BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0109000 Os08g0109000|AK107316
(401 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0109000 ENTH/VHS domain containing protein 687 0.0
Os02g0273700 VHS domain containing protein 176 2e-44
Os01g0229200 VHS domain containing protein 176 2e-44
Os11g0199700 Similar to Seed protein B32E (Fragment) 174 7e-44
Os06g0332400 VHS domain containing protein 163 2e-40
Os05g0475300 VHS domain containing protein 148 6e-36
Os01g0825700 Similar to VHS2 protein (Fragment) 139 4e-33
Os05g0339000 VHS domain containing protein 77 2e-14
Os02g0697300 ENTH/VHS domain containing protein 74 2e-13
>Os08g0109000 ENTH/VHS domain containing protein
Length = 401
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/401 (85%), Positives = 344/401 (85%)
Query: 1 MASEMVKAATSEKLKEMDWAKNIEICELVAQDPGKAKDVIKPIKKYLGSRSKNTQLYAVM 60
MASEMVKAATSEKLKEMDWAKNIEICELVAQDPGKAKDVIKPIKKYLGSRSKNTQLYAVM
Sbjct: 1 MASEMVKAATSEKLKEMDWAKNIEICELVAQDPGKAKDVIKPIKKYLGSRSKNTQLYAVM 60
Query: 61 LLEMLMNNCGEPIHKQVIDNGXXXXXXXXXXXXTELPVREKIFLLLDATQTSLGGVKGKF 120
LLEMLMNNCGEPIHKQVIDNG TELPVREKIFLLLDATQTSLGGVKGKF
Sbjct: 61 LLEMLMNNCGEPIHKQVIDNGLLPILVKIVKKKTELPVREKIFLLLDATQTSLGGVKGKF 120
Query: 121 PQYYGAYYELVSAGVQFSNRXXXXXXXXXXXXXXXXXXIEPNNNSLSRRLDEGQKEVHAQ 180
PQYYGAYYELVSAGVQFSNR IEPNNNSLSRRLDEGQKEVHAQ
Sbjct: 121 PQYYGAYYELVSAGVQFSNRPNVVVTQAQAPVPVPEPTIEPNNNSLSRRLDEGQKEVHAQ 180
Query: 181 PVSESSIIRKASSVMEVLKDVLDSMDPRHPEGATDEFVLDLVEQCTFQKQRIMHLVMTSR 240
PVSESSIIRKASSVMEVLKDVLDSMDPRHPEGATDEFVLDLVEQCTFQKQRIMHLVMTSR
Sbjct: 181 PVSESSIIRKASSVMEVLKDVLDSMDPRHPEGATDEFVLDLVEQCTFQKQRIMHLVMTSR 240
Query: 241 DEVVVSQAIELNEELHKVLVRHDALLSVQPTTTVASTLKXXXXXDAESLYRRLRKGKALS 300
DEVVVSQAIELNEELHKVLVRHDALLSVQPTTTVASTLK DAESLYRRLRKGKALS
Sbjct: 241 DEVVVSQAIELNEELHKVLVRHDALLSVQPTTTVASTLKEEEEEDAESLYRRLRKGKALS 300
Query: 301 EDYTDDSIPSFRSIPEDKMRRPLTIEPSNTDKKLGALNIRSPYPEARPDVLIPPPPAKHA 360
EDYTDDSIPSFRSIPEDKMRRPLTIEPSNTDKKLGALNIRSPYPEARPDVLIPPPPAKHA
Sbjct: 301 EDYTDDSIPSFRSIPEDKMRRPLTIEPSNTDKKLGALNIRSPYPEARPDVLIPPPPAKHA 360
Query: 361 ERERFFREKSMDANXXXXXXXXXXXXXXXXXXXXXXTDYGD 401
ERERFFREKSMDAN TDYGD
Sbjct: 361 ERERFFREKSMDANLLGHLRGLSLHSRDGSSSCSGSTDYGD 401
>Os02g0273700 VHS domain containing protein
Length = 634
