BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0543000 Os07g0543000|AK058889
(256 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0543000 Similar to Helix-loop-helix-like protein (Frag... 418 e-117
Os08g0138500 Similar to Helix-loop-helix-like protein (Frag... 247 6e-66
Os02g0116600 Basic helix-loop-helix dimerisation region bHL... 174 7e-44
Os02g0433600 Basic helix-loop-helix dimerisation region bHL... 97 1e-20
Os07g0628500 Basic helix-loop-helix dimerisation region bHL... 66 3e-11
>Os07g0543000 Similar to Helix-loop-helix-like protein (Fragment)
Length = 256
Score = 418 bits (1074), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/256 (82%), Positives = 211/256 (82%)
Query: 1 MASPEGSTWVFDCPLMXXXXXXXXXXXXXXXXFYWTTXXXXXXXXXXXXXXXXXXXXXXX 60
MASPEGSTWVFDCPLM FYWTT
Sbjct: 1 MASPEGSTWVFDCPLMDDLAAAAGFDAAPAGGFYWTTPAPPQAALQPPPPQQQPVAPATA 60
Query: 61 XXXXXXEINGSVDCEHGKEQPTNKRPRSESGTRPSSKACREKVRRDKLNERFLELGAVLE 120
EINGSVDCEHGKEQPTNKRPRSESGTRPSSKACREKVRRDKLNERFLELGAVLE
Sbjct: 61 APNACAEINGSVDCEHGKEQPTNKRPRSESGTRPSSKACREKVRRDKLNERFLELGAVLE 120
Query: 121 PGKTPKMDKSSILNDAIRVMAELRSEAQKLKESNESLQEKIKELKAEKNELRDEKQKLKA 180
PGKTPKMDKSSILNDAIRVMAELRSEAQKLKESNESLQEKIKELKAEKNELRDEKQKLKA
Sbjct: 121 PGKTPKMDKSSILNDAIRVMAELRSEAQKLKESNESLQEKIKELKAEKNELRDEKQKLKA 180
Query: 181 EKESLEQQIKFLNARPSFVPHPPVIPASAFTAPQGQAAGQKLMMPVIGYPGFPMWQFMPP 240
EKESLEQQIKFLNARPSFVPHPPVIPASAFTAPQGQAAGQKLMMPVIGYPGFPMWQFMPP
Sbjct: 181 EKESLEQQIKFLNARPSFVPHPPVIPASAFTAPQGQAAGQKLMMPVIGYPGFPMWQFMPP 240
Query: 241 SDVDTTDDTKSCPPVA 256
SDVDTTDDTKSCPPVA
Sbjct: 241 SDVDTTDDTKSCPPVA 256
>Os08g0138500 Similar to Helix-loop-helix-like protein (Fragment)
Length = 253
Score = 247 bits (630), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 120/186 (64%), Positives = 154/186 (82%), Gaps = 7/186 (3%)
Query: 78 KEQPTNKRPRSESGTRPSSKACREKVRRDKLNERFLELGAVLEPGKTPKMDKSSILNDAI 137
KE +NKR RS S RP+SKA REK+RRDK+N+RFLELG LEPGK K DK++IL+DA
Sbjct: 68 KEPGSNKRVRSGSCGRPTSKASREKIRRDKMNDRFLELGTTLEPGKPVKSDKAAILSDAT 127
Query: 138 RVMAELRSEAQKLKESNESLQEKIKELKAEKNELRDEKQKLKAEKESLEQQIKFLNARPS 197
R++ +LR+EA++LK++NESL++KIKELKAEK+ELRDEKQKLK EKE+LEQQ+K L A P+
Sbjct: 128 RMVIQLRAEAKQLKDTNESLEDKIKELKAEKDELRDEKQKLKVEKETLEQQVKILTATPA 187
Query: 198 FVPHPPVIPA-------SAFTAPQGQAAGQKLMMPVIGYPGFPMWQFMPPSDVDTTDDTK 250
++PHP ++PA + F QGQAAGQKLMMP +GYPG+PMWQFMPPS+VDT+ D++
Sbjct: 188 YMPHPTLMPAPYPQAPLAPFHHAQGQAAGQKLMMPFVGYPGYPMWQFMPPSEVDTSKDSE 247
Query: 251 SCPPVA 256
+CPPVA
Sbjct: 248 ACPPVA 253
>Os02g0116600 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 236
