Os02g0116600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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Os02g0116600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8.84 | 0.14 | 13.4 | -0.742 | 0.386 | 0.211 | -0.0729 | -0.272 | -0.268 | 1.25 | 25.51 | 5476 | -- | -- |
| 8.89 | 0.139 | 13.4 | -0.668 | 0.387 | 0.205 | -0.101 | -- | -0.248 | 1.21 | 25.6 | 5480 | -- | -- |
| 8.85 | 0.139 | 13.4 | -0.741 | 0.386 | 0.211 | -- | -0.281 | -0.268 | 1.24 | 25.6 | 5477 | -- | -- |
| 8.91 | 0.139 | 13.4 | -0.661 | 0.386 | 0.193 | -- | -- | -0.246 | 1.23 | 25.64 | 5480 | -- | -- |
| 17.85 | 0.197 | 13.4 | -0.757 | -- | 0.285 | -- | -0.277 | -0.276 | -- | 25.44 | 5333 | -- | -- |
| 10.03 | 0.148 | 13.4 | -0.58 | 0.404 | -- | -0.0675 | -- | -0.207 | 1.22 | -- | -- | -- | -- |
| 10.05 | 0.148 | 13.4 | -0.578 | 0.404 | -- | -- | -- | -0.207 | 1.21 | -- | -- | -- | -- |
| 17.05 | 0.192 | 13.4 | -0.695 | -- | 0.313 | -- | -- | -0.302 | -- | 25.6 | 2495 | -- | -- |
| 14.12 | 0.175 | 13.3 | -- | 0.409 | -0.321 | -- | -- | -0.0336 | 1.19 | 21.6 | 47520 | -- | -- |
| 20.17 | 0.21 | 13.4 | -0.562 | -- | -- | -- | -- | -0.199 | -- | -- | -- | -- | -- |
| 18.86 | 0.203 | 13.4 | -- | 0.395 | -- | -- | -- | -0.142 | 1.15 | -- | -- | -- | -- |
| 23.79 | 0.227 | 13.3 | -- | -- | -0.348 | -- | -- | -0.0549 | -- | 18.22 | 47520 | -- | -- |
| 28.51 | 0.249 | 13.4 | -- | -- | -- | -- | -- | -0.136 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 8.70 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 3 | 8.74 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 17 | 9 |
| 16 | 8.77 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 21 | 13 |
| 17 | 8.77 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 21 | 13 |
| 19 | 8.77 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 24 | 8.77 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 31 | 8.78 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 18 | 15 |
| 34 | 8.78 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 13 | NA |
| 35 | 8.78 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 50 | 8.79 | temperature | 25.0 | 4320 | > th | dose independent | sin | 10 | NA |
| 59 | 8.79 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 18 | 15 |
| 80 | 8.80 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 94 | 8.80 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 21 | 22 |
| 102 | 8.80 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 104 | 8.81 | temperature | 25.0 | 4320 | < th | dose independent | sin | 9 | NA |
| 131 | 8.82 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 14 | 2 |
| 132 | 8.82 | humidity | 70.0 | 720 | > th | dose independent | rect. | 19 | 2 |
| 165 | 8.83 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 170 | 8.83 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 17 | 11 |
| 201 | 8.84 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 213 | 8.84 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 19 | 5 |
| 248 | 8.85 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 21 | 4 |
| 252 | 8.85 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 266 | 8.86 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 17 | 11 |
| 312 | 8.87 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 5 | 3 |
| 316 | 8.87 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 17 | 9 |
| 345 | 8.87 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 8 | 12 |
| 372 | 8.88 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 20 | 12 |
| 442 | 8.89 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 17 | 16 |
| 447 | 8.89 | temperature | 25.0 | 4320 | > th | dose dependent | no | NA | NA |
| 465 | 8.89 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 17 | 16 |
| 477 | 8.89 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 3 | 22 |
| 493 | 8.89 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 20 | 23 |
| 497 | 8.90 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 498 | 8.90 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 499 | 8.90 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 502 | 8.90 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 21 | 4 |
| 505 | 8.90 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 21 | 4 |
| 536 | 8.90 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 562 | 8.90 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 1 | 21 |
| 567 | 8.90 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 22 | 21 |
| 584 | 8.91 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 599 | 8.91 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 8 |
| 634 | 8.91 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 665 | 8.91 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 1 | 19 |
| 728 | 8.92 | humidity | 80.0 | 43200 | > th | dose dependent | sin | 16 | NA |
| 729 | 8.92 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 737 | 8.92 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 15 | 4 |
| 754 | 8.92 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 11 | 13 |
| 775 | 8.93 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 837 | 8.93 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 839 | 8.93 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 840 | 8.93 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 842 | 8.93 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 880 | 8.94 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 19 | 2 |
| 881 | 8.94 | radiation | 40.0 | 720 | < th | dose independent | rect. | 7 | 2 |
| 947 | 8.94 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 5 | 16 |
| 973 | 8.95 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 21 | 8 |
| 982 | 8.95 | radiation | 20.0 | 10 | < th | dose independent | rect. | 8 | 12 |