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Os11g0601700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.27 (0.0238) R2 : 0.664
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.78 (0.078) R2dC : 0.682 R2C : -0.454
β3 : 2.42 (0.0827) R2dE : 1.11 R2E : -0.019
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0502 (0.0508) R2dN8 : 0.000315 R2N8 : 0.00859
σ : 0.445
deviance : 91.2
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C
peak time of C : 2.82
E
wheather : temperature
threshold : 9.883
memory length : 814
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.4
open length of G : 5.28

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
83.01 0.428 8.26 0.483 1.78 2.39 -0.744 0.372 0.116 2.54 7.478 802 2.43 5.13
83.24 0.425 8.27 0.472 1.82 2.44 -0.898 -- 0.109 2.45 7.388 800 2.47 5.13
83.84 0.426 8.26 0.569 1.77 2.36 -- 1.05 0.122 2.68 8.177 805 2.49 5.08
86.21 0.432 8.26 0.465 1.75 2.34 -- -- 0.102 2.74 8.588 810 2.42 5.22
104.35 0.476 8.22 0.496 -- 2.3 -- 1.31 0.134 -- 1.296 1913 1 6
132.75 0.54 8.16 0.724 1.45 -- 0.7 -- 0.38 7.84 -- -- -- --
134.07 0.542 8.16 0.741 1.45 -- -- -- 0.378 7.74 -- -- -- --
103.17 0.473 8.26 0.428 -- 2.34 -- -- 0.102 -- -0.5322 1884 1.05 6.22
91.2 0.445 8.27 -- 1.78 2.42 -- -- 0.0502 2.82 9.883 814 2.4 5.28
248.35 0.736 8.2 0.759 -- -- -- -- 0.399 -- -- -- -- --
148.53 0.57 8.18 -- 1.46 -- -- -- 0.296 7.7 -- -- -- --
106.96 0.482 8.28 -- -- 2.41 -- -- 0.00237 -- 2.316 1904 0.817 6.37
263.54 0.758 8.21 -- -- -- -- -- 0.315 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 90.33 temperature 10 720 > th dose dependent rect. 2 6
7 92.19 temperature 10 270 > th dose dependent rect. 3 14
10 92.64 temperature 30 720 < th dose dependent rect. 24 10
26 93.84 temperature 15 10 > th dose dependent rect. 5 15
43 94.74 temperature 30 270 < th dose independent rect. 7 20
48 95.04 temperature 10 720 > th dose dependent sin 6 NA
63 95.65 temperature 30 720 < th dose dependent sin 6 NA
64 95.65 temperature 10 720 > th dose dependent rect. 23 9
73 95.99 temperature 20 720 > th dose independent rect. 4 4
75 95.99 temperature 20 10 > th dose dependent rect. 5 17
108 96.52 temperature 25 720 < th dose dependent rect. 5 2
122 96.80 temperature 10 720 > th dose dependent rect. 21 17
134 96.97 temperature 10 720 > th dose dependent rect. 20 13
137 97.01 temperature 10 720 > th dose dependent rect. 23 16
154 97.31 temperature 10 720 > th dose dependent rect. 3 10
196 97.79 temperature 30 270 < th dose dependent rect. 7 8
260 98.49 temperature 20 720 < th dose independent rect. 4 3
309 98.89 temperature 30 270 < th dose independent rect. 7 8
472 100.37 temperature 30 10 < th dose independent rect. 8 21
556 101.11 temperature 20 720 > th dose independent rect. 4 10
600 101.37 temperature 30 10 < th dose independent rect. 11 16
775 102.56 temperature 25 270 < th dose independent rect. 8 3
825 102.96 humidity 50 270 > th dose independent rect. 7 19
826 102.96 temperature 10 270 > th dose dependent sin 0 NA
912 103.50 radiation 10 270 < th dose dependent rect. 10 17