Score = 174 bits (440), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 102/182 (56%), Positives = 125/182 (68%), Gaps = 9/182 (4%)
Query: 83 NKRPRSESGTR-PSSKACREKVRRDKLNERFLELGAVLEPGKTPKMDKSSILNDAIRVMA 141
KR R ES + P SKACREK+RRD+LN+RFLEL +V+ P K K+DK++IL+DA R++A
Sbjct: 56 GKRGRDESSSSGPKSKACREKIRRDRLNDRFLELSSVINPDKQAKLDKANILSDAARLLA 115
Query: 142 ELRSEAQKLKESNESLQEKIKELKAEKNELRDEKQKLKAEKESLEQQIKFLNARPS-FVP 200
ELR EA+KLKESNE L+E IK+LK EKNELRDEK LKAEKE LEQQ+K L+ P+ FVP
Sbjct: 116 ELRGEAEKLKESNEKLRETIKDLKVEKNELRDEKVTLKAEKERLEQQVKALSVAPTGFVP 175
Query: 201 HPPVIPASAFTAPQG------QAAGQKLMMPVIGYPGFPMWQFMPPSDVDTTDDTKSCPP 254
H P PA+ A QA G K + G MWQ++PP+ VDTT D K PP
Sbjct: 176 HLP-HPAAFHPAAFPPFIPPYQALGNKNAPTPAAFQGMAMWQWLPPTAVDTTQDPKLWPP 234
Query: 255 VA 256
A
Sbjct: 235 NA 236
>Os02g0433600 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 343
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/122 (46%), Positives = 81/122 (66%), Gaps = 9/122 (7%)
Query: 91 GTRPSSKACREKVRRDKLNERFLELGAVLEPGKTPKMDKSSILNDAIRVMAELRSEAQKL 150
TR KA REK+RRD+LNE+F ELG+ L+P + P+ DK++IL+DAI+++ +L S+ KL
Sbjct: 38 ATRKVQKADREKMRRDRLNEQFQELGSTLDPDR-PRNDKATILSDAIQMLKDLTSQVNKL 96
Query: 151 KESNESLQEKIKELKAEKNELRDEKQKLKAEKESL----EQQIKFL----NARPSFVPHP 202
K SL E+ +EL EKNELRDEK LK E ++L +Q+++ L PS V P
Sbjct: 97 KAEYTSLSEEARELTQEKNELRDEKVSLKFEVDNLNTQYQQRMRVLYPWTGMEPSVVIGP 156
Query: 203 PV 204
P+
Sbjct: 157 PL 158
>Os07g0628500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 265
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 25/138 (18%)
Query: 97 KACREKVRRDKLNERFLELGAVLEPGKTPKMDKSSILNDAIRVMAELRSEAQKLKESNES 156
K+ REK++RDK N+ F ELG +LEP + K+ +L + R++ +L S+ + L++ N S
Sbjct: 40 KSEREKLKRDKQNDLFNELGNLLEPDRQ-NNGKACVLGETTRILKDLLSQVESLRKENSS 98
Query: 157 LQEKIKELKAEKNELRDEKQKLKAEKESLEQQIK----------FLNARPSF-------- 198
L+ + + E+NEL D+ L+ E L+ +++ +N RP+
Sbjct: 99 LKNESHYVALERNELHDDNSMLRTEILELQNELRTRMEGNPVWSHVNTRPALRVPYPTTG 158
Query: 199 ------VPHPPVIPASAF 210
+PH PV +AF
Sbjct: 159 VFPVQHLPHLPVTTTAAF 176
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.129 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,841,202
Number of extensions: 294274
Number of successful extensions: 2740
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 2733
Number of HSP's successfully gapped: 7
Length of query: 256
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 157
Effective length of database: 11,866,615
Effective search space: 1863058555
Effective search space used: 1863058555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 155 (64.3 bits)