BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0116600 Os02g0116600|AK103434
(236 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G54680.1 | chr5:22217270-22218993 FORWARD LENGTH=235 140 5e-34
AT1G51070.2 | chr1:18928018-18929513 FORWARD LENGTH=293 127 5e-30
AT4G14410.1 | chr4:8300077-8301503 FORWARD LENGTH=284 123 1e-28
AT3G23210.1 | chr3:8283255-8284915 REVERSE LENGTH=321 118 2e-27
AT3G19860.2 | chr3:6903842-6905863 FORWARD LENGTH=338 60 1e-09
AT4G36060.1 | chr4:17055397-17056567 FORWARD LENGTH=287 59 2e-09
>AT5G54680.1 | chr5:22217270-22218993 FORWARD LENGTH=235
Length = 234
Score = 140 bits (353), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 112/202 (55%), Gaps = 8/202 (3%)
Query: 35 DGGLGIDDVSGDTCCLDQSVLGKRGRDESSSSGPKSKACREKIRRDRLNDRFLELSSVIN 94
+ G+D +G++ + KRGR ESSS+ SKACREK RRDRLND+F+EL +++
Sbjct: 41 NSSAGVDGSAGNSEASKEPGSKKRGRCESSSAT-SSKACREKQRRDRLNDKFMELGAILE 99
Query: 95 PDKQAKLDKANILSDXXXXXXXXXXXXXXXXXSNEKLRETIKDLKVEKNELRDEKVTLKA 154
P K DKA IL D SN L++ IK+LK EKNELRDEK LK
Sbjct: 100 PGNPPKTDKAAILVDAVRMVTQLRGEAQKLKDSNSSLQDKIKELKTEKNELRDEKQRLKT 159
Query: 155 EKERLEQQVKALSVAPTGFVXXXXXXXXXXXXXXXXXXXXYQALGNKNAPTPAAFQGMAM 214
EKE+LEQQ+KA++ F QA GNK P ++ G+AM
Sbjct: 160 EKEKLEQQLKAMNAPQPSFFPAPPMMPTAFASAQG------QAPGNKMVPI-ISYPGVAM 212
Query: 215 WQWLPPTAVDTTQDPKLWPPNA 236
WQ++PP +VDT+QD L PP A
Sbjct: 213 WQFMPPASVDTSQDHVLRPPVA 234
>AT1G51070.2 | chr1:18928018-18929513 FORWARD LENGTH=293
Length = 292
Score = 127 bits (319), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 105/201 (52%), Gaps = 11/201 (5%)
Query: 36 GGLGIDDVSGDTCCLDQSVLGKRGRDESSSSGPKSKACREKIRRDRLNDRFLELSSVINP 95
G + +D D + + KR + ES + G SKACREK RRDRLND+F ELSSV+ P
Sbjct: 103 GSVEVDGFLCDADVIKEPSSRKRIKTESCT-GSNSKACREKQRRDRLNDKFTELSSVLEP 161
Query: 96 DKQAKLDKANILSDXXXXXXXXXXXXXXXXXSNEKLRETIKDLKVEKNELRDEKVTLKAE 155
+ K DK I++D N L+E IK+LK EKNELRDEK LK E
Sbjct: 162 GRTPKTDKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKIKELKDEKNELRDEKQKLKVE 221
Query: 156 KERLEQQVKALSVAPTGFVXXXXXXXXXXXXXXXXXXXXYQALGNKNAPTPAAFQGMAMW 215
KER++QQ+KA+ P QA G+K P + G AMW
Sbjct: 222 KERIDQQLKAIKTQP---------QPQPCFLPNPQTLSQAQAPGSKLVPF-TTYPGFAMW 271
Query: 216 QWLPPTAVDTTQDPKLWPPNA 236
Q++PP AVDT+QD L PP A
Sbjct: 272 QFMPPAAVDTSQDHVLRPPVA 292
>AT4G14410.1 | chr4:8300077-8301503 FORWARD LENGTH=284
Length = 283
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/187 (38%), Positives = 102/187 (54%), Gaps = 17/187 (9%)
Query: 50 LDQSVLGKRGRDESSSSGPKSKACREKIRRDRLNDRFLELSSVINPDKQAKLDKANILSD 109
LD KR R S S G +KACRE++RR++LN+RF++LSSV+ P + K DK IL D
Sbjct: 114 LDDDCSRKRARTGSCSRGGGTKACRERLRREKLNERFMDLSSVLEPGRTPKTDKPAILDD 173
