BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0628500 Os07g0628500|AK070963
(265 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G47640.1 | chr3:17568035-17569101 FORWARD LENGTH=241 126 1e-29
AT3G19860.2 | chr3:6903842-6905863 FORWARD LENGTH=338 79 2e-15
AT4G36060.1 | chr4:17055397-17056567 FORWARD LENGTH=287 76 2e-14
AT5G54680.1 | chr5:22217270-22218993 FORWARD LENGTH=235 65 5e-11
AT3G23210.1 | chr3:8283255-8284915 REVERSE LENGTH=321 54 6e-08
AT1G51070.2 | chr1:18928018-18929513 FORWARD LENGTH=293 54 1e-07
AT4G14410.1 | chr4:8300077-8301503 FORWARD LENGTH=284 50 1e-06
>AT3G47640.1 | chr3:17568035-17569101 FORWARD LENGTH=241
Length = 240
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 121/213 (56%), Gaps = 13/213 (6%)
Query: 24 GIVNKKCDK-KAPKRIHKSEREKLKRDKQNDLFNELGNLLEPDRQNNGKACVLGETTRIL 82
+++C K K PKRI+K+ RE+LKR+ N+LF EL + LE ++QN+GKA +L E TR L
Sbjct: 15 ATADERCRKGKVPKRINKAVRERLKREHLNELFIELADTLELNQQNSGKASILCEATRFL 74
Query: 83 KDLLSQVESLRKENSSLKNESHYVALERNELHDDNSMLRTEILELQNELRTRMEGNPVWS 142
KD+ Q+ESLRKE++SL +ES YV E+NEL ++ S+L TEI +LQNE+ R N
Sbjct: 75 KDVFGQIESLRKEHASLLSESSYVTTEKNELKEETSVLETEISKLQNEIEAR--ANQSKP 132
Query: 143 HVNTRPALRVPYPTTGVFP---VQHLPHLPVTTTAAFPQQLPVIIEQHYAATPRELQLFP 199
+NT PA + V P LP+ F Q + H AT L + P
Sbjct: 133 DLNTSPAPEYHHHHYQQQHPERVSQFPGLPIFQGPGFQQSATTL---HPPATVLVLPIQP 189
Query: 200 ESATSEDSEPSQEHG----ISDHVTRPQPRYPT 228
+ T + SE +Q S +V++P PRY +
Sbjct: 190 DPQTQDISEMTQAQQPLMFNSSNVSKPCPRYAS 222
>AT3G19860.2 | chr3:6903842-6905863 FORWARD LENGTH=338
Length = 337
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 70/106 (66%)
Query: 36 KRIHKSEREKLKRDKQNDLFNELGNLLEPDRQNNGKACVLGETTRILKDLLSQVESLRKE 95
++ K+ REKL+R+K N+ F ELGN+L+P+R N KA +L +T ++LK+L S+V L+ E
Sbjct: 59 RKSQKAGREKLRREKLNEHFVELGNVLDPERPKNDKATILTDTVQLLKELTSEVNKLKSE 118
Query: 96 NSSLKNESHYVALERNELHDDNSMLRTEILELQNELRTRMEGNPVW 141
++L +ES + E+N+L ++ + L+++I L + + R+ W
Sbjct: 119 YTALTDESRELTQEKNDLREEKTSLKSDIENLNLQYQQRLRSMSPW 164
>AT4G36060.1 | chr4:17055397-17056567 FORWARD LENGTH=287
Length = 286
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 68/103 (66%)
Query: 39 HKSEREKLKRDKQNDLFNELGNLLEPDRQNNGKACVLGETTRILKDLLSQVESLRKENSS 98
K+EREKL+RDK + F ELGN L+P+R + KA VL +T ++LKD+++QV+ L+ E +
Sbjct: 48 QKAEREKLRRDKLKEQFLELGNALDPNRPKSDKASVLTDTIQMLKDVMNQVDRLKAEYET 107
Query: 99 LKNESHYVALERNELHDDNSMLRTEILELQNELRTRMEGNPVW 141
L ES + E++EL ++ + L+++I L + + R++ W
Sbjct: 108 LSQESRELIQEKSELREEKATLKSDIEILNAQYQHRIKTMVPW 150
>AT5G54680.1 | chr5:22217270-22218993 FORWARD LENGTH=235
Length = 234
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 85/189 (44%), Gaps = 39/189 (20%)
Query: 40 KSEREKLKRDKQNDLFNELGNLLEPDRQ-NNGKACVLGETTRILKDLLSQVESLRKENSS 98
K+ REK +RD+ ND F ELG +LEP KA +L + R++ L + + L+ NSS
