BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0116600 Os02g0116600|AK103434
(236 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0116600 Basic helix-loop-helix dimerisation region bHL... 369 e-102
Os07g0543000 Similar to Helix-loop-helix-like protein (Frag... 137 1e-32
Os08g0138500 Similar to Helix-loop-helix-like protein (Frag... 124 8e-29
Os02g0433600 Basic helix-loop-helix dimerisation region bHL... 73 2e-13
>Os02g0116600 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 236
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/236 (80%), Positives = 189/236 (80%)
Query: 1 MDGGGDPVDEFLIXXXXXXXXXXVFCDGVPTLPCDGGLGIDDVSGDTCCLDQSVLGKRGR 60
MDGGGDPVDEFLI VFCDGVPTLPCDGGLGIDDVSGDTCCLDQSVLGKRGR
Sbjct: 1 MDGGGDPVDEFLIGGGGEDGDLGVFCDGVPTLPCDGGLGIDDVSGDTCCLDQSVLGKRGR 60
Query: 61 DESSSSGPKSKACREKIRRDRLNDRFLELSSVINPDKQAKLDKANILSDXXXXXXXXXXX 120
DESSSSGPKSKACREKIRRDRLNDRFLELSSVINPDKQAKLDKANILSD
Sbjct: 61 DESSSSGPKSKACREKIRRDRLNDRFLELSSVINPDKQAKLDKANILSDAARLLAELRGE 120
Query: 121 XXXXXXSNEKLRETIKDLKVEKNELRDEKVTLKAEKERLEQQVKALSVAPTGFVXXXXXX 180
SNEKLRETIKDLKVEKNELRDEKVTLKAEKERLEQQVKALSVAPTGFV
Sbjct: 121 AEKLKESNEKLRETIKDLKVEKNELRDEKVTLKAEKERLEQQVKALSVAPTGFVPHLPHP 180
Query: 181 XXXXXXXXXXXXXXYQALGNKNAPTPAAFQGMAMWQWLPPTAVDTTQDPKLWPPNA 236
YQALGNKNAPTPAAFQGMAMWQWLPPTAVDTTQDPKLWPPNA
Sbjct: 181 AAFHPAAFPPFIPPYQALGNKNAPTPAAFQGMAMWQWLPPTAVDTTQDPKLWPPNA 236
>Os07g0543000 Similar to Helix-loop-helix-like protein (Fragment)
Length = 256
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/181 (46%), Positives = 103/181 (56%), Gaps = 7/181 (3%)
Query: 56 GKRGRDESSSSGPKSKACREKIRRDRLNDRFLELSSVINPDKQAKLDKANILSDXXXXXX 115
KR R ES + P SKACREK+RRD+LN+RFLEL +V+ P K K+DK++IL+D
Sbjct: 83 NKRPRSESGTR-PSSKACREKVRRDKLNERFLELGAVLEPGKTPKMDKSSILNDAIRVMA 141
Query: 116 XXXXXXXXXXXSNEKLRETIKDLKVEKNELRDEKVTLKAEKERLEQQVKALSVAPTGFVX 175
SNE L+E IK+LK EKNELRDEK LKAEKE LEQQ+K L+ P+ FV
Sbjct: 142 ELRSEAQKLKESNESLQEKIKELKAEKNELRDEKQKLKAEKESLEQQIKFLNARPS-FVP 200
Query: 176 XXXXXXXXXXXXXXXXXXXYQALGNKNAPTPAAFQGMAMWQWLPPTAVDTTQDPKLWPPN 235
QA G K + G MWQ++PP+ VDTT D K PP
Sbjct: 201 HPPVIPASAFTAPQG-----QAAGQKLMMPVIGYPGFPMWQFMPPSDVDTTDDTKSCPPV 255
Query: 236 A 236
A
Sbjct: 256 A 256
>Os08g0138500 Similar to Helix-loop-helix-like protein (Fragment)
Length = 253
Score = 124 bits (310), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 78/183 (42%), Positives = 94/183 (51%), Gaps = 2/183 (1%)
Query: 56 GKRGRDESSSSG-PKSKACREKIRRDRLNDRFLELSSVINPDKQAKLDKANILSDXXXXX 114
G R S S G P SKA REKIRRD++NDRFLEL + + P K K DKA ILSD
Sbjct: 71 GSNKRVRSGSCGRPTSKASREKIRRDKMNDRFLELGTTLEPGKPVKSDKAAILSDATRMV 130
Query: 115 XXXXXXXXXXXXSNEKLRETIKDLKVEKNELRDEKVTLKAEKERLEQQVKALSVAPTGFV 174
+NE L + IK+LK EK+ELRDEK LK EKE LEQQVK L+ P
Sbjct: 131 IQLRAEAKQLKDTNESLEDKIKELKAEKDELRDEKQKLKVEKETLEQQVKILTATPAYMP 190
Query: 175 XXXXXXXXXXXXXXXXXXXXY-QALGNKNAPTPAAFQGMAMWQWLPPTAVDTTQDPKLWP 233
QA G K + G MWQ++PP+ VDT++D + P
Sbjct: 191 HPTLMPAPYPQAPLAPFHHAQGQAAGQKLMMPFVGYPGYPMWQFMPPSEVDTSKDSEACP 250
Query: 234 PNA 236
P A
Sbjct: 251 PVA 253
>Os02g0433600 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 343
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 65/132 (49%), Gaps = 11/132 (8%)
Query: 33 PCDGGLGIDDVSGDTCCLDQSVLGKRGRDESSSSGPKSKACREKIRRDRLNDRFLELSSV 92
P DG D SG T C Q + R KA REK+RRDRLN++F EL S
Sbjct: 16 PRDGACPADS-SGKTECKTQGSIATRK---------VQKADREKMRRDRLNEQFQELGST 65
Query: 93 INPDKQAKLDKANILSDXXXXXXXXXXXXXXXXXSNEKLRETIKDLKVEKNELRDEKVTL 152
++PD+ + DKA ILSD L E ++L EKNELRDEKV+L
Sbjct: 66 LDPDR-PRNDKATILSDAIQMLKDLTSQVNKLKAEYTSLSEEARELTQEKNELRDEKVSL 124
Query: 153 KAEKERLEQQVK 164
K E + L Q +
Sbjct: 125 KFEVDNLNTQYQ 136
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.134 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,436,204
Number of extensions: 270447
Number of successful extensions: 736
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 730
Number of HSP's successfully gapped: 4
Length of query: 236
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 138
Effective length of database: 11,918,829
Effective search space: 1644798402
Effective search space used: 1644798402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 154 (63.9 bits)