BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0335600 Os08g0335600|AK106063
(204 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0335600 DOMON related domain containing protein 307 4e-84
AK105009 307 4e-84
Os03g0194600 DOMON related domain containing protein 95 4e-20
Os08g0524400 DOMON related domain containing protein 87 6e-18
Os03g0194900 DOMON related domain containing protein 85 4e-17
Os08g0524200 DOMON related domain containing protein 72 4e-13
Os03g0194300 DOMON related domain containing protein 70 7e-13
>Os08g0335600 DOMON related domain containing protein
Length = 204
Score = 307 bits (786), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 152/162 (93%), Positives = 152/162 (93%)
Query: 43 NQQYGSCATLPRLGATLHYNYXXXXXXXXXXFRAPQPAGGKGWVAWGINPSGSGMVGTQA 102
NQQYGSCATLPRLGATLHYNY FRAPQPAGGKGWVAWGINPSGSGMVGTQA
Sbjct: 43 NQQYGSCATLPRLGATLHYNYTAAASTVAVAFRAPQPAGGKGWVAWGINPSGSGMVGTQA 102
Query: 103 VVAFRHSNGSLVAYPTVLGSYAPSMAPAAAKDLALPVSGVSAEENGKAKEVVVYATVALP 162
VVAFRHSNGSLVAYPTVLGSYAPSMAPAAAKDLALPVSGVSAEENGKAKEVVVYATVALP
Sbjct: 103 VVAFRHSNGSLVAYPTVLGSYAPSMAPAAAKDLALPVSGVSAEENGKAKEVVVYATVALP 162
Query: 163 AGKGTKFNHVWQQGSSVAGDVPAAHPTSGDNVLSVGSIDFSK 204
AGKGTKFNHVWQQGSSVAGDVPAAHPTSGDNVLSVGSIDFSK
Sbjct: 163 AGKGTKFNHVWQQGSSVAGDVPAAHPTSGDNVLSVGSIDFSK 204
>AK105009
Length = 204
Score = 307 bits (786), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 152/162 (93%), Positives = 152/162 (93%)
Query: 43 NQQYGSCATLPRLGATLHYNYXXXXXXXXXXFRAPQPAGGKGWVAWGINPSGSGMVGTQA 102
NQQYGSCATLPRLGATLHYNY FRAPQPAGGKGWVAWGINPSGSGMVGTQA
Sbjct: 43 NQQYGSCATLPRLGATLHYNYTAAASTVAVAFRAPQPAGGKGWVAWGINPSGSGMVGTQA 102
Query: 103 VVAFRHSNGSLVAYPTVLGSYAPSMAPAAAKDLALPVSGVSAEENGKAKEVVVYATVALP 162
VVAFRHSNGSLVAYPTVLGSYAPSMAPAAAKDLALPVSGVSAEENGKAKEVVVYATVALP
Sbjct: 103 VVAFRHSNGSLVAYPTVLGSYAPSMAPAAAKDLALPVSGVSAEENGKAKEVVVYATVALP 162
Query: 163 AGKGTKFNHVWQQGSSVAGDVPAAHPTSGDNVLSVGSIDFSK 204
AGKGTKFNHVWQQGSSVAGDVPAAHPTSGDNVLSVGSIDFSK
Sbjct: 163 AGKGTKFNHVWQQGSSVAGDVPAAHPTSGDNVLSVGSIDFSK 204
>Os03g0194600 DOMON related domain containing protein
Length = 193
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 44 QQYGSCATLPRLGATLHYNYXXXXXXXXXXFRAPQPAGGKGWVAWGINPSGSGMVGTQAV 103
+ Y C TLP LGA+LH+ Y FRAPQ + G GWVAWGIN G+GMVG+
Sbjct: 35 RTYRRCDTLPVLGASLHWTYHPANGTADVAFRAPQSSSG-GWVAWGINTQGAGMVGSSVF 93
Query: 104 VAFRHS-----NGSLVAYPTVLGSYAPSMAPAAAKDLALPVSGVSAEENGKAKEVVVYAT 158
+A + + G + TVL S++PS+ L V A E A +YAT
Sbjct: 94 IASQINATGAGAGGVSVVTTVLESFSPSLRNGT---LRFDVPAPPAAEY-SAGAYTIYAT 149
Query: 159 VALPAGKGTKFNHVWQQGSSVAGDVPAAHPTSGDNVLSVGSIDFS 203
VALP G T N VWQ G V G A HPT+G N+ S DF+
Sbjct: 150 VALP-GNSTTQNMVWQAG-PVRGGAIAMHPTTGANLRSTKKHDFT 192
>Os08g0524400 DOMON related domain containing protein
Length = 263
Score = 87.4 bits (215), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 77/154 (50%), Gaps = 23/154 (14%)
Query: 44 QQYGSCATLPRLGATLHYNYXXXXXXXXXXFRAPQPAGGKGWVAWGINPSGSGMVGTQAV 103
+ Y +C LP LGA LHY Y F A PAG GWVAWG+NP+G GM GTQA+
