BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0138500 Os08g0138500|AK102951
(253 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0138500 Similar to Helix-loop-helix-like protein (Frag... 491 e-139
Os07g0543000 Similar to Helix-loop-helix-like protein (Frag... 247 4e-66
Os02g0116600 Basic helix-loop-helix dimerisation region bHL... 157 9e-39
Os02g0433600 Basic helix-loop-helix dimerisation region bHL... 91 1e-18
Os03g0379300 Basic helix-loop-helix dimerisation region bHL... 71 6e-13
Os07g0628500 Basic helix-loop-helix dimerisation region bHL... 70 2e-12
>Os08g0138500 Similar to Helix-loop-helix-like protein (Fragment)
Length = 253
Score = 491 bits (1263), Expect = e-139, Method: Compositional matrix adjust.
Identities = 240/253 (94%), Positives = 240/253 (94%)
Query: 1 MSGTPADXXXXXXXXXXXXXDDWFLDCGILEDLPAAACGAFPWDASPSCSNPSVEVSSYV 60
MSGTPAD DDWFLDCGILEDLPAAACGAFPWDASPSCSNPSVEVSSYV
Sbjct: 1 MSGTPADGGGGGGGGGGGSGDDWFLDCGILEDLPAAACGAFPWDASPSCSNPSVEVSSYV 60
Query: 61 NTTSYVLKEPGSNKRVRSGSCGRPTSKASREKIRRDKMNDRFLELGTTLEPGKPVKSDKA 120
NTTSYVLKEPGSNKRVRSGSCGRPTSKASREKIRRDKMNDRFLELGTTLEPGKPVKSDKA
Sbjct: 61 NTTSYVLKEPGSNKRVRSGSCGRPTSKASREKIRRDKMNDRFLELGTTLEPGKPVKSDKA 120
Query: 121 AILSDATRMVIQLRAEAKQLKDTNESLEDKIKELKAEKDELRDEKQKLKVEKETLEQQVK 180
AILSDATRMVIQLRAEAKQLKDTNESLEDKIKELKAEKDELRDEKQKLKVEKETLEQQVK
Sbjct: 121 AILSDATRMVIQLRAEAKQLKDTNESLEDKIKELKAEKDELRDEKQKLKVEKETLEQQVK 180
Query: 181 ILTATPAYMPHPTLMPAPYPQAPLAPFHHAQGQAAGQKLMMPFVGYPGYPMWQFMPPSEV 240
ILTATPAYMPHPTLMPAPYPQAPLAPFHHAQGQAAGQKLMMPFVGYPGYPMWQFMPPSEV
Sbjct: 181 ILTATPAYMPHPTLMPAPYPQAPLAPFHHAQGQAAGQKLMMPFVGYPGYPMWQFMPPSEV 240
Query: 241 DTSKDSEACPPVA 253
DTSKDSEACPPVA
Sbjct: 241 DTSKDSEACPPVA 253
>Os07g0543000 Similar to Helix-loop-helix-like protein (Fragment)
Length = 256
Score = 247 bits (631), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 120/186 (64%), Positives = 154/186 (82%), Gaps = 7/186 (3%)
Query: 68 KEPGSNKRVRSGSCGRPTSKASREKIRRDKMNDRFLELGTTLEPGKPVKSDKAAILSDAT 127
KE +NKR RS S RP+SKA REK+RRDK+N+RFLELG LEPGK K DK++IL+DA
Sbjct: 78 KEQPTNKRPRSESGTRPSSKACREKVRRDKLNERFLELGAVLEPGKTPKMDKSSILNDAI 137
Query: 128 RMVIQLRAEAKQLKDTNESLEDKIKELKAEKDELRDEKQKLKVEKETLEQQVKILTATPA 187
R++ +LR+EA++LK++NESL++KIKELKAEK+ELRDEKQKLK EKE+LEQQ+K L A P+
Sbjct: 138 RVMAELRSEAQKLKESNESLQEKIKELKAEKNELRDEKQKLKAEKESLEQQIKFLNARPS 197
Query: 188 YMPHPTLMPAPYPQAPLAPFHHAQGQAAGQKLMMPFVGYPGYPMWQFMPPSEVDTSKDSE 247
++PHP ++PA + F QGQAAGQKLMMP +GYPG+PMWQFMPPS+VDT+ D++
Sbjct: 198 FVPHPPVIPA-------SAFTAPQGQAAGQKLMMPVIGYPGFPMWQFMPPSDVDTTDDTK 250
Query: 248 ACPPVA 253
+CPPVA
Sbjct: 251 SCPPVA 256
>Os02g0116600 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 236
Score = 157 bits (396), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 94/191 (49%), Positives = 119/191 (62%), Gaps = 18/191 (9%)
Query: 71 GSNKRVRSGSCGRPTSKASREKIRRDKMNDRFLELGTTLEPGKPVKSDKAAILSDATRMV 130
