
++G R Y +L++WIFGPI +F ++MV +L LD
Sbjct: 181 TVGNRLFYAGFSLMLWIFGPILVFFSVLVMVLVLSHLD 218
>AT5G43180.1 | chr5:17336425-17337816 REVERSE LENGTH=240
Length = 239
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 100/228 (43%), Gaps = 22/228 (9%)
Query: 5 MMQKSSLDLVLVPCGLVIMFGYHXXXXXXXXXXPAATVIGYENHNKLAWVRRMVQASPDE 64
M K D ++VP L+I GYH P+ T +G ++ + +W R ++ D+
Sbjct: 1 MRMKIDTDSIVVPLSLLIAVGYHVFLWNTFKHNPSRTSLGIDSSKRKSWFRD-IKEGDDK 59
Query: 65 TG-LALSVISSNISASTNLASLCIALGSLIGAWVSSTSKV-----FMTELVYGDRTQATA 118
TG LA+ + + + A++ I + + A ++ K ++ +G +
Sbjct: 60 TGMLAVQSLRNKKMVTILTATIAILIFLSLAAVTNNAFKASHLITAADDIFFGSQNAKIF 119
Query: 119 TVKYISLLVCFLVSFTCFIHSARYYVQASFLITTL----DSDVPASY----------IQH 164
+KY S + SF + Y + A FLI + + D +Y
Sbjct: 120 VLKYASASLLLAASFFFSSIALSYLMDAIFLINAIAKKHEGDCDCAYDITGTSSFREYTR 179
Query: 165 AVIRGGNFWSM-GLRALYFATTLLMWIFGPIPMFTCSVLMVFILHLLD 211
V+ G F +M G R + + LL+W+FGP+P+ S+ +V++L+ D
Sbjct: 180 LVLERGFFMAMVGNRVMCVSIPLLLWMFGPLPVLASSLGLVWVLYQFD 227
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.135 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,981,128
Number of extensions: 180779
Number of successful extensions: 658
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 645
Number of HSP's successfully gapped: 7
Length of query: 262
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 165
Effective length of database: 8,447,217
Effective search space: 1393790805
Effective search space used: 1393790805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 111 (47.4 bits)