BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0153900 Os08g0153900|J065205L23
(276 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G24600.1 | chr5:8421790-8423342 REVERSE LENGTH=249 263 5e-71
AT3G18215.1 | chr3:6240968-6242358 FORWARD LENGTH=245 206 9e-54
AT4G31330.1 | chr4:15202354-15203151 FORWARD LENGTH=240 145 2e-35
AT5G10580.1 | chr5:3347511-3348657 FORWARD LENGTH=247 130 7e-31
AT5G46060.1 | chr5:18681533-18682459 FORWARD LENGTH=249 125 3e-29
AT5G24790.1 | chr5:8512076-8513064 FORWARD LENGTH=247 124 7e-29
AT5G43180.1 | chr5:17336425-17337816 REVERSE LENGTH=240 83 2e-16
>AT5G24600.1 | chr5:8421790-8423342 REVERSE LENGTH=249
Length = 248
Score = 263 bits (673), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 138/234 (58%), Positives = 170/234 (72%), Gaps = 18/234 (7%)
Query: 2 MKKTSKELDYVLVPMGMAVMVAYHAWLLLRIRRRPATTVIGINAINRRIWVRHVMEEASG 61
MK+ + LDY LVP+G+A+MV YH WLL RI RP++TV+G+NA NRR+WV+ +ME++S
Sbjct: 1 MKR--EYLDYTLVPLGLALMVFYHLWLLYRIIHRPSSTVVGLNAFNRRLWVQAMMEDSS- 57
Query: 62 KHAVLAVQTMRNSIMASTVLASVAITLSSLVAALMASGVAHGIFSPGAGDGQGEIVVGAG 121
K+ VLAVQT+RN+IMAST+LAS AI L SL+A LM S G+ V G
Sbjct: 58 KNGVLAVQTLRNNIMASTLLASTAIMLCSLIAVLMTSA---------TGERSVWFVFGDK 108
Query: 122 GETALSIKFFAILVCFLVAFLLNVQSIRYYSHTGILVNVP---LHAXXXXXXXPG---LA 175
+ A S+KFFAILVCFLVAFLLNVQSIRYYSH IL+NVP L A G +
Sbjct: 109 SDRAFSLKFFAILVCFLVAFLLNVQSIRYYSHASILINVPFKQLMAVSSGGRGNGSLMIN 168
Query: 176 VDYVTATLNRGSYFWSLGVRAFYFSCPVFLWLFGPIPMFASCLAMVCALYFLDV 229
DYV AT+NRGSYFWSLG+RAFYFS P+FLW+FGPIPMF +C +VC+LYFLD+
Sbjct: 169 QDYVAATVNRGSYFWSLGLRAFYFSSPLFLWIFGPIPMFITCCVLVCSLYFLDL 222
>AT3G18215.1 | chr3:6240968-6242358 FORWARD LENGTH=245
Length = 244
Score = 206 bits (525), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 112/231 (48%), Positives = 143/231 (61%), Gaps = 14/231 (6%)
Query: 5 TSKELDYVLVPMGMAVMVAYHAWLLLRIRRRPATTVIGINAINRRIWVRHVMEEASGKHA 64
T + LD VLVP G+ VMVAYH WL+ I RP TVI +NA +RR WV +M E K+
Sbjct: 3 TEESLDLVLVPTGLVVMVAYHVWLVYAILHRPKLTVIALNAESRRQWVFSMMTEPL-KNG 61
Query: 65 VLAVQTMRNSIMASTVLASVAITLSSLVAALMASGVAHGIFSPGAGDGQGEIVVGAGGET 124
LAVQT+RN+IMAST+LA+ AITL S++ +++ + + ++ G+
Sbjct: 62 TLAVQTIRNNIMASTLLATTAITLCSIIGVFVSNSSS-------SKSTATNLIYGSKSPR 114
Query: 125 ALSIKFFAILVCFLVAFLLNVQSIRYYSHTGILVNVPLHAXXXXXXXPGLAVDYVTATLN 184
S K FAIL+CFL+AFL N+QSIRYY+H LV VP+ +YV+ LN
Sbjct: 115 LASFKNFAILICFLMAFLCNIQSIRYYAHVSFLVTVPVSRGKREH------CEYVSRNLN 168
Query: 185 RGSYFWSLGVRAFYFSCPVFLWLFGPIPMFASCLAMVCALYFLDVYTEWDE 235
R SYFWSLG+RAFYFS P+FLW FGPIPMF C M LYFLD T +
Sbjct: 169 RASYFWSLGLRAFYFSFPLFLWTFGPIPMFVCCCMMSSILYFLDTTTSFTR 219