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/270 (36%), Positives = 150/270 (55%), Gaps = 12/270 (4%)
Query: 1 MASEMVKAATSEKLKEMDWAKNIEICELVAQDPGKAKDVIKPIKKYLGSRSKNTQLYAVM 60
M S +V AT++ L DWA N+EIC+ + +DPG+AKDV+K IKK + R+ QL A+
Sbjct: 1 MPSVLVDRATNDMLIGPDWAMNLEICDTLNRDPGQAKDVVKSIKKRIAHRNAKVQLLALT 60
Query: 61 LLEMLMNNCGEPIHKQVIDNGXXXXXXXXXXXXTELPVREKIFLLLDATQTSLGGVKGKF 120
LLE ++ NCG+ +H QV + + V+EKI L+D Q GGV+ ++
Sbjct: 61 LLETMIKNCGDIVHMQVAEKDILHEMVKIVKKRPDFHVKEKILTLIDTWQEVFGGVRARY 120
Query: 121 PQYYGAYYELVSAGVQFSNRXXXXXXXXXXXXXXXXXXIEPNNNSLSRRLDEGQKE---- 176
PQYY AY EL+ AG F R +P N L Q+E
Sbjct: 121 PQYYAAYQELLRAGAVFPQR------SNGSVPIFTPPQTQPLQN-YPASLRSAQQEPPGS 173
Query: 177 -VHAQPVSESSIIRKASSVMEVLKDVLDSMDPRHPEGATDEFVLDLVEQCTFQKQRIMHL 235
V P + I+ A +M+VL ++L+++DP + EG E ++DLV+QC KQR++ L
Sbjct: 174 SVPDLPSLSLAEIQNARGIMDVLSEMLNALDPSNREGLRQEVIVDLVDQCRSYKQRVVEL 233
Query: 236 VMTSRDEVVVSQAIELNEELHKVLVRHDAL 265
V T+ +E ++SQ + LN++L +VL +HDA+
Sbjct: 234 VNTTSNEELLSQGLSLNDDLQRVLAKHDAI 263
>Os01g0229200 VHS domain containing protein
Length = 711
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 92/266 (34%), Positives = 148/266 (55%), Gaps = 7/266 (2%)
Query: 1 MASEMVKAATSEKLKEMDWAKNIEICELVAQDPGKAKDVIKPIKKYLGSRSKNTQLYAVM 60
MA MV ATS+ L DWAKN+EIC++ +DPG++KDV+K +KK +G ++ Q+ A+
Sbjct: 1 MAGSMVDRATSDMLIGPDWAKNMEICDICNRDPGQSKDVVKALKKRIGHKNPKVQILALT 60
Query: 61 LLEMLMNNCGEPIHKQVIDNGXXXXXXXXXXXXTELPVREKIFLLLDATQTSLGGVKGKF 120
LLE + NCG+ H V + ++ V+EK+ ++D Q + GG + ++
Sbjct: 61 LLETAIKNCGDIFHMHVAERDVLHEMVKIVKKKSDQNVKEKVLTMIDTWQEAFGGPRARY 120
Query: 121 PQYYGAYYELVSAGVQFSNRXXXXXXXXXXXXXXXXXXIEPNNNSLSRRLDEGQKEVHAQ 180
PQYY AY++LV AG F R P+ + DE +
Sbjct: 121 PQYYAAYHDLVRAGAAFPKRSDRPAPLFNGQSPAGRNMRSPD------QQDEAESSAGND 174
Query: 181 -PVSESSIIRKASSVMEVLKDVLDSMDPRHPEGATDEFVLDLVEQCTFQKQRIMHLVMTS 239
P S I+ A +M+VL ++L+++DP + EG E +++LV+QC KQR++ LV +
Sbjct: 175 FPALSMSEIQNARGIMDVLAEMLNALDPGNREGLRQEVIVELVDQCRTYKQRVVLLVNAT 234
Query: 240 RDEVVVSQAIELNEELHKVLVRHDAL 265
DE ++SQ + LN++L +VL +HDA+
Sbjct: 235 ADEELMSQGLALNDDLQRVLAKHDAI 260
>Os11g0199700 Similar to Seed protein B32E (Fragment)
Length = 588
Score = 174 bits (442), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 97/270 (35%), Positives = 148/270 (54%), Gaps = 7/270 (2%)
