Os08g0138500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Helix-loop-helix-like protein (Fragment).
FiT-DB / Search/ Help/ Sample detail
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Os08g0138500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Helix-loop-helix-like protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.38 | 0.271 | 12.6 | -1.39 | 0.974 | -0.272 | -0.0706 | -2.25 | -0.74 | 6.12 | 0.1925 | 4678 | -- | -- |
| 33.36 | 0.269 | 12.6 | -1.41 | 0.938 | -0.513 | -0.0343 | -- | -0.772 | 6.25 | 0.9935 | 19412 | -- | -- |
| 33.38 | 0.269 | 12.6 | -1.39 | 0.975 | -0.27 | -- | -2.23 | -0.741 | 6.11 | 0.1938 | 4839 | -- | -- |
| 33.11 | 0.268 | 12.6 | -1.32 | 0.964 | -0.561 | -- | -- | -0.775 | 6.16 | 1 | 19437 | -- | -- |
| 82.58 | 0.423 | 12.6 | -1.4 | -- | -0.249 | -- | -2.19 | -0.72 | -- | 0.2481 | 4739 | -- | -- |
| 39.27 | 0.294 | 12.6 | -1.56 | 0.968 | -- | -0.146 | -- | -0.717 | 6.15 | -- | -- | -- | -- |
| 39.33 | 0.294 | 12.6 | -1.56 | 0.968 | -- | -- | -- | -0.717 | 6.15 | -- | -- | -- | -- |
| 81.32 | 0.42 | 12.6 | -1.27 | -- | -0.588 | -- | -- | -0.749 | -- | 1 | 19036 | -- | -- |
| 62.48 | 0.368 | 12.6 | -- | 0.939 | -0.887 | -- | -- | -0.748 | 6.27 | 1.491 | 47520 | -- | -- |
| 87.87 | 0.438 | 12.6 | -1.53 | -- | -- | -- | -- | -0.695 | -- | -- | -- | -- | -- |
| 103.63 | 0.476 | 12.6 | -- | 0.945 | -- | -- | -- | -0.543 | 6.23 | -- | -- | -- | -- |
| 108.27 | 0.485 | 12.6 | -- | -- | -0.894 | -- | -- | -0.732 | -- | 1.293 | 47520 | -- | -- |
| 150.01 | 0.572 | 12.6 | -- | -- | -- | -- | -- | -0.525 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.51 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 2 | 29.51 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 3 | 29.55 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 4 | 29.65 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 5 | 29.85 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 6 | 29.85 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 7 | 29.85 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 8 | 29.93 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 16 |
| 9 | 29.95 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 23 | 18 |
| 11 | 29.97 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 13 |
| 13 | 29.99 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 10 |
| 14 | 30.00 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 23 | 8 |
| 18 | 30.07 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 19 | 30.07 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 16 |
| 21 | 30.10 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 16 |
| 23 | 30.10 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 16 |
| 26 | 30.14 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 8 |
| 31 | 30.19 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 10 |
| 39 | 30.22 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 8 |
| 44 | 30.24 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 49 | 30.26 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 10 |
| 50 | 30.26 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 10 |
| 52 | 30.28 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 13 |
| 55 | 30.30 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 8 |
| 56 | 30.30 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 8 |
| 57 | 30.33 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 12 | 5 |
| 63 | 30.35 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 12 | 5 |
| 71 | 30.39 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 5 |
| 72 | 30.39 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 5 |
| 77 | 30.42 | wind | 9.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 91 | 30.48 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 4 |
| 115 | 30.65 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 13 |
| 119 | 30.66 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 13 |
| 120 | 30.66 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 13 |
| 130 | 30.71 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 6 | NA |
| 131 | 30.71 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 139 | 30.74 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 143 | 30.74 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 150 | 30.76 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 3 | 17 |
| 151 | 30.76 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 9 |
| 154 | 30.77 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 3 | 17 |
| 157 | 30.77 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 3 | 17 |
| 164 | 30.82 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 165 | 30.82 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 189 | 30.88 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 215 | 30.97 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 2 | NA |
| 219 | 30.98 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 5 | NA |
| 223 | 30.99 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 5 | NA |
| 225 | 30.99 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 7 |
| 226 | 30.99 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 5 | NA |
| 228 | 30.99 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 7 |
| 232 | 31.00 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 2 | NA |
| 233 | 31.00 | wind | 3.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 234 | 31.00 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 2 | NA |
| 242 | 31.03 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 9 |
| 244 | 31.03 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 23 | 5 |
| 246 | 31.03 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 9 |
| 255 | 31.05 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 9 |
| 260 | 31.06 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 7 |
| 264 | 31.07 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 6 |
| 267 | 31.07 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 19 | 22 |
| 269 | 31.09 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 280 | 31.11 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 3 | NA |
| 296 | 31.13 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 3 |
| 306 | 31.16 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 4 |
| 308 | 31.16 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 23 | 21 |
| 309 | 31.16 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 4 |
| 312 | 31.17 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 2 |
| 315 | 31.17 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 23 | 21 |
| 316 | 31.17 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 320 | 31.17 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 23 | 21 |
| 333 | 31.20 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 2 |
| 339 | 31.21 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 5 |
| 346 | 31.21 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 2 |
| 384 | 31.26 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 16 |
| 393 | 31.28 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 427 | 31.30 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 19 |
| 428 | 31.31 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 447 | 31.34 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 545 | 31.46 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 12 |
| 571 | 31.49 | wind | 1.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 581 | 31.50 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 12 |
| 583 | 31.50 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 594 | 31.52 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 600 | 31.53 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 602 | 31.53 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 6 |
| 607 | 31.54 | wind | 3.0 | 43200 | < th | dose dependent | sin | 8 | NA |
| 629 | 31.57 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 11 |
| 650 | 31.58 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 2 | 18 |
| 653 | 31.59 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 11 |
| 658 | 31.59 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 11 |
| 678 | 31.61 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 23 | 21 |
| 693 | 31.63 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 724 | 31.67 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 731 | 31.68 | wind | 1.0 | 14400 | > th | dose independent | rect. | 3 | 2 |
| 732 | 31.68 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 8 |
| 738 | 31.69 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 8 |
| 744 | 31.69 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 8 |
| 760 | 31.73 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 761 | 31.73 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 4 |
| 805 | 31.79 | wind | 1.0 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 823 | 31.81 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 826 | 31.81 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 834 | 31.83 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 840 | 31.83 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 865 | 31.87 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 868 | 31.87 | wind | 1.0 | 43200 | < th | dose independent | rect. | 3 | 10 |
| 870 | 31.87 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 917 | 31.94 | wind | 1.0 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 918 | 31.94 | wind | 1.0 | 43200 | > th | dose independent | rect. | 3 | 10 |
| 947 | 31.99 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 18 | 23 |
| 957 | 31.99 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 18 | 23 |
| 961 | 32.00 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 8 |
| 964 | 32.00 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 18 | 23 |
| 983 | 32.02 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 11 |
| 994 | 32.03 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 3 |