Os03g0379300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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Os03g0379300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 157.6 | 0.59 | 9.48 | 2.3 | 1.8 | -1.49 | 1.55 | 16.2 | -0.0883 | 8.37 | 29.15 | 1233 | -- | -- |
| 168.63 | 0.605 | 9.89 | -0.777 | 1.85 | 0.517 | 1.59 | -- | -0.489 | 8.21 | 31.86 | 19290 | -- | -- |
| 164.34 | 0.597 | 9.49 | 2.26 | 1.79 | -1.33 | -- | 14.5 | -0.0513 | 8.34 | 28.93 | 1341 | -- | -- |
| 174.6 | 0.615 | 9.9 | -0.726 | 1.83 | 0.567 | -- | -- | -0.537 | 8.28 | 31.89 | 18650 | -- | -- |
| 318.75 | 0.832 | 9.64 | 1.86 | -- | -3.17 | -- | 20.5 | -0.00249 | -- | 28.06 | 686 | -- | -- |
| 177.72 | 0.625 | 9.84 | -0.597 | 1.83 | -- | 1.48 | -- | -0.309 | 8.24 | -- | -- | -- | -- |
| 184.44 | 0.636 | 9.84 | -0.553 | 1.83 | -- | -- | -- | -0.31 | 8.23 | -- | -- | -- | -- |
| 333.71 | 0.851 | 9.84 | -0.188 | -- | -1.53 | -- | -- | -0.0663 | -- | 5.992 | 561 | -- | -- |
| 188.68 | 0.64 | 9.86 | -- | 1.83 | 0.357 | -- | -- | -0.39 | 8.31 | 31.48 | 18513 | -- | -- |
| 369.7 | 0.898 | 9.89 | -0.54 | -- | -- | -- | -- | -0.289 | -- | -- | -- | -- | -- |
| 192.5 | 0.649 | 9.83 | -- | 1.83 | -- | -- | -- | -0.249 | 8.26 | -- | -- | -- | -- |
| 328.56 | 0.844 | 9.83 | -- | -- | -1.28 | -- | -- | -0.0803 | -- | 24.07 | 594 | -- | -- |
| 377.39 | 0.907 | 9.88 | -- | -- | -- | -- | -- | -0.23 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 149.45 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 15 | 8 |
| 2 | 149.54 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 12 | 14 |
| 10 | 150.65 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 18 | 23 |
| 13 | 151.24 | atmosphere | 1000 | 270 | < th | dose independent | sin | 17 | NA |
| 24 | 152.11 | atmosphere | 1000 | 270 | > th | dose independent | sin | 18 | NA |
| 25 | 152.24 | atmosphere | 1005 | 270 | < th | dose dependent | rect. | 16 | 6 |
| 28 | 152.43 | atmosphere | 1005 | 270 | < th | dose dependent | rect. | 15 | 8 |
| 39 | 153.09 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 13 | 5 |
| 59 | 153.82 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 13 | 16 |
| 67 | 154.04 | radiation | 1 | 90 | < th | dose dependent | rect. | 17 | 2 |
| 87 | 154.53 | atmosphere | 1005 | 270 | < th | dose dependent | rect. | 19 | 1 |
| 94 | 154.65 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 12 | 14 |
| 95 | 154.67 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 13 | 9 |
| 102 | 154.79 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 20 | 21 |
| 132 | 155.54 | radiation | 1 | 90 | < th | dose independent | rect. | 17 | 2 |
| 142 | 155.62 | atmosphere | 1005 | 90 | < th | dose independent | rect. | 19 | 2 |
| 147 | 155.66 | atmosphere | 1005 | 270 | < th | dose dependent | sin | 16 | NA |
| 156 | 155.75 | atmosphere | 1005 | 10 | < th | dose independent | rect. | 18 | 3 |
| 165 | 155.88 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 22 | 20 |
| 190 | 156.16 | atmosphere | 1000 | 10 | < th | dose independent | sin | 14 | NA |
| 227 | 156.50 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 18 | 3 |
| 246 | 156.63 | atmosphere | 1000 | 270 | > th | dose independent | sin | 16 | NA |
| 258 | 156.71 | atmosphere | 1005 | 270 | < th | dose dependent | rect. | 15 | 14 |
| 293 | 157.04 | atmosphere | 1000 | 30 | > th | dose independent | sin | 16 | NA |
| 382 | 157.60 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 14 | 11 |
| 387 | 157.64 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 407 | 157.73 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 24 | 18 |
| 417 | 157.77 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 15 |
| 418 | 157.78 | atmosphere | 995 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 441 | 157.78 | atmosphere | 995 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 505 | 157.96 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 514 | 157.98 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 531 | 158.03 | temperature | 30 | 720 | > th | dose dependent | rect. | 12 | 1 |
| 571 | 158.20 | temperature | 25 | 4320 | > th | dose dependent | sin | 8 | NA |
| 606 | 158.30 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 21 |
| 629 | 158.41 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 3 | 21 |
| 653 | 158.49 | temperature | 30 | 1440 | < th | dose independent | sin | 7 | NA |
| 667 | 158.52 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 18 | 15 |
| 686 | 158.56 | temperature | 25 | 4320 | > th | dose dependent | rect. | 5 | 6 |
| 706 | 158.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 738 | 158.70 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 766 | 158.78 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 10 |
| 775 | 158.80 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 782 | 158.82 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 806 | 158.82 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 835 | 158.85 | temperature | 30 | 1440 | > th | dose independent | sin | 7 | NA |
| 836 | 158.85 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 854 | 158.88 | radiation | 1 | 30 | < th | dose dependent | sin | 20 | NA |
| 892 | 158.98 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 895 | 158.98 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 15 |
| 924 | 159.03 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 18 | 13 |
| 936 | 159.05 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 949 | 159.07 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 958 | 159.08 | temperature | 25 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 981 | 159.13 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 984 | 159.14 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 1 |