Query: 1 MASEMVKA--ATSEKLKEMDWAKNIEICELVAQDPGKAKDVIKPIKKYLGSRSKNTQLYA 58
MA+ + A ATS+ L DWA NIE+C+++ DPG+AKD +K +KK LG+++ Q+
Sbjct: 1 MATAVACAERATSDMLIGPDWAVNIELCDIINMDPGQAKDTLKLLKKRLGNKNSKVQILT 60
Query: 59 VMLLEMLMNNCGEPIHKQVIDNGXXXXXXXXXXXXTELPVREKIFLLLDATQTSLGGVKG 118
+ +LE L NCG+ +++Q+I+ +L VREKI L+D Q + GG G
Sbjct: 61 LYVLETLSKNCGDVVYQQIIERDILSEMVKIVKKKPDLNVREKILSLIDTWQVAFGGASG 120
Query: 119 KFPQYYGAYYELVSAGVQFSNRXXXXX---XXXXXXXXXXXXXIEPNNNSLSRRLDEG-- 173
++PQY+ AY EL +AGV F R P S +
Sbjct: 121 RYPQYHAAYQELRNAGVDFPPREENTVPLFTPPQTQPLRQPHLYPPPGQSYEDAAIQASL 180
Query: 174 QKEVHAQPVSESSIIRKASSVMEVLKDVLDSMDPRHPEGATDEFVLDLVEQCTFQKQRIM 233
Q + P S I+ A +++VL ++L+++D RHPEG +E ++DLV QC + R+M
Sbjct: 181 QSSAPSAPALSLSEIQSARGIVDVLDEMLNALDHRHPEGVREEVIVDLVGQCRSYQGRVM 240
Query: 234 HLVMTSRDEVVVSQAIELNEELHKVLVRHD 263
LV + DE ++ QA+ LN+EL +VL RHD
Sbjct: 241 DLVSNTGDESLLFQALGLNDELQRVLQRHD 270
>Os06g0332400 VHS domain containing protein
Length = 683
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 149/264 (56%), Gaps = 1/264 (0%)
Query: 3 SEMVKAATSEKLKEMDWAKNIEICELVAQDPGKAKDVIKPIKKYLGSRSKNTQLYAVMLL 62
S +V ATSE L DW+ N+EIC+++ DP +AKDV+K IKK +G ++ QL A+ LL
Sbjct: 4 SVLVDRATSESLIGPDWSLNLEICDILNHDPSQAKDVVKSIKKRIGHKNSKIQLLALTLL 63
Query: 63 EMLMNNCGEPIHKQVIDNGXXXXXXXXXXXXTELPVREKIFLLLDATQTSLGGVKGKFPQ 122
E L+ NCG+ +H V + + V+EKI +L+D Q + GG + ++PQ
Sbjct: 64 ETLIKNCGDFVHMHVAERDILHEMVKIAKKKPDYHVKEKILILIDTWQEAFGGSRARYPQ 123
Query: 123 YYGAYYELVSAGVQFSNRXXXXXXXXXXXXXXXXXXIEPNNNSLSRRLDEGQKEVHAQ-P 181
YY AY EL+ AG F R + P + R+ + + + P
Sbjct: 124 YYVAYQELLRAGAVFPQRPDSSVPIYTPPQTQPLRNLPPALRNTERQQEAPESSSTPEVP 183
Query: 182 VSESSIIRKASSVMEVLKDVLDSMDPRHPEGATDEFVLDLVEQCTFQKQRIMHLVMTSRD 241
+ I+ A VM+VL ++L+++DP + EG E ++DLV+QC KQR++ LV ++ D
Sbjct: 184 TLSLTEIQNARGVMDVLSEMLNAIDPGNREGLRQEVIVDLVDQCRSYKQRVVQLVNSTTD 243
Query: 242 EVVVSQAIELNEELHKVLVRHDAL 265
E ++SQ + LN++L +VL +HDA+
Sbjct: 244 EELLSQGLSLNDDLQRVLAKHDAI 267
>Os05g0475300 VHS domain containing protein
Length = 625
Score = 148 bits (374), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 140/272 (51%), Gaps = 9/272 (3%)
Query: 2 ASEMVKAATSEKLKEMDWAKNIEICELVAQDPGKAKDVIKPIKKYLGSRSKNTQLYAVML 61
AS V ATS L+ DWA N+EIC+ + D + KDV+K +KK L + Q + + L
Sbjct: 15 ASTRVDKATSHLLQGPDWAINLEICDTLNADRWQTKDVVKAVKKRLQHKDPRVQFFTLTL 74
