Os02g0433600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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Os02g0433600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.15 | 0.336 | 11.3 | 0.937 | 1.18 | 0.118 | 0.0504 | -1.6 | 0.205 | 0.734 | 19.99 | 4012 | -- | -- |
| 52.68 | 0.338 | 11.3 | 0.864 | 1.19 | 0.546 | 0.0551 | -- | 0.208 | 0.764 | 19.7 | 11035 | -- | -- |
| 51.14 | 0.333 | 11.3 | 0.93 | 1.18 | 0.116 | -- | -1.61 | 0.202 | 0.733 | 19.9 | 3996 | -- | -- |
| 52.68 | 0.338 | 11.3 | 0.908 | 1.19 | 0.594 | -- | -- | 0.216 | 0.721 | 19.7 | 11048 | -- | -- |
| 129.05 | 0.532 | 11.3 | 0.661 | -- | 0.572 | -- | -0.206 | 0.162 | -- | 19.9 | 3996 | -- | -- |
| 57.52 | 0.356 | 11.4 | 0.455 | 1.17 | -- | 0.126 | -- | 0.0385 | 0.716 | -- | -- | -- | -- |
| 57.58 | 0.355 | 11.4 | 0.45 | 1.17 | -- | -- | -- | 0.0378 | 0.714 | -- | -- | -- | -- |
| 129.26 | 0.532 | 11.3 | 0.628 | -- | 0.584 | -- | -- | 0.155 | -- | 19.9 | 3996 | -- | -- |
| 62.58 | 0.368 | 11.4 | -- | 1.19 | 0.162 | -- | -- | -0.00199 | 0.775 | 17.39 | 3128 | -- | -- |
| 143.22 | 0.559 | 11.3 | 0.493 | -- | -- | -- | -- | 0.0588 | -- | -- | -- | -- | -- |
| 62.93 | 0.371 | 11.4 | -- | 1.18 | -- | -- | -- | -0.0123 | 0.732 | -- | -- | -- | -- |
| 117.66 | 0.507 | 11.3 | -- | -- | 0.562 | -- | -- | 0.165 | -- | 26.29 | 47123 | -- | -- |
| 149.62 | 0.571 | 11.4 | -- | -- | -- | -- | -- | 0.00411 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.92 | humidity | 80 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 2 | 47.03 | humidity | 80 | 43200 | < th | dose dependent | rect. | 21 | 5 |
| 47 | 47.68 | humidity | 80 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 48 | 47.69 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 49 | 47.70 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 10 |
| 60 | 47.81 | humidity | 80 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 65 | 47.82 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 5 |
| 68 | 47.85 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 5 |
| 89 | 47.95 | wind | 3 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 92 | 47.96 | wind | 3 | 43200 | > th | dose independent | rect. | 5 | 11 |
| 93 | 47.96 | wind | 1 | 43200 | < th | dose dependent | rect. | 5 | 21 |
| 95 | 47.97 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 5 |
| 96 | 47.97 | wind | 3 | 43200 | < th | dose dependent | rect. | 6 | 8 |
| 100 | 47.99 | humidity | 80 | 43200 | > th | dose independent | rect. | 24 | 2 |
| 102 | 48.00 | humidity | 80 | 43200 | < th | dose independent | rect. | 24 | 6 |
| 105 | 48.00 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 21 |
| 112 | 48.01 | wind | 3 | 43200 | > th | dose independent | rect. | 19 | 22 |
| 128 | 48.05 | wind | 3 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 131 | 48.06 | humidity | 80 | 43200 | < th | dose independent | rect. | 17 | 15 |
| 140 | 48.08 | humidity | 80 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 141 | 48.08 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 142 | 48.08 | humidity | 80 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 156 | 48.10 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 15 |
| 157 | 48.10 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 15 |
| 177 | 48.14 | wind | 3 | 43200 | > th | dose independent | rect. | 23 | 18 |
| 180 | 48.15 | wind | 3 | 43200 | < th | dose independent | sin | 2 | NA |
| 199 | 48.17 | wind | 3 | 43200 | > th | dose independent | sin | 2 | NA |
| 212 | 48.19 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 213 | 48.19 | humidity | 80 | 43200 | > th | dose independent | rect. | 24 | 6 |
| 217 | 48.19 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 22 |
| 231 | 48.21 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 22 |
| 273 | 48.25 | wind | 3 | 43200 | < th | dose dependent | rect. | 19 | 18 |
| 282 | 48.26 | wind | 3 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 287 | 48.27 | wind | 3 | 43200 | > th | dose independent | no | NA | NA |
| 310 | 48.29 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 23 |
| 312 | 48.29 | wind | 3 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 317 | 48.30 | humidity | 80 | 43200 | < th | dose independent | sin | 11 | NA |
| 340 | 48.31 | wind | 3 | 43200 | > th | dose independent | rect. | 22 | 23 |
| 343 | 48.31 | wind | 5 | 43200 | < th | dose dependent | rect. | 19 | 22 |
| 344 | 48.32 | wind | 3 | 43200 | < th | dose independent | no | NA | NA |
| 347 | 48.32 | wind | 3 | 43200 | > th | dose independent | rect. | 5 | 23 |
| 348 | 48.32 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 23 |
| 349 | 48.32 | wind | 3 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 361 | 48.33 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 23 |
| 378 | 48.35 | wind | 3 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 409 | 48.37 | wind | 3 | 43200 | < th | dose independent | rect. | 5 | 23 |
| 410 | 48.37 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 23 |
| 440 | 48.40 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 455 | 48.41 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 2 |
| 469 | 48.41 | wind | 3 | 43200 | < th | dose dependent | sin | 3 | NA |
| 474 | 48.42 | humidity | 80 | 43200 | > th | dose independent | sin | 11 | NA |
| 496 | 48.43 | wind | 5 | 43200 | < th | dose dependent | rect. | 3 | 21 |
| 524 | 48.45 | wind | 5 | 43200 | < th | dose dependent | rect. | 1 | 23 |
| 525 | 48.45 | wind | 5 | 43200 | < th | dose dependent | rect. | 3 | 23 |
| 536 | 48.46 | wind | 5 | 43200 | < th | dose dependent | rect. | 8 | 23 |
| 557 | 48.48 | wind | 5 | 43200 | < th | dose dependent | no | NA | NA |
| 574 | 48.49 | wind | 5 | 43200 | < th | dose dependent | rect. | 11 | 23 |
| 575 | 48.49 | wind | 5 | 43200 | < th | dose dependent | rect. | 23 | 23 |
| 649 | 48.54 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 755 | 48.62 | wind | 3 | 43200 | > th | dose independent | sin | 12 | NA |
| 760 | 48.62 | wind | 3 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 810 | 48.65 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 21 |
| 812 | 48.66 | wind | 3 | 43200 | < th | dose independent | sin | 12 | NA |
| 814 | 48.66 | wind | 3 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 861 | 48.71 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 871 | 48.72 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 919 | 48.76 | wind | 3 | 43200 | < th | dose independent | rect. | 16 | 15 |
| 945 | 48.78 | wind | 5 | 43200 | < th | dose dependent | rect. | 15 | 16 |
| 960 | 48.79 | wind | 5 | 43200 | < th | dose dependent | sin | 12 | NA |
| 969 | 48.80 | wind | 3 | 43200 | < th | dose independent | rect. | 19 | 9 |