BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0138500 Os08g0138500|AK102951
(253 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G54680.1 | chr5:22217270-22218993 FORWARD LENGTH=235 217 6e-57
AT1G51070.2 | chr1:18928018-18929513 FORWARD LENGTH=293 199 2e-51
AT3G23210.1 | chr3:8283255-8284915 REVERSE LENGTH=321 166 1e-41
AT4G14410.1 | chr4:8300077-8301503 FORWARD LENGTH=284 149 1e-36
AT3G19860.2 | chr3:6903842-6905863 FORWARD LENGTH=338 87 8e-18
AT4G36060.1 | chr4:17055397-17056567 FORWARD LENGTH=287 82 3e-16
AT3G47640.1 | chr3:17568035-17569101 FORWARD LENGTH=241 64 1e-10
>AT5G54680.1 | chr5:22217270-22218993 FORWARD LENGTH=235
Length = 234
Score = 217 bits (552), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 121/204 (59%), Positives = 140/204 (68%), Gaps = 9/204 (4%)
Query: 50 SNPSVEVSSYVNTTSYVLKEPGSNKRVRSGSCGRPTSKASREKIRRDKMNDRFLELGTTL 109
SN S V S KEPGS KR R S +SKA REK RRD++ND+F+ELG L
Sbjct: 40 SNSSAGVDGSAGN-SEASKEPGSKKRGRCESSSATSSKACREKQRRDRLNDKFMELGAIL 98
Query: 110 EPGKPVKSDKAAILSDATRMVIQLRAEAKQLKDTNESLEDKIKELKAEKDELRDEKQKLK 169
EPG P K+DKAAIL DA RMV QLR EA++LKD+N SL+DKIKELK EK+ELRDEKQ+LK
Sbjct: 99 EPGNPPKTDKAAILVDAVRMVTQLRGEAQKLKDSNSSLQDKIKELKTEKNELRDEKQRLK 158
Query: 170 VEKETLEQQVKILTATPAYMPHPTLMPAPYPQAPLAPFHHAQGQAAGQKLMMPFVGYPGY 229
EKE LEQQ+K + A P P+ PAP P P A F AQGQA G K M+P + YPG
Sbjct: 159 TEKEKLEQQLKAMNA-----PQPSFFPAP-PMMPTA-FASAQGQAPGNK-MVPIISYPGV 210
Query: 230 PMWQFMPPSEVDTSKDSEACPPVA 253
MWQFMPP+ VDTS+D PPVA
Sbjct: 211 AMWQFMPPASVDTSQDHVLRPPVA 234
>AT1G51070.2 | chr1:18928018-18929513 FORWARD LENGTH=293
Length = 292
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 113/217 (52%), Positives = 144/217 (66%), Gaps = 16/217 (7%)
Query: 41 FPWDASPSCSNP----SVEVSSYVNTTSYVLKEPGSNKRVRSGSCGRPTSKASREKIRRD 96
FP + S S P SVEV ++ + V+KEP S KR+++ SC SKA REK RRD
Sbjct: 88 FPKEVDESRSLPIAKGSVEVDGFL-CDADVIKEPSSRKRIKTESCTGSNSKACREKQRRD 146
Query: 97 KMNDRFLELGTTLEPGKPVKSDKAAILSDATRMVIQLRAEAKQLKDTNESLEDKIKELKA 156
++ND+F EL + LEPG+ K+DK AI++DA RMV Q R EA++LKD N SL++KIKELK
Sbjct: 147 RLNDKFTELSSVLEPGRTPKTDKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKIKELKD 206
Query: 157 EKDELRDEKQKLKVEKETLEQQVKILTATPAYMPHPTLMPAPYPQAPLAPFHHAQGQAAG 216
EK+ELRDEKQKLKVEKE ++QQ+K + P P P +P P +Q QA G
Sbjct: 207 EKNELRDEKQKLKVEKERIDQQLKAIKTQP--QPQPCFLPNPQ--------TLSQAQAPG 256
Query: 217 QKLMMPFVGYPGYPMWQFMPPSEVDTSKDSEACPPVA 253
KL +PF YPG+ MWQFMPP+ VDTS+D PPVA
Sbjct: 257 SKL-VPFTTYPGFAMWQFMPPAAVDTSQDHVLRPPVA 292
>AT3G23210.1 | chr3:8283255-8284915 REVERSE LENGTH=321
Length = 320
Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/201 (45%), Positives = 130/201 (64%), Gaps = 15/201 (7%)
Query: 54 VEVSSYVNTTSYVLKEPGSNKRVRSGSCGRPTSKASREKIRRDKMNDRFLELGTTLEPGK 113
+ SS V +E S KR R+GSC +P +KA REK+RR+K+ND+F++L + LEPG+
Sbjct: 134 INSSSSVGAVKEEFEEECSGKRRRTGSCSKPGTKACREKLRREKLNDKFMDLSSVLEPGR 193
Query: 114 PVKSDKAAILSDATRMVIQLRAEAKQLKDTNESLEDKIKELKAEKDELRDEKQKLKVEKE 173
K+DK+AIL DA R+V QLR EA +L++TN+ L ++IK LKA+K+ELR+EK LK EKE
Sbjct: 194 TPKTDKSAILDDAIRVVNQLRGEAHELQETNQKLLEEIKSLKADKNELREEKLVLKAEKE 253
Query: 174 TLEQQVKILTATPAYMPHPTLMPAPYPQAPLAPFHHAQGQAAGQKLMMPFVGY-PGYPMW 232
+EQQ+K + +P P MP+ +P A FH + A P+ Y P PMW
Sbjct: 254 KMEQQLKSMV-----VPSPGFMPSQHP----AAFHSHKMAVA-----YPYGYYPPNMPMW 299
Query: 233 QFMPPSEVDTSKDSEACPPVA 253
