BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0628500 Os07g0628500|AK070963
(265 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0628500 Basic helix-loop-helix dimerisation region bHL... 526 e-150
Os03g0379300 Basic helix-loop-helix dimerisation region bHL... 234 6e-62
Os11g0601700 Basic helix-loop-helix dimerisation region bHL... 157 8e-39
Os02g0433600 Basic helix-loop-helix dimerisation region bHL... 92 6e-19
Os08g0138500 Similar to Helix-loop-helix-like protein (Frag... 70 2e-12
Os07g0543000 Similar to Helix-loop-helix-like protein (Frag... 66 3e-11
>Os07g0628500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 265
Score = 526 bits (1355), Expect = e-150, Method: Compositional matrix adjust.
Identities = 257/265 (96%), Positives = 257/265 (96%)
Query: 1 MVPRDRVNXXXXXXXXEGRLVQSGIVNKKCDKKAPKRIHKSEREKLKRDKQNDLFNELGN 60
MVPRDRVN EGRLVQSGIVNKKCDKKAPKRIHKSEREKLKRDKQNDLFNELGN
Sbjct: 1 MVPRDRVNAAAAGGGGEGRLVQSGIVNKKCDKKAPKRIHKSEREKLKRDKQNDLFNELGN 60
Query: 61 LLEPDRQNNGKACVLGETTRILKDLLSQVESLRKENSSLKNESHYVALERNELHDDNSML 120
LLEPDRQNNGKACVLGETTRILKDLLSQVESLRKENSSLKNESHYVALERNELHDDNSML
Sbjct: 61 LLEPDRQNNGKACVLGETTRILKDLLSQVESLRKENSSLKNESHYVALERNELHDDNSML 120
Query: 121 RTEILELQNELRTRMEGNPVWSHVNTRPALRVPYPTTGVFPVQHLPHLPVTTTAAFPQQL 180
RTEILELQNELRTRMEGNPVWSHVNTRPALRVPYPTTGVFPVQHLPHLPVTTTAAFPQQL
Sbjct: 121 RTEILELQNELRTRMEGNPVWSHVNTRPALRVPYPTTGVFPVQHLPHLPVTTTAAFPQQL 180
Query: 181 PVIIEQHYAATPRELQLFPESATSEDSEPSQEHGISDHVTRPQPRYPTPTATLPVNLFPV 240
PVIIEQHYAATPRELQLFPESATSEDSEPSQEHGISDHVTRPQPRYPTPTATLPVNLFPV
Sbjct: 181 PVIIEQHYAATPRELQLFPESATSEDSEPSQEHGISDHVTRPQPRYPTPTATLPVNLFPV 240
Query: 241 FPGRQDQQCSSGTSGTNEEDRIGRS 265
FPGRQDQQCSSGTSGTNEEDRIGRS
Sbjct: 241 FPGRQDQQCSSGTSGTNEEDRIGRS 265
>Os03g0379300 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 252
Score = 234 bits (596), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 128/253 (50%), Positives = 169/253 (66%), Gaps = 7/253 (2%)
Query: 1 MVPRDRVNXXXXXXXXEG-RLVQSGIVNKKCDKKAPKRIHKSEREKLKRDKQNDLFNELG 59
MVP +R + +LV I +KKC KK P+++HKSEREKLKR NDLF ELG
Sbjct: 1 MVPSERGDVATAIRPAAADKLVHGPISDKKCRKKVPRKVHKSEREKLKRGHLNDLFGELG 60
Query: 60 NLLEPDRQNNGKACVLGETTRILKDLLSQVESLRKENSSLKNESHYVALERNELHDDNSM 119
N+LE DRQ+NGKAC+L +TTRIL+DLLSQV+SLR+ENS+L+NES+YV +ERNEL D+N
Sbjct: 61 NMLEADRQSNGKACILTDTTRILRDLLSQVKSLRQENSTLQNESNYVTMERNELQDENGA 120
Query: 120 LRTEILELQNELRTRMEGNPVWSHVNTRPALRVPYPTTGVFPVQH-LPHLPVTTTAAFPQ 178
LR+EI +LQNELR R G+P W H T L VP VFP Q + P+TT+ FP
Sbjct: 121 LRSEISDLQNELRMRATGSPGWGHGATGSPLPVPPSPGTVFPSQQPMQPSPMTTSTVFPL 180
Query: 179 QLPV---IIEQHYAATPRELQLFPESATSEDSEPSQEHGISDHVTRPQPRYPTPTATLPV 235
Q P+ + + A P EL+LF E+ +ED EPS++ ++V RPQPRYPT ++ P+
Sbjct: 181 QQPLPQPTVIEPSARQPLELKLFLEAPPAEDPEPSEDQEAPNNVARPQPRYPTEASSWPI 240
Query: 236 NLFPVFPGRQDQQ 248
+L P +D+Q
Sbjct: 241 SLG--LPRMEDEQ 251
>Os11g0601700 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 278
Score = 157 bits (397), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 138/243 (56%), Gaps = 19/243 (7%)
Query: 24 GIVNKKCDKKAPKRIHKSEREKLKRDKQNDLFNELGNLLEPDRQNNGKACVLGETTRILK 83
