BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0601700 Os11g0601700|AK068017
(278 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G47640.1 | chr3:17568035-17569101 FORWARD LENGTH=241 114 5e-26
AT3G19860.2 | chr3:6903842-6905863 FORWARD LENGTH=338 81 5e-16
AT4G36060.1 | chr4:17055397-17056567 FORWARD LENGTH=287 73 1e-13
AT3G23210.1 | chr3:8283255-8284915 REVERSE LENGTH=321 65 3e-11
AT4G14410.1 | chr4:8300077-8301503 FORWARD LENGTH=284 60 1e-09
AT5G54680.1 | chr5:22217270-22218993 FORWARD LENGTH=235 57 1e-08
AT1G51070.2 | chr1:18928018-18929513 FORWARD LENGTH=293 52 3e-07
>AT3G47640.1 | chr3:17568035-17569101 FORWARD LENGTH=241
Length = 240
Score = 114 bits (285), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 90/121 (74%), Gaps = 2/121 (1%)
Query: 26 NAASDKAVDGSLDKRSQE-KAPKKTHKAEREKLKRDQLNDLFVELSSMLDPERQNSGKAT 84
+ +SD+A + + D+R ++ K PK+ +KA RE+LKR+ LN+LF+EL+ L+ +QNSGKA+
Sbjct: 7 STSSDEA-NATADERCRKGKVPKRINKAVRERLKREHLNELFIELADTLELNQQNSGKAS 65
Query: 85 VLGDAARVLRDLVSQVESLRKEQSALLTERQYVGSENNELQEENIMLRAQILELHNEICA 144
+L +A R L+D+ Q+ESLRKE ++LL+E YV +E NEL+EE +L +I +L NEI A
Sbjct: 66 ILCEATRFLKDVFGQIESLRKEHASLLSESSYVTTEKNELKEETSVLETEISKLQNEIEA 125
Query: 145 R 145
R
Sbjct: 126 R 126
>AT3G19860.2 | chr3:6903842-6905863 FORWARD LENGTH=338
Length = 337
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 63/89 (70%)
Query: 47 KKTHKAEREKLKRDQLNDLFVELSSMLDPERQNSGKATVLGDAARVLRDLVSQVESLRKE 106
+K+ KA REKL+R++LN+ FVEL ++LDPER + KAT+L D ++L++L S+V L+ E
Sbjct: 59 RKSQKAGREKLRREKLNEHFVELGNVLDPERPKNDKATILTDTVQLLKELTSEVNKLKSE 118
Query: 107 QSALLTERQYVGSENNELQEENIMLRAQI 135
+AL E + + E N+L+EE L++ I
Sbjct: 119 YTALTDESRELTQEKNDLREEKTSLKSDI 147
>AT4G36060.1 | chr4:17055397-17056567 FORWARD LENGTH=287
Length = 286
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 59/87 (67%)
Query: 49 THKAEREKLKRDQLNDLFVELSSMLDPERQNSGKATVLGDAARVLRDLVSQVESLRKEQS 108
+ KAEREKL+RD+L + F+EL + LDP R S KA+VL D ++L+D+++QV+ L+ E
Sbjct: 47 SQKAEREKLRRDKLKEQFLELGNALDPNRPKSDKASVLTDTIQMLKDVMNQVDRLKAEYE 106
Query: 109 ALLTERQYVGSENNELQEENIMLRAQI 135
L E + + E +EL+EE L++ I
Sbjct: 107 TLSQESRELIQEKSELREEKATLKSDI 133
>AT3G23210.1 | chr3:8283255-8284915 REVERSE LENGTH=321
Length = 320
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
Query: 39 KRSQEKAPKKTHKAEREKLKRDQLNDLFVELSSMLDPERQ-NSGKATVLGDAARVLRDLV 97
+R K KA REKL+R++LND F++LSS+L+P R + K+ +L DA RV+ L
Sbjct: 155 RRRTGSCSKPGTKACREKLRREKLNDKFMDLSSVLEPGRTPKTDKSAILDDAIRVVNQLR 214
Query: 98 SQVESLRKEQSALLTERQYVGSENNELQEENIMLRAQ 134
+ L++ LL E + + ++ NEL+EE ++L+A+
Sbjct: 215 GEAHELQETNQKLLEEIKSLKADKNELREEKLVLKAE 251
>AT4G14410.1 | chr4:8300077-8301503 FORWARD LENGTH=284
Length = 283
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 51 KAEREKLKRDQLNDLFVELSSMLDPERQ-NSGKATVLGDAARVLRDLVSQVESLRKEQSA 109
KA RE+L+R++LN+ F++LSS+L+P R + K +L DA R+L L + L +
Sbjct: 135 KACRERLRREKLNERFMDLSSVLEPGRTPKTDKPAILDDAIRILNQLRDEALKLEETNQK 194
Query: 110 LLTERQYVGSENNELQEENIMLRA 133
LL E + + +E NEL+EE ++L+A
Sbjct: 195 LLEEIKSLKAEKNELREEKLVLKA 218
>AT5G54680.1 | chr5:22217270-22218993 FORWARD LENGTH=235
Length = 234
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 35 GSLDKRSQEKAPKKTHKAEREKLKRDQLNDLFVELSSMLDP-ERQNSGKATVLGDAARVL 93
GS + E + + KA REK +RD+LND F+EL ++L+P + KA +L DA R++
Sbjct: 60 GSKKRGRCESSSATSSKACREKQRRDRLNDKFMELGAILEPGNPPKTDKAAILVDAVRMV 119
Query: 94 RDLVSQVESLRKEQSALLTERQYVGSENNELQEENIMLRAQILELHNEICA 144
L + + L+ S+L + + + +E NEL++E L+ + +L ++ A
Sbjct: 120 TQLRGEAQKLKDSNSSLQDKIKELKTEKNELRDEKQRLKTEKEKLEQQLKA 170
>AT1G51070.2 | chr1:18928018-18929513 FORWARD LENGTH=293
Length = 292
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 51 KAEREKLKRDQLNDLFVELSSMLDPERQ-NSGKATVLGDAARVLRDLVSQVESLRKEQSA 109
KA REK +RD+LND F ELSS+L+P R + K ++ DA R++ + + L+ S+
Sbjct: 137 KACREKQRRDRLNDKFTELSSVLEPGRTPKTDKVAIINDAIRMVNQARDEAQKLKDLNSS 196
Query: 110 LLTERQYVGSENNELQEENIMLRAQ 134
L + + + E NEL++E L+ +
Sbjct: 197 LQEKIKELKDEKNELRDEKQKLKVE 221
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.308 0.123 0.338
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,859,707
Number of extensions: 185936
Number of successful extensions: 745
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 746
Number of HSP's successfully gapped: 7
Length of query: 278
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 181
Effective length of database: 8,447,217
Effective search space: 1528946277
Effective search space used: 1528946277
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 111 (47.4 bits)