Sbjct: 38 RAYAACEDLPSLGAALHYTYDASKSSLSVAFVA-APAGAGGWVAWGLNPTGEGMAGTQAL 96
Query: 104 VAFRHSNGS---------LVAYPTVLGSYAPSMAPAAAKDLALPVSGVSAEENGKAKEVV 154
VA + + S + Y + G+ P +A P + ++A+E G ++
Sbjct: 97 VALKGGSSSSAPAVKTYNITGYVALGGASTP---------IAFPATDLAADE-GSGGKIR 146
Query: 155 VYATVALPAGKGTK-FNHVWQQGSSVAGDVPAAH 187
+Y + L KG K N VWQ GSSV G P H
Sbjct: 147 LYGKLQL--HKGMKSVNQVWQVGSSVTGGAPDKH 178
>Os03g0194900 DOMON related domain containing protein
Length = 384
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 85/161 (52%), Gaps = 10/161 (6%)
Query: 44 QQYGSCATLPRLGATLHYNYXXXXXXXXXXFRAPQPAGGKGWVAWGINPSGSGMVGTQAV 103
Q + C LP LGA+LH+ + FRAPQ + GWVAWGIN G+ M G+
Sbjct: 33 QTFLKCNPLPVLGASLHWTHHAENGTADVAFRAPQQS--SGWVAWGINTRGTTMPGSSVF 90
Query: 104 VAFRHSNGSLVAYPTVLGSYAPSMAPAAAK-DLALPVSGVSAEENGKAKEVVVYATVALP 162
+A + +GS+ TVL + +PS+ + D+ P + + NG ++AT+ALP
Sbjct: 91 IASQDGSGSVSVLMTVLENTSPSLTNGSLSFDVLSPPT--ADYTNG---VYTIFATIALP 145
Query: 163 AGKGTKFNHVWQQGSSVAGDVPAAHPTSGDNVLSVGSIDFS 203
T+ N VWQ G G+V H TSG NV S+ +DFS
Sbjct: 146 NNSTTQ-NTVWQAGPGSTGNV-GQHATSGPNVQSMLRLDFS 184
>Os08g0524200 DOMON related domain containing protein
Length = 390
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 77/161 (47%), Gaps = 8/161 (4%)
Query: 43 NQQYGSCATLPRLGATLHYNYXXXXXXXXXXFRAPQPAGGKGWVAWGINPSGSGMVGTQA 102
N+ Y +C+ LP LGA++H+ Y P GWVAWG+NP+G GM GTQA
Sbjct: 34 NRVYAACSDLPHLGASVHWTYDAAASASLSVAFVAAPPSPGGWVAWGLNPTGGGMAGTQA 93
Query: 103 VVAFRHSNGSLVAYPTV-LGSYAPSMAPAAAKDLALPVSGVSAEENGKAKEVVVYATVAL 161
+VA G T + Y+ S A L P + ++AE + V V+ +AL
Sbjct: 94 LVALPKGGGGGYEVQTFDIEGYSLS----APGKLKYPATDLAAEVAADGR-VSVFGKLAL 148
Query: 162 PAGKGTKFNHVWQQGSSVAGDVPAAHPTSGDNVLSVGSIDF 202
G + N VWQ G +G + H S DN ++G ++
Sbjct: 149 QNGT-AEVNQVWQVGPVSSGSM-VPHAMSSDNKAAMGKLNL 187
>Os03g0194300 DOMON related domain containing protein
Length = 417
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 72/166 (43%), Gaps = 8/166 (4%)
Query: 44 QQYGSCATLPRLGATLHYNYXXXXXXXXXXFRAPQPAGGKGWVAWGINPSGSGMVGTQAV 103
+ Y C LP GATL + Y F GWVAWG+N M G + +
Sbjct: 48 KTYAKCIALPTQGATLAWTYDARNATLDAAFTG-SFISPSGWVAWGVNKDAPAMTGARVL 106
Query: 104 VAFRH-SNGSLVAYPTVLGSYAPSMA-PAAAKDLALPVSGVSAEENGKAKEVVVYATVAL 161
AF S G+L+A P +L A P ++ L +P+ SA A+ V ATV +
Sbjct: 107 AAFSDPSTGALLALPFLLSPDVKLQASPLVSRPLDIPLLASSASLVDPARTVRDGATVTI 166
Query: 162 PAG-----KGTKFNHVWQQGSSVAGDVPAAHPTSGDNVLSVGSIDF 202
A TK + VW +G V G P HPT ++ S ++D
Sbjct: 167 AATIRLSPNRTKLHFVWNRGLYVQGYSPTIHPTDASDLASHATVDI 212
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.129 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,270,680
Number of extensions: 283620
Number of successful extensions: 595
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 585
Number of HSP's successfully gapped: 7
Length of query: 204
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 108
Effective length of database: 12,023,257
Effective search space: 1298511756
Effective search space used: 1298511756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 153 (63.5 bits)