G ++K+ +KAPK+ HK+EREKLKRD+ NDLF EL ++L+P+RQN+GKA VLG+ R+L+
Sbjct: 35 GSLDKRSQEKAPKKTHKAEREKLKRDQLNDLFVELSSMLDPERQNSGKATVLGDAARVLR 94
Query: 84 DLLSQVESLRKENSSLKNESHYVALERNELHDDNSMLRTEILELQNELRTRMEGN----- 138
DL+SQVESLRKE S+L E YV E NEL ++N MLR +ILEL NE+ RM N
Sbjct: 95 DLVSQVESLRKEQSALLTERQYVGSENNELQEENIMLRAQILELHNEICARMGNNHLNQS 154
Query: 139 ------PVWSHVNTRPALRVPYPTTGVFPVQHLPHLPVTTTAAFPQQ--LPVIIEQHYAA 190
PV ++ + VP+ G P + H P T + Q Q YA+
Sbjct: 155 NLAMSQPVANNGSNSATQPVPHHIWGNGPNLAMVH-PTNTLSPLHNQHHQSAGASQVYAS 213
Query: 191 TPRELQLFPESATSEDSEPSQEHGISDHVTRPQPRYPTPTATLPVNLFPVFPGRQDQQCS 250
P+ELQLFP ++ S + E S+ S T T +LP L P ++ S
Sbjct: 214 RPQELQLFPGTSVSTERERSRAGSGSTPAT-----SSGLTDSLPGQLRLSLPQSSQEENS 268
Query: 251 SGT 253
SG+
Sbjct: 269 SGS 271
>Os02g0433600 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 343
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 75/128 (58%), Gaps = 15/128 (11%)
Query: 34 APKRIHKSEREKLKRDKQNDLFNELGNLLEPDRQNNGKACVLGETTRILKDLLSQVESLR 93
A +++ K++REK++RD+ N+ F ELG+ L+PDR N KA +L + ++LKDL SQV L+
Sbjct: 38 ATRKVQKADREKMRRDRLNEQFQELGSTLDPDRPRNDKATILSDAIQMLKDLTSQVNKLK 97
Query: 94 KENSSLKNESHYVALERNELHDDNSMLRTEILELQNELRTRMEGNPVWSHVNTRPALRVP 153
E +SL E+ + E+NEL D+ L+ E+ L + + RM RV
Sbjct: 98 AEYTSLSEEARELTQEKNELRDEKVSLKFEVDNLNTQYQQRM---------------RVL 142
Query: 154 YPTTGVFP 161
YP TG+ P
Sbjct: 143 YPWTGMEP 150
>Os08g0138500 Similar to Helix-loop-helix-like protein (Fragment)
Length = 253
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Query: 40 KSEREKLKRDKQNDLFNELGNLLEPDRQ-NNGKACVLGETTRILKDLLSQVESLRKENSS 98
K+ REK++RDK ND F ELG LEP + + KA +L + TR++ L ++ + L+ N S
Sbjct: 87 KASREKIRRDKMNDRFLELGTTLEPGKPVKSDKAAILSDATRMVIQLRAEAKQLKDTNES 146
Query: 99 LKNESHYVALERNELHDDNSMLRTEILELQNELRTRMEGNPVWSHVNTRPALRVPYPTTG 158
L+++ + E++EL D+ L+ E L+ +++ H PA PYP
Sbjct: 147 LEDKIKELKAEKDELRDEKQKLKVEKETLEQQVKILTATPAYMPHPTLMPA---PYPQAP 203
Query: 159 VFPVQH 164
+ P H
Sbjct: 204 LAPFHH 209
>Os07g0543000 Similar to Helix-loop-helix-like protein (Fragment)
Length = 256
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 25/138 (18%)
Query: 40 KSEREKLKRDKQNDLFNELGNLLEPDRQ-NNGKACVLGETTRILKDLLSQVESLRKENSS 98
K+ REK++RDK N+ F ELG +LEP + K+ +L + R++ +L S+ + L++ N S
Sbjct: 97 KACREKVRRDKLNERFLELGAVLEPGKTPKMDKSSILNDAIRVMAELRSEAQKLKESNES 156
Query: 99 LKNESHYVALERNELHDDNSMLRTEILELQNELRTRMEGNPVWSHVNTRPALRVPYPTTG 158
L+ + + E+NEL D+ L+ E L+ +++ +N RP+
Sbjct: 157 LQEKIKELKAEKNELRDEKQKLKAEKESLEQQIK----------FLNARPSF-------- 198
Query: 159 VFPVQHLPHLPVTTTAAF 176
+PH PV +AF
Sbjct: 199 ------VPHPPVIPASAF 210
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.131 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,475,137
Number of extensions: 433114
Number of successful extensions: 1295
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1292
Number of HSP's successfully gapped: 7
Length of query: 265
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 166
Effective length of database: 11,866,615
Effective search space: 1969858090
Effective search space used: 1969858090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 155 (64.3 bits)