G R S S G P SKA REKIRRD++NDRFLEL + + P K K DKA ILSDA R++
Sbjct: 56 GKRGRDESSSSG-PKSKACREKIRRDRLNDRFLELSSVINPDKQAKLDKANILSDAARLL 114
Query: 131 IQLRAEAKQLKDTNESLEDKIKELKAEKDELRDEKQKLKVEKETLEQQVKILTATP-AYM 189
+LR EA++LK++NE L + IK+LK EK+ELRDEK LK EKE LEQQVK L+ P ++
Sbjct: 115 AELRGEAEKLKESNEKLRETIKDLKVEKNELRDEKVTLKAEKERLEQQVKALSVAPTGFV 174
Query: 190 PHPTLMPAPYPQAPLAPFHHAQG-------QAAGQKLMMPFVGYPGYPMWQFMPPSEVDT 242
PH P+P A FH A QA G K + G MWQ++PP+ VDT
Sbjct: 175 PH-----LPHPAA----FHPAAFPPFIPPYQALGNKNAPTPAAFQGMAMWQWLPPTAVDT 225
Query: 243 SKDSEACPPVA 253
++D + PP A
Sbjct: 226 TQDPKLWPPNA 236
>Os02g0433600 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 343
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 73/104 (70%), Gaps = 5/104 (4%)
Query: 83 RPTSKASREKIRRDKMNDRFLELGTTLEPGKPVKSDKAAILSDATRMVIQLRAEAKQLKD 142
R KA REK+RRD++N++F ELG+TL+P +P ++DKA ILSDA +M+ L ++ +LK
Sbjct: 40 RKVQKADREKMRRDRLNEQFQELGSTLDPDRP-RNDKATILSDAIQMLKDLTSQVNKLKA 98
Query: 143 TNESLEDKIKELKAEKDELRDEKQKLKVEKETL----EQQVKIL 182
SL ++ +EL EK+ELRDEK LK E + L +Q++++L
Sbjct: 99 EYTSLSEEARELTQEKNELRDEKVSLKFEVDNLNTQYQQRMRVL 142
>Os03g0379300 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 252
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 80/147 (54%), Gaps = 3/147 (2%)
Query: 66 VLKEPGSNKRVRSGSCGRPTSKASREKIRRDKMNDRFLELGTTLEPGKPVKSDKAAILSD 125
++ P S+K+ R R K+ REK++R +ND F ELG LE + + KA IL+D
Sbjct: 21 LVHGPISDKKCRK-KVPRKVHKSEREKLKRGHLNDLFGELGNMLEADR-QSNGKACILTD 78
Query: 126 ATRMVIQLRAEAKQLKDTNESLEDKIKELKAEKDELRDEKQKLKVEKETLEQQVKI-LTA 184
TR++ L ++ K L+ N +L+++ + E++EL+DE L+ E L+ ++++ T
Sbjct: 79 TTRILRDLLSQVKSLRQENSTLQNESNYVTMERNELQDENGALRSEISDLQNELRMRATG 138
Query: 185 TPAYMPHPTLMPAPYPQAPLAPFHHAQ 211
+P + T P P P +P F Q
Sbjct: 139 SPGWGHGATGSPLPVPPSPGTVFPSQQ 165
>Os07g0628500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 265
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Query: 87 KASREKIRRDKMNDRFLELGTTLEPGKPVKSDKAAILSDATRMVIQLRAEAKQLKDTNES 146
K+ REK++RDK ND F ELG LEP + + KA +L + TR++ L ++ + L+ N S
Sbjct: 40 KSEREKLKRDKQNDLFNELGNLLEPDRQ-NNGKACVLGETTRILKDLLSQVESLRKENSS 98
Query: 147 LEDKIKELKAEKDELRDEKQKLKVEKETLEQQVKILTATPAYMPHPTLMPA---PYPQAP 203
L+++ + E++EL D+ L+ E L+ +++ H PA PYP
Sbjct: 99 LKNESHYVALERNELHDDNSMLRTEILELQNELRTRMEGNPVWSHVNTRPALRVPYPTTG 158
Query: 204 LAPFHH 209
+ P H
Sbjct: 159 VFPVQH 164
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.129 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,010,588
Number of extensions: 391785
Number of successful extensions: 2970
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 2952
Number of HSP's successfully gapped: 6
Length of query: 253
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 154
Effective length of database: 11,866,615
Effective search space: 1827458710
Effective search space used: 1827458710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 155 (64.3 bits)