+PP++ DTS+D + PPVA
Sbjct: 300 SPLPPADRDTSRDLKNLPPVA 320
>AT4G14410.1 | chr4:8300077-8301503 FORWARD LENGTH=284
Length = 283
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/189 (45%), Positives = 121/189 (64%), Gaps = 21/189 (11%)
Query: 67 LKEPGSNKRVRSGSCGRPT-SKASREKIRRDKMNDRFLELGTTLEPGKPVKSDKAAILSD 125
L + S KR R+GSC R +KA RE++RR+K+N+RF++L + LEPG+ K+DK AIL D
Sbjct: 114 LDDDCSRKRARTGSCSRGGGTKACRERLRREKLNERFMDLSSVLEPGRTPKTDKPAILDD 173
Query: 126 ATRMVIQLRAEAKQLKDTNESLEDKIKELKAEKDELRDEKQKLKVEKETLEQQVKILTA- 184
A R++ QLR EA +L++TN+ L ++IK LKAEK+ELR+EK LK +KE EQQ+K +TA
Sbjct: 174 AIRILNQLRDEALKLEETNQKLLEEIKSLKAEKNELREEKLVLKADKEKTEQQLKSMTAP 233
Query: 185 TPAYMPHPTLMPAPYPQAPLAPFHHAQGQAAGQKLMMPFVGYPGYPMWQFMPPSEVDTSK 244
+ ++PH +PA + +A + P GY PMW +MP S DTS+
Sbjct: 234 SSGFIPH---IPAAFNHNKMAVY--------------PSYGY--MPMWHYMPQSVRDTSR 274
Query: 245 DSEACPPVA 253
D E PP A
Sbjct: 275 DQELRPPAA 283
>AT3G19860.2 | chr3:6903842-6905863 FORWARD LENGTH=338
Length = 337
Score = 87.0 bits (214), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 77/118 (65%), Gaps = 5/118 (4%)
Query: 82 GRPTSKASREKIRRDKMNDRFLELGTTLEPGKPVKSDKAAILSDATRMVIQLRAEAKQLK 141
R + KA REK+RR+K+N+ F+ELG L+P +P K+DKA IL+D +++ +L +E +LK
Sbjct: 58 ARKSQKAGREKLRREKLNEHFVELGNVLDPERP-KNDKATILTDTVQLLKELTSEVNKLK 116
Query: 142 DTNESLEDKIKELKAEKDELRDEKQKLK--VEKETLEQQVKILTATP--AYMPHPTLM 195
+L D+ +EL EK++LR+EK LK +E L+ Q ++ + +P A M H +M
Sbjct: 117 SEYTALTDESRELTQEKNDLREEKTSLKSDIENLNLQYQQRLRSMSPWGAAMDHTVMM 174
>AT4G36060.1 | chr4:17055397-17056567 FORWARD LENGTH=287
Length = 286
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 72/109 (66%), Gaps = 4/109 (3%)
Query: 85 TSKASREKIRRDKMNDRFLELGTTLEPGKPVKSDKAAILSDATRMVIQLRAEAKQLKDTN 144
+ KA REK+RRDK+ ++FLELG L+P +P KSDKA++L+D +M+ + + +LK
Sbjct: 47 SQKAEREKLRRDKLKEQFLELGNALDPNRP-KSDKASVLTDTIQMLKDVMNQVDRLKAEY 105
Query: 145 ESLEDKIKELKAEKDELRDEKQKLKVEKETL--EQQVKILTATPAYMPH 191
E+L + +EL EK ELR+EK LK + E L + Q +I T P ++PH
Sbjct: 106 ETLSQESRELIQEKSELREEKATLKSDIEILNAQYQHRIKTMVP-WVPH 153
>AT3G47640.1 | chr3:17568035-17569101 FORWARD LENGTH=241
Length = 240
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 82/162 (50%), Gaps = 13/162 (8%)
Query: 72 SNKRVRSGSCGRPTSKASREKIRRDKMNDRFLELGTTLEPGKPVKSDKAAILSDATRMVI 131
+++R R G + +KA RE+++R+ +N+ F+EL TLE + S KA+IL +ATR +
Sbjct: 17 ADERCRKGKVPKRINKAVRERLKREHLNELFIELADTLELNQQ-NSGKASILCEATRFLK 75
Query: 132 QLRAEAKQLKDTNESLEDKIKELKAEKDELRDEKQKLKVEKETLEQQVKILTATPAYMPH 191
+ + + L+ + SL + + EK+EL++E L+ E L+ +++ A
Sbjct: 76 DVFGQIESLRKEHASLLSESSYVTTEKNELKEETSVLETEISKLQNEIE----ARANQSK 131
Query: 192 PTLMPAPYPQAPLAPFHHAQGQAAGQKLMMPFVGYPGYPMWQ 233
P L +P P+ + + Q +PG P++Q
Sbjct: 132 PDLNTSPAPEYHHHHYQQQHPERVSQ--------FPGLPIFQ 165
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.129 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,494,700
Number of extensions: 235429
Number of successful extensions: 2118
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2116
Number of HSP's successfully gapped: 9
Length of query: 253
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 157
Effective length of database: 8,474,633
Effective search space: 1330517381
Effective search space used: 1330517381
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 110 (47.0 bits)