BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0601700 Os11g0601700|AK068017
(278 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0601700 Basic helix-loop-helix dimerisation region bHL... 486 e-138
Os07g0628500 Basic helix-loop-helix dimerisation region bHL... 154 1e-37
Os03g0379300 Basic helix-loop-helix dimerisation region bHL... 137 1e-32
Os02g0433600 Basic helix-loop-helix dimerisation region bHL... 88 6e-18
Os02g0116600 Basic helix-loop-helix dimerisation region bHL... 68 9e-12
>Os11g0601700 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 278
Score = 486 bits (1252), Expect = e-138, Method: Compositional matrix adjust.
Identities = 242/267 (90%), Positives = 242/267 (90%)
Query: 1 MPQVRNQNLGMVADTEXXXXXXXXXNAASDKAVDGSLDKRSQEKAPKKTHKAEREKLKRD 60
MPQVRNQNLGMVADTE NAASDKAVDGSLDKRSQEKAPKKTHKAEREKLKRD
Sbjct: 1 MPQVRNQNLGMVADTESSGSLGGSSNAASDKAVDGSLDKRSQEKAPKKTHKAEREKLKRD 60
Query: 61 QLNDLFVELSSMLDPERQNSGKATVLGDAARVLRDLVSQVESLRKEQSALLTERQYVGSE 120
QLNDLFVELSSMLDPERQNSGKATVLGDAARVLRDLVSQVESLRKEQSALLTERQYVGSE
Sbjct: 61 QLNDLFVELSSMLDPERQNSGKATVLGDAARVLRDLVSQVESLRKEQSALLTERQYVGSE 120
Query: 121 NNELQEENIMLRAQILELHNEICARMGNNHLNQSNLAMSQPVANNGSNSATQPVPHHIWG 180
NNELQEENIMLRAQILELHNEICARMGNNHLNQSNLAMSQPVANNGSNSATQPVPHHIWG
Sbjct: 121 NNELQEENIMLRAQILELHNEICARMGNNHLNQSNLAMSQPVANNGSNSATQPVPHHIWG 180
Query: 181 NGPNLAMVHPTNTLSPLHNQHHQSAGASQVYASRPQELQLFPGTSVSTERERXXXXXXXX 240
NGPNLAMVHPTNTLSPLHNQHHQSAGASQVYASRPQELQLFPGTSVSTERER
Sbjct: 181 NGPNLAMVHPTNTLSPLHNQHHQSAGASQVYASRPQELQLFPGTSVSTERERSRAGSGST 240
Query: 241 XXXXXXXXDSLPGQLRLSLPQSSQEEN 267
DSLPGQLRLSLPQSSQEEN
Sbjct: 241 PATSSGLTDSLPGQLRLSLPQSSQEEN 267
>Os07g0628500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 265
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/198 (45%), Positives = 122/198 (61%), Gaps = 14/198 (7%)
Query: 35 GSLDKRSQEKAPKKTHKAEREKLKRDQLNDLFVELSSMLDPERQNSGKATVLGDAARVLR 94
G ++K+ +KAPK+ HK+EREKLKRD+ NDLF EL ++L+P+RQN+GKA VLG+ R+L+
Sbjct: 24 GIVNKKCDKKAPKRIHKSEREKLKRDKQNDLFNELGNLLEPDRQNNGKACVLGETTRILK 83
Query: 95 DLVSQVESLRKEQSALLTERQYVGSENNELQEENIMLRAQILELHNEICARMGNNHLNQS 154
DL+SQVESLRKE S+L E YV E NEL ++N MLR +ILEL NE+ RM N
Sbjct: 84 DLLSQVESLRKENSSLKNESHYVALERNELHDDNSMLRTEILELQNELRTRMEGN----- 138
Query: 155 NLAMSQPVANNGSNSATQPVPHHIWGNGPNLAMVH-PTNTLSPLHNQHHQSAGASQVYAS 213
PV ++ + VP+ G P + H P T + Q Q YA+
Sbjct: 139 ------PVWSHVNTRPALRVPYPTTGVFPVQHLPHLPVTTTAAFPQQ--LPVIIEQHYAA 190
Query: 214 RPQELQLFPGTSVSTERE 231
P+ELQLFP ++ S + E
Sbjct: 191 TPRELQLFPESATSEDSE 208
>Os03g0379300 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 252
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/200 (43%), Positives = 118/200 (59%), Gaps = 17/200 (8%)
Query: 27 AASDKAVDGSL-DKRSQEKAPKKTHKAEREKLKRDQLNDLFVELSSMLDPERQNSGKATV 85
AA+DK V G + DK+ ++K P+K HK+EREKLKR LNDLF EL +ML+ +RQ++GKA +
Sbjct: 16 AAADKLVHGPISDKKCRKKVPRKVHKSEREKLKRGHLNDLFGELGNMLEADRQSNGKACI 75
Query: 86 LGDAARVLRDLVSQVESLRKEQSALLTERQYVGSENNELQEENIMLRAQILELHNEICAR 145
L D R+LRDL+SQV+SLR+E S L E YV E NELQ+EN LR++I +L NE+ R
Sbjct: 76 LTDTTRILRDLLSQVKSLRQENSTLQNESNYVTMERNELQDENGALRSEISDLQNELRMR 135
Query: 146 MGNNHLNQSNLAMSQPVANNGSNSATQPVPHHIWGNGPNLAMVHP----TNTLSPLHNQH 201
A P +G+ + PVP P+ + P T+T+ PL
Sbjct: 136 -----------ATGSPGWGHGATGSPLPVPPSPGTVFPSQQPMQPSPMTTSTVFPLQQPL 184
Query: 202 HQSAGASQVYASRPQELQLF 221
Q + A +P EL+LF
Sbjct: 185 PQPT-VIEPSARQPLELKLF 203
>Os02g0433600 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 343
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 69/102 (67%)
Query: 45 APKKTHKAEREKLKRDQLNDLFVELSSMLDPERQNSGKATVLGDAARVLRDLVSQVESLR 104
A +K KA+REK++RD+LN+ F EL S LDP+R + KAT+L DA ++L+DL SQV L+
Sbjct: 38 ATRKVQKADREKMRRDRLNEQFQELGSTLDPDRPRNDKATILSDAIQMLKDLTSQVNKLK 97
Query: 105 KEQSALLTERQYVGSENNELQEENIMLRAQILELHNEICARM 146
E ++L E + + E NEL++E + L+ ++ L+ + RM
Sbjct: 98 AEYTSLSEEARELTQEKNELRDEKVSLKFEVDNLNTQYQQRM 139
>Os02g0116600 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 236
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 51 KAEREKLKRDQLNDLFVELSSMLDPERQNS-GKATVLGDAARVLRDLVSQVESLRKEQSA 109
KA REK++RD+LND F+ELSS+++P++Q KA +L DAAR+L +L + E L++
Sbjct: 71 KACREKIRRDRLNDRFLELSSVINPDKQAKLDKANILSDAARLLAELRGEAEKLKESNEK 130
Query: 110 LLTERQYVGSENNELQEENIMLRAQILELHNEI 142
L + + E NEL++E + L+A+ L ++
Sbjct: 131 LRETIKDLKVEKNELRDEKVTLKAEKERLEQQV 163
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.308 0.123 0.338
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,399,743
Number of extensions: 277335
Number of successful extensions: 918
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 915
Number of HSP's successfully gapped: 6
Length of query: 278
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 178
Effective length of database: 11,814,401
Effective search space: 2102963378
Effective search space used: 2102963378
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 155 (64.3 bits)