>AT4G31330.1 | chr4:15202354-15203151 FORWARD LENGTH=240
Length = 239
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 129/228 (56%), Gaps = 8/228 (3%)
Query: 9 LDYVLVPMGMAVMVAYHAWLLLRIRRRPATTVIGINAINRRIWVRHVMEEASGKHAVLAV 68
LD +LVP+G+ V +YH +L ++R +P TT+IG NA RR WV ++++ K+ +LAV
Sbjct: 8 LDVILVPLGLMVYASYHVYLWHKLRTQPLTTIIGTNARARRFWVASIIKDNDKKN-ILAV 66
Query: 69 QTMRNSIMASTVLASVAITLSSLVAALMASGVAHGIFSPGAGDGQGEIVVGAGGETALSI 128
QT+RN IM ST++A+ +I L + +AA+++S A + V GA GE +++
Sbjct: 67 QTLRNCIMGSTLMATTSILLCAGLAAVLSSTYA-------VKKPLNDAVFGARGEFMVAL 119
Query: 129 KFFAILVCFLVAFLLNVQSIRYYSHTGILVNVPLHAXXXXXXXPGLAVDYVTATLNRGSY 188
K+ IL FL +F + SIR+ + IL+N P A +YV L RG
Sbjct: 120 KYVTILTIFLFSFFSHSLSIRFINQVNILINTPFPPEELEDEMMMTAEEYVAELLERGFI 179
Query: 189 FWSLGVRAFYFSCPVFLWLFGPIPMFASCLAMVCALYFLDVYTEWDEK 236
++G R FY + P+ LW+FGP+ +F + MV LY LD + E+
Sbjct: 180 LNTVGNRLFYAALPLMLWIFGPVLVFLCSVVMVPLLYNLDFFFFGKER 227
>AT5G10580.1 | chr5:3347511-3348657 FORWARD LENGTH=247
Length = 246
Score = 130 bits (327), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 123/222 (55%), Gaps = 10/222 (4%)
Query: 9 LDYVLVPMGMAVMVAYHAWLLLRIRRRPATTVIGINAINRRIWVRHVMEEASGKHAVLAV 68
LD VLVP + +M YH +L ++R P T++G N+ RR WV +M++ K+ +LAV
Sbjct: 8 LDAVLVPSALLMMFGYHIYLWYKVRTDPFCTIVGTNSRARRSWVAAIMKDNEKKN-ILAV 66
Query: 69 QTMRNSIMASTVLASVAITLSSLVAALMASGVAHGIFSPGAGDGQGEIVVGAGGETALSI 128
QT+RN+IM T++A+ I L + +AA+++S + I P + V GA G+ +++
Sbjct: 67 QTLRNTIMGGTLMATTCILLCAGLAAVLSS--TYSIKKP-----LNDAVYGAHGDFTVAL 119
Query: 129 KFFAILVCFLVAFLLNVQSIRYYSHTGILVNVPLHAXXXXXXXPGLAV--DYVTATLNRG 186
K+ IL FL AF + SIR+ + IL+N P G V +YV+ L +
Sbjct: 120 KYVTILTIFLFAFFSHSLSIRFINQVNILINAPQEPFSDDFGEIGSFVTPEYVSELLEKA 179
Query: 187 SYFWSLGVRAFYFSCPVFLWLFGPIPMFASCLAMVCALYFLD 228
++G R FY P+ LW+FGP+ +F S ++ LY LD
Sbjct: 180 FLLNTVGNRLFYMGLPLMLWIFGPVLVFLSSALIIPVLYNLD 221
>AT5G46060.1 | chr5:18681533-18682459 FORWARD LENGTH=249
Length = 248
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 126/224 (56%), Gaps = 18/224 (8%)
Query: 6 SKELDYVLVPMGMAVMVAYHAWLLLRIRRRPATTVIGINAINRRIWVRHVMEEASGKHAV 65
+ LD VLVP G+ ++++YH +LL RI P T+IG I++ IWV +M+ A
Sbjct: 7 KEYLDLVLVPFGLIIVLSYHLFLLYRILYFPYHTIIGFMNIDKSIWVDRIMQ-ARKDELG 65
Query: 66 LAVQTMRNSIMASTVLASVAITLSSLVAALMASG-VAHGIFSPGAGDGQGEIVVGAGGET 124
A+ + +SI AST +AS+A+TLSSL+ A + S V+ +F+ G + G
Sbjct: 66 GALTVLSSSISASTFMASIALTLSSLIGAWIGSSPVSMTVFT-------GHFIYGDTSSI 118
Query: 125 ALSIKFFAILVCFLVAFLLNVQSIRYYSHTGILVNVPLHAXXXXXXXPGLAVDYVTATLN 184
+ IK+ ++L+CFLVAF +QS R + H L+ P + D V +
Sbjct: 119 TMVIKYTSLLICFLVAFCCFIQSTRCFLHANYLITTP---------GEDIPPDMVKRFVL 169