Query: 110 XXXXXXXXXXXXXXXXXSNEKLRETIKDLKVEKNELRDEKVTLKAEKERLEQQVKALSVA 169
+N+KL E IK LK EKNELR+EK+ LKA+KE+ EQQ+K+++
Sbjct: 174 AIRILNQLRDEALKLEETNQKLLEEIKSLKAEKNELREEKLVLKADKEKTEQQLKSMTAP 233
Query: 170 PTGFVXXXXXXXXXXXXXXXXXXXXYQALGNKNAPTPAAFQGMAMWQWLPPTAVDTTQDP 229
+GF+ NK A P ++ M MW ++P + DT++D
Sbjct: 234 SSGFIPHIPAAFNH----------------NKMAVYP-SYGYMPMWHYMPQSVRDTSRDQ 276
Query: 230 KLWPPNA 236
+L PP A
Sbjct: 277 ELRPPAA 283
>AT3G23210.1 | chr3:8283255-8284915 REVERSE LENGTH=321
Length = 320
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/187 (38%), Positives = 97/187 (51%), Gaps = 13/187 (6%)
Query: 50 LDQSVLGKRGRDESSSSGPKSKACREKIRRDRLNDRFLELSSVINPDKQAKLDKANILSD 109
++ GKR R S S P +KACREK+RR++LND+F++LSSV+ P + K DK+ IL D
Sbjct: 147 FEEECSGKR-RRTGSCSKPGTKACREKLRREKLNDKFMDLSSVLEPGRTPKTDKSAILDD 205
Query: 110 XXXXXXXXXXXXXXXXXSNEKLRETIKDLKVEKNELRDEKVTLKAEKERLEQQVKALSVA 169
+N+KL E IK LK +KNELR+EK+ LKAEKE++EQQ+K++ V
Sbjct: 206 AIRVVNQLRGEAHELQETNQKLLEEIKSLKADKNELREEKLVLKAEKEKMEQQLKSMVVP 265
Query: 170 PTGFVXXXXXXXXXXXXXXXXXXXXYQALGNKNAPTPAAFQGMAMWQWLPPTAVDTTQDP 229
GF+ Y M MW LPP DT++D
Sbjct: 266 SPGFMPSQHPAAFHSHKMAVAYPYGYYP------------PNMPMWSPLPPADRDTSRDL 313
Query: 230 KLWPPNA 236
K PP A
Sbjct: 314 KNLPPVA 320
>AT3G19860.2 | chr3:6903842-6905863 FORWARD LENGTH=338
Length = 337
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 71 KACREKIRRDRLNDRFLELSSVINPDKQAKLDKANILSDXXXXXXXXXXXXXXXXXSNEK 130
KA REK+RR++LN+ F+EL +V++P++ K DKA IL+D
Sbjct: 63 KAGREKLRREKLNEHFVELGNVLDPER-PKNDKATILTDTVQLLKELTSEVNKLKSEYTA 121
Query: 131 LRETIKDLKVEKNELRDEKVTLKAEKE--RLEQQVKALSVAPTG 172
L + ++L EKN+LR+EK +LK++ E L+ Q + S++P G
Sbjct: 122 LTDESRELTQEKNDLREEKTSLKSDIENLNLQYQQRLRSMSPWG 165
>AT4G36060.1 | chr4:17055397-17056567 FORWARD LENGTH=287
Length = 286
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 71 KACREKIRRDRLNDRFLELSSVINPDKQAKLDKANILSDXXXXXXXXXXXXXXXXXSNEK 130
KA REK+RRD+L ++FLEL + ++P++ K DKA++L+D E
Sbjct: 49 KAEREKLRRDKLKEQFLELGNALDPNR-PKSDKASVLTDTIQMLKDVMNQVDRLKAEYET 107
Query: 131 LRETIKDLKVEKNELRDEKVTLKAEKERLEQQVK 164
L + ++L EK+ELR+EK TLK++ E L Q +
Sbjct: 108 LSQESRELIQEKSELREEKATLKSDIEILNAQYQ 141
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.134 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,512,812
Number of extensions: 160919
Number of successful extensions: 622
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 607
Number of HSP's successfully gapped: 6
Length of query: 236
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 141
Effective length of database: 8,502,049
Effective search space: 1198788909
Effective search space used: 1198788909
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 110 (47.0 bits)