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Os07g0543000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Helix-loop-helix-like protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.0128) R2 : 0.034
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.108 (0.027) R2dN8 : 0.0439 R2N8 : 0.034
σ : 0.242
deviance : 26.77
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
14.34 0.178 11.7 0.412 0.325 -0.418 0.0829 0.98 -0.0415 9.95 25.7 281 -- --
14.61 0.178 11.7 0.318 0.318 -0.309 0.119 -- -0.0544 9.63 25.02 341 -- --
14.36 0.176 11.7 0.416 0.323 -0.423 -- 0.976 -0.0412 10 25.7 283 -- --
14.61 0.178 11.7 0.305 0.312 -0.327 -- -- -0.0606 9.85 25.2 326 -- --
18.28 0.199 11.7 0.486 -- -0.551 -- 0.941 -0.00397 -- 24.79 608 -- --
16.28 0.189 11.7 0.244 0.395 -- 0.218 -- -0.0841 8.41 -- -- -- --
16.43 0.19 11.7 0.251 0.394 -- -- -- -0.084 8.46 -- -- -- --
18.51 0.2 11.7 0.347 -- -0.48 -- -- -0.0333 -- 24.31 599 -- --
16.94 0.192 11.7 -- 0.331 -0.254 -- -- -0.104 9.38 25.7 302 -- --
25.09 0.234 11.7 0.252 -- -- -- -- -0.0801 -- -- -- -- --
18.09 0.199 11.7 -- 0.395 -- -- -- -0.112 8.42 -- -- -- --
21.53 0.216 11.7 -- -- -0.421 -- -- -0.0836 -- 24.8 579 -- --
26.77 0.242 11.7 -- -- -- -- -- -0.108 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 13.97 temperature 20 720 > th dose dependent rect. 8 1
2 14.01 temperature 20 720 > th dose dependent rect. 3 7
4 14.03 temperature 20 720 > th dose dependent rect. 1 9
7 14.06 temperature 20 720 > th dose dependent rect. 1 12
8 14.07 temperature 20 720 > th dose dependent rect. 3 10
19 14.13 temperature 25 720 > th dose dependent rect. 7 6
30 14.16 temperature 20 720 > th dose dependent sin 5 NA
39 14.20 temperature 30 90 < th dose independent rect. 19 22
44 14.22 temperature 25 270 > th dose dependent rect. 6 14
89 14.26 wind 9 43200 > th dose dependent rect. 18 14
108 14.28 temperature 25 270 > th dose dependent rect. 14 23
121 14.30 wind 7 43200 > th dose independent rect. 6 1
139 14.33 atmosphere 995 43200 < th dose dependent rect. 9 8
161 14.34 atmosphere 995 43200 < th dose dependent rect. 13 2
176 14.35 atmosphere 995 43200 < th dose dependent rect. 11 5
185 14.36 temperature 10 720 > th dose dependent rect. 6 7
198 14.37 wind 7 43200 < th dose independent rect. 6 1
211 14.38 wind 9 43200 > th dose independent rect. 18 15
214 14.38 temperature 20 1440 > th dose dependent rect. 20 1
226 14.39 radiation 10 4320 < th dose independent rect. 16 1
239 14.39 humidity 80 43200 > th dose dependent rect. 2 13
243 14.39 humidity 80 43200 > th dose dependent rect. 1 16
254 14.40 atmosphere 995 43200 > th dose independent rect. 11 3
256 14.40 temperature 25 270 > th dose dependent no NA NA
257 14.40 humidity 80 43200 > th dose dependent sin 4 NA
275 14.41 temperature 25 720 > th dose independent rect. 6 5
276 14.41 temperature 25 720 < th dose independent rect. 5 6
291 14.41 temperature 25 270 > th dose dependent rect. 12 23
304 14.42 temperature 20 1440 > th dose dependent rect. 18 13
319 14.42 temperature 25 270 > th dose dependent rect. 17 23
320 14.43 temperature 20 720 < th dose independent rect. 4 2
322 14.43 temperature 30 10 < th dose independent rect. 11 16