Query: 185 RGSYFWSLGVRAFYFSCPVFLWLFGPIPMFASCLAMVCALYFLD 228
RG +WSLG+RA Y + + LWLFGP+PMF + + MV LYFLD
Sbjct: 170 RGGNYWSLGLRALYLALDLLLWLFGPVPMFINSVLMVICLYFLD 213
>AT5G24790.1 | chr5:8512076-8513064 FORWARD LENGTH=247
Length = 246
Score = 124 bits (310), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 132/228 (57%), Gaps = 9/228 (3%)
Query: 9 LDYVLVPMGMAVMVAYHAWLLLRIRRRPATTVIGINAINRRIWVRHVMEEASGKHAVLAV 68
LD +LVP+ + +M+ YH +L +R P +T++GIN+ RRIW+ ++++ + K +LAV
Sbjct: 8 LDAILVPLALMMMICYHIYLSFMVRTNPFSTLLGINSHGRRIWISAMIKD-NQKTNILAV 66
Query: 69 QTMRNSIMASTVLASVAITLSSLVAALMASGVAHGIFSPGAGDGQGEIVVGAGGETALSI 128
QT+RN +M +T++A+ + L + +AA+++S + I P + V GA G+ A+SI
Sbjct: 67 QTLRNIVMGATLMATTCVLLCAGLAAVLSS--TYSIKKP-----LNDAVFGAHGDFAISI 119
Query: 129 KFFAILVCFLVAFLLNVQSIRYYSHTGILVNVPLHAXXXXXXXPGLAVDYVTATLNRGSY 188
K+ IL F+ +F + SIR+ + ILVN+P + L ++V+ +G +
Sbjct: 120 KYLTILTIFIFSFFFHSLSIRFLNQVAILVNIP-NLDPNPSGCVFLTSEHVSEMFEKGIF 178
Query: 189 FWSLGVRAFYFSCPVFLWLFGPIPMFASCLAMVCALYFLDVYTEWDEK 236
++G R FY + LW+FGPI +F S L MV L LD + + K
Sbjct: 179 LNTVGNRLFYAGFSLMLWIFGPILVFFSVLVMVLVLSHLDFVSRNNNK 226
>AT5G43180.1 | chr5:17336425-17337816 REVERSE LENGTH=240
Length = 239
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 103/227 (45%), Gaps = 11/227 (4%)
Query: 8 ELDYVLVPMGMAVMVAYHAWLLLRIRRRPATTVIGINAINRRIWVRHVMEEASGKHAVLA 67
+ D ++VP+ + + V YH +L + P+ T +GI++ R+ W R + +E K +LA
Sbjct: 6 DTDSIVVPLSLLIAVGYHVFLWNTFKHNPSRTSLGIDSSKRKSWFRDI-KEGDDKTGMLA 64
Query: 68 VQTMRNSIMASTVLASVAITLSSLVAALMASGVAHGIFSPGAGDGQGEIVVGAGGETALS 127
VQ++RN M + + A++AI + +AA+ + A D I G+
Sbjct: 65 VQSLRNKKMVTILTATIAILIFLSLAAVTNNAFKASHLITAADD----IFFGSQNAKIFV 120
Query: 128 IKFFAILVCFLVAFLLNVQSIRYYSHTGILVNV--PLHAXXXXXXXPGLAV----DYVTA 181
+K+ + + +F + ++ Y L+N H +Y
Sbjct: 121 LKYASASLLLAASFFFSSIALSYLMDAIFLINAIAKKHEGDCDCAYDITGTSSFREYTRL 180
Query: 182 TLNRGSYFWSLGVRAFYFSCPVFLWLFGPIPMFASCLAMVCALYFLD 228
L RG + +G R S P+ LW+FGP+P+ AS L +V LY D
Sbjct: 181 VLERGFFMAMVGNRVMCVSIPLLLWMFGPLPVLASSLGLVWVLYQFD 227
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.138 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,012,336
Number of extensions: 175773
Number of successful extensions: 505
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 485
Number of HSP's successfully gapped: 7
Length of query: 276
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 179
Effective length of database: 8,447,217
Effective search space: 1512051843
Effective search space used: 1512051843
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 111 (47.4 bits)