Sbjct: 76 KACREKQRRDRLNDKFMELGAILEPGNPPKTDKAAILVDAVRMVTQLRGEAQKLKDSNSS 135
Query: 99 LKNESHYVALERNELHDDNSMLRTEILELQNELRTRMEGNPVWSHVNTRPALRVPYPTTG 158
L+++ + E+NEL D+ L+TE +L+ +L+ A+ P P+
Sbjct: 136 LQDKIKELKTEKNELRDEKQRLKTEKEKLEQQLK----------------AMNAPQPS-- 177
Query: 159 VFPVQHLPHLPVTTTAAFPQ-----QLPVIIEQHYAATPRELQLFPESATSEDSEPSQEH 213
FP P +P +A Q +P+I +P A + P+
Sbjct: 178 FFPAP--PMMPTAFASAQGQAPGNKMVPIIS-------------YPGVAMWQFMPPASVD 222
Query: 214 GISDHVTRP 222
DHV RP
Sbjct: 223 TSQDHVLRP 231
>AT3G23210.1 | chr3:8283255-8284915 REVERSE LENGTH=321
Length = 320
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 76/140 (54%), Gaps = 13/140 (9%)
Query: 40 KSEREKLKRDKQNDLFNELGNLLEPDRQ-NNGKACVLGETTRILKDLLSQVESLRKENSS 98
K+ REKL+R+K ND F +L ++LEP R K+ +L + R++ L + L++ N
Sbjct: 167 KACREKLRREKLNDKFMDLSSVLEPGRTPKTDKSAILDDAIRVVNQLRGEAHELQETNQK 226
Query: 99 LKNESHYVALERNELHDDNSMLRTEILELQNELRTRMEGNPVWSHVNTRPA------LRV 152
L E + ++NEL ++ +L+ E +++ +L++ + +P + + PA + V
Sbjct: 227 LLEEIKSLKADKNELREEKLVLKAEKEKMEQQLKSMVVPSPGF-MPSQHPAAFHSHKMAV 285
Query: 153 PYPTTGVFPVQHLPHLPVTT 172
YP G +P P++P+ +
Sbjct: 286 AYP-YGYYP----PNMPMWS 300
>AT1G51070.2 | chr1:18928018-18929513 FORWARD LENGTH=293
Length = 292
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 40 KSEREKLKRDKQNDLFNELGNLLEPDRQ-NNGKACVLGETTRILKDLLSQVESLRKENSS 98
K+ REK +RD+ ND F EL ++LEP R K ++ + R++ + + L+ NSS
Sbjct: 137 KACREKQRRDRLNDKFTELSSVLEPGRTPKTDKVAIINDAIRMVNQARDEAQKLKDLNSS 196
Query: 99 LKNESHYVALERNELHDDNSMLRTEILELQNELRT 133
L+ + + E+NEL D+ L+ E + +L+
Sbjct: 197 LQEKIKELKDEKNELRDEKQKLKVEKERIDQQLKA 231
>AT4G14410.1 | chr4:8300077-8301503 FORWARD LENGTH=284
Length = 283
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 8/131 (6%)
Query: 40 KSEREKLKRDKQNDLFNELGNLLEPDRQ-NNGKACVLGETTRILKDLLSQVESLRKENSS 98
K+ RE+L+R+K N+ F +L ++LEP R K +L + RIL L + L + N
Sbjct: 135 KACRERLRREKLNERFMDLSSVLEPGRTPKTDKPAILDDAIRILNQLRDEALKLEETNQK 194
Query: 99 LKNESHYVALERNELHDDNSMLRTEILELQNELRTRMEGNPVWSHVNTRPAL-----RVP 153
L E + E+NEL ++ +L+ + + + +L++ P + PA
Sbjct: 195 LLEEIKSLKAEKNELREEKLVLKADKEKTEQQLKSMTA--PSSGFIPHIPAAFNHNKMAV 252
Query: 154 YPTTGVFPVQH 164
YP+ G P+ H
Sbjct: 253 YPSYGYMPMWH 263
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.131 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,075,325
Number of extensions: 269399
Number of successful extensions: 902
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 900
Number of HSP's successfully gapped: 7
Length of query: 265
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 168
Effective length of database: 8,447,217
Effective search space: 1419132456
Effective search space used: 1419132456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 111 (47.4 bits)