324 14.43 temperature 25 270 > th dose dependent sin 0 NA
325 14.43 temperature 20 1440 > th dose dependent rect. 3 2
332 14.43 temperature 20 1440 > th dose dependent rect. 18 11
353 14.43 humidity 80 43200 > th dose dependent rect. 4 23
354 14.43 humidity 80 43200 > th dose dependent rect. 16 23
362 14.44 atmosphere 995 43200 < th dose independent rect. 7 8
365 14.44 humidity 80 43200 > th dose dependent no NA NA
387 14.44 humidity 80 43200 > th dose dependent rect. 16 21
393 14.44 humidity 80 43200 > th dose dependent rect. 9 23
396 14.44 humidity 80 43200 > th dose dependent rect. 19 23
399 14.45 humidity 90 43200 < th dose independent rect. 12 19
408 14.45 temperature 30 720 < th dose dependent rect. 4 7
428 14.45 humidity 80 43200 > th dose dependent rect. 7 23
434 14.46 temperature 20 1440 > th dose independent rect. 3 2
439 14.46 wind 9 43200 < th dose independent rect. 18 15
486 14.47 humidity 90 43200 < th dose independent rect. 16 16
495 14.47 temperature 20 1440 > th dose dependent sin 12 NA
500 14.47 radiation 20 10 > th dose dependent rect. 11 1
510 14.47 temperature 30 720 < th dose dependent rect. 4 9
533 14.48 temperature 25 720 > th dose independent rect. 6 7
547 14.48 temperature 30 720 < th dose dependent rect. 5 2
573 14.49 humidity 90 43200 < th dose independent rect. 21 1
574 14.49 radiation 40 10 > th dose independent rect. 11 1
575 14.49 humidity 90 43200 < th dose independent rect. 14 13
578 14.49 humidity 90 43200 < th dose independent rect. 24 15
579 14.49 humidity 90 43200 < th dose independent rect. 12 16
584 14.49 humidity 90 43200 < th dose independent rect. 21 18
595 14.49 atmosphere 995 43200 < th dose dependent sin 22 NA
599 14.49 temperature 30 720 < th dose dependent rect. 5 4
624 14.49 temperature 10 720 > th dose dependent rect. 1 14
627 14.49 wind 9 43200 > th dose dependent rect. 17 16
645 14.50 humidity 90 43200 < th dose independent sin 14 NA
655 14.50 temperature 30 10 < th dose independent rect. 11 6
656 14.50 humidity 90 43200 > th dose independent rect. 14 13
673 14.50 humidity 90 43200 > th dose independent rect. 12 19
713 14.50 humidity 80 43200 > th dose dependent rect. 10 17
727 14.51 humidity 90 43200 < th dose independent sin 7 NA
740 14.51 humidity 90 43200 < th dose independent rect. 17 10
745 14.51 humidity 90 43200 < th dose independent rect. 21 14
757 14.51 temperature 30 90 < th dose independent rect. 23 17
758 14.51 humidity 90 43200 > th dose independent rect. 14 17
775 14.51 temperature 10 720 > th dose dependent sin 3 NA
795 14.51 temperature 10 720 > th dose dependent rect. 1 17
808 14.52 humidity 90 43200 > th dose independent sin 14 NA
953 14.53 humidity 80 43200 > th dose dependent sin 17 NA
956 14.53 radiation 10 43200 < th dose dependent rect. 1 1
960 14.53 temperature 10 720 > th dose dependent rect. 1 9
965 14.53 temperature 30 720 < th dose dependent rect. 2 14
969 14.53 humidity 80 43200 > th dose dependent rect. 11 15
982 14.54 humidity 90 43200 < th dose independent no NA NA
983 14.54 humidity 90 43200 > th dose independent rect. 22 2
989 14.54 temperature 20 1440 < th dose independent rect. 21 8