Os07g0628500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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Os07g0628500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 210.13 | 0.681 | 9.02 | -0.682 | 0.532 | 1.12 | 3.12 | -1.55 | -0.163 | 14.3 | 3.78 | 82 | -- | -- |
| 213.75 | 0.681 | 9.02 | -0.682 | 0.36 | 1.25 | 1.82 | -- | -0.174 | 15.6 | 3.797 | 84 | -- | -- |
| 221.91 | 0.694 | 9.02 | -0.632 | 0.517 | 1.14 | -- | 0.449 | -0.163 | 14.7 | 2.91 | 78 | -- | -- |
| 223.07 | 0.696 | 9.02 | -0.622 | 0.506 | 1.15 | -- | -- | -0.157 | 14.6 | 3.18 | 79 | -- | -- |
| 223.51 | 0.696 | 8.99 | -0.614 | -- | 1.47 | -- | 0.666 | -0.0806 | -- | 4.97 | 114 | -- | -- |
| 241.34 | 0.728 | 8.98 | -0.667 | 1.77 | -- | 1.25 | -- | -0.0813 | 13.1 | -- | -- | -- | -- |
| 247.71 | 0.737 | 8.98 | -0.624 | 1.77 | -- | -- | -- | -0.0753 | 13.1 | -- | -- | -- | -- |
| 223.9 | 0.697 | 9.01 | -0.623 | -- | 1.51 | -- | -- | -0.114 | -- | 5.071 | 125 | -- | -- |
| 233.01 | 0.711 | 9.01 | -- | 0.465 | 1.17 | -- | -- | -0.0976 | 14.4 | 3.78 | 81 | -- | -- |
| 441.76 | 0.982 | 9.01 | -0.691 | -- | -- | -- | -- | -0.11 | -- | -- | -- | -- | -- |
| 257.96 | 0.751 | 8.96 | -- | 1.78 | -- | -- | -- | -0.00583 | 13.1 | -- | -- | -- | -- |
| 234.16 | 0.713 | 8.99 | -- | -- | 1.52 | -- | -- | -0.0384 | -- | 5.235 | 127 | -- | -- |
| 454.34 | 0.995 | 8.99 | -- | -- | -- | -- | -- | -0.0333 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 193.65 | humidity | 80 | 14400 | > th | dose independent | rect. | 21 | 12 |
| 4 | 194.63 | humidity | 80 | 14400 | < th | dose independent | rect. | 21 | 13 |
| 16 | 196.68 | humidity | 80 | 14400 | < th | dose independent | rect. | 20 | 8 |
| 18 | 196.82 | humidity | 80 | 14400 | > th | dose independent | rect. | 20 | 10 |
| 45 | 199.08 | humidity | 80 | 14400 | < th | dose dependent | rect. | 19 | 12 |
| 53 | 199.60 | humidity | 80 | 14400 | > th | dose independent | rect. | 23 | 2 |
| 54 | 199.64 | humidity | 90 | 14400 | < th | dose dependent | rect. | 2 | 6 |
| 56 | 199.72 | humidity | 80 | 14400 | < th | dose independent | sin | 9 | NA |
| 60 | 199.89 | humidity | 90 | 14400 | < th | dose dependent | rect. | 23 | 10 |
| 62 | 200.07 | wind | 3 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 63 | 200.10 | humidity | 80 | 14400 | < th | dose dependent | rect. | 20 | 6 |
| 64 | 200.11 | radiation | 1 | 30 | < th | dose dependent | sin | 22 | NA |
| 79 | 200.68 | humidity | 80 | 14400 | > th | dose independent | sin | 9 | NA |
| 96 | 201.52 | wind | 3 | 14400 | > th | dose dependent | rect. | 15 | 3 |
| 98 | 201.59 | wind | 3 | 14400 | > th | dose dependent | rect. | 12 | 7 |
| 108 | 201.91 | humidity | 80 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 111 | 201.97 | radiation | 1 | 30 | < th | dose independent | sin | 22 | NA |
| 114 | 202.03 | radiation | 1 | 30 | > th | dose independent | sin | 22 | NA |
| 131 | 202.60 | wind | 9 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 141 | 202.81 | radiation | 1 | 90 | < th | dose independent | rect. | 11 | 8 |
| 145 | 202.87 | wind | 5 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 154 | 203.08 | radiation | 1 | 90 | < th | dose independent | rect. | 9 | 10 |
| 170 | 203.30 | radiation | 1 | 90 | < th | dose dependent | rect. | 11 | 8 |
| 172 | 203.33 | radiation | 1 | 90 | < th | dose dependent | rect. | 7 | 12 |
| 183 | 203.57 | radiation | 1 | 90 | < th | dose dependent | rect. | 9 | 10 |
| 194 | 203.76 | wind | 9 | 14400 | < th | dose dependent | rect. | 11 | 8 |
| 210 | 204.13 | wind | 5 | 14400 | > th | dose independent | rect. | 15 | 4 |
| 258 | 204.77 | wind | 3 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 293 | 205.20 | wind | 7 | 14400 | > th | dose dependent | rect. | 13 | 2 |
| 299 | 205.27 | wind | 3 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 311 | 205.41 | wind | 9 | 14400 | < th | dose dependent | rect. | 15 | 3 |
| 322 | 205.47 | wind | 9 | 14400 | < th | dose dependent | rect. | 12 | 4 |
| 328 | 205.52 | humidity | 80 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 442 | 206.56 | humidity | 80 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 482 | 206.84 | humidity | 80 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 542 | 207.23 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 6 | 11 |
| 656 | 208.00 | wind | 1 | 14400 | > th | dose dependent | sin | 20 | NA |
| 664 | 208.07 | wind | 9 | 14400 | < th | dose dependent | sin | 20 | NA |
| 691 | 208.23 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 21 | 20 |
| 697 | 208.29 | wind | 1 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 707 | 208.33 | wind | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 740 | 208.52 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 21 | 20 |
| 792 | 208.82 | radiation | 10 | 90 | < th | dose dependent | rect. | 13 | 21 |
| 801 | 208.86 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 857 | 209.09 | wind | 1 | 43200 | < th | dose dependent | rect. | 13 | 12 |
| 867 | 209.14 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 931 | 209.46 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 981 | 209.71 | wind | 1 | 43200 | < th | dose independent | rect. | 23 | 2 |
| 982 | 209.71 | humidity | 50 | 14400 | > th | dose dependent | rect. | 3 | 5 |
| 995 | 209.77 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 4 |