Query: 62 LEMLMNNCGEPIHKQVIDNGXXXXXXXXXXXXTELPVREKIFLLLDATQTSLGGVKGKFP 121
LE +M NCGE +H +V++ + VR+K+ +LLD+ Q + GG GK+P
Sbjct: 75 LETMMKNCGEYVHFEVVEQHILQEMVRIVQKKHDTQVRDKVLILLDSWQEAFGGPGGKYP 134
Query: 122 QYYGAYYELVSAGVQFSNRXXXXXXXXXXXXXXXXXXI-EPN--NNSLSRRLDEGQKEVH 178
QYY +Y EL +G+ F R P SL+ R+ +V
Sbjct: 135 QYYWSYIELKRSGIMFPRRPVDAPPIFTPPATHHTQSYGSPTYPAGSLNERMT---SDVE 191
Query: 179 AQPVSESSIIRKASSVMEVLKDVLDSMDPRHPEGATDEFVLDLVEQCTFQKQRIMHLVMT 238
+ + + IR + E+L D++++++P DE + +LV QC +Q++M V +
Sbjct: 192 TLSLGDLNNIRDTT---ELLCDMVNALNPSDRMAVKDEIISELVTQCRSNQQKLMRFVSS 248
Query: 239 SRDEVVVSQAIELNEELHKVLVRHDALLSVQP 270
+ +E ++ Q +E+N+ L VL +HDA+ S P
Sbjct: 249 TGNEELLKQGLEINDHLQSVLAKHDAIASGAP 280
>Os01g0825700 Similar to VHS2 protein (Fragment)
Length = 597
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 133/265 (50%), Gaps = 9/265 (3%)
Query: 6 VKAATSEKLKEMDWAKNIEICELVAQDPGKAKDVIKPIKKYLGSRSKNTQLYAVMLLEML 65
V+ ATS L DWA N+EIC+++ D + KDV+K +KK L ++ Q YA+ LLE +
Sbjct: 22 VEKATSHLLMGPDWAVNLEICDIINADVWQTKDVVKAVKKRLQNKDPKVQFYALTLLETM 81
Query: 66 MNNCGEPIHKQVIDNGXXXXXXXXXXXXTELPVREKIFLLLDATQTSLGGVKGKFPQYYG 125
M NCGE + +V + ++ VR+KI LLLD+ Q + GG K+PQY+
Sbjct: 82 MKNCGEYVQLEVAEQHVLQEMVKIIQKKNDMLVRDKILLLLDSWQEAFGGPGSKYPQYHF 141
Query: 126 AYYELVSAGVQFSNRXXXXXXXXXXXXXXXXXXIEPNNNSLSRRLDEGQ-KEVHAQPVSE 184
AY E+ G F R S R + G E+ + V
Sbjct: 142 AYLEVKRIGAVFPRRPIDAPPIFTPPATHTSQSYG------SPRYEAGSLNEIMSSDVET 195
Query: 185 SSI--IRKASSVMEVLKDVLDSMDPRHPEGATDEFVLDLVEQCTFQKQRIMHLVMTSRDE 242
S+ + +V E+L D++ +++P DE + DLV QC +Q++M V ++ +E
Sbjct: 196 LSLGDLNNIRNVTELLCDMVHALNPSDHMAVKDEIITDLVSQCRSNQQKLMQFVSSTGNE 255
Query: 243 VVVSQAIELNEELHKVLVRHDALLS 267
++ Q +E+N+ L ++ ++D + S
Sbjct: 256 QLLKQGLEINDRLQNIISKYDIMAS 280
>Os05g0339000 VHS domain containing protein
Length = 136
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
Query: 1 MASEMVKA--ATSEKLKEMDWAKNIEICELVAQDPGKAKDVIKPIKKYLGSRSKNTQLYA 58
MA+ V+ ATSE L DW NI+IC+ V D G+AK+VIK +KK L ++ Q +A
Sbjct: 1 MAAAAVRVDKATSELLLGPDWTLNIDICDAVNSDHGQAKEVIKALKKRLQHKNSKVQFFA 60
Query: 59 VMLLEMLMNNCGEPIHKQVID 79
+ LLE LM NCG+ +H QV++
Sbjct: 61 LTLLETLMKNCGDHVHSQVVE 81
>Os02g0697300 ENTH/VHS domain containing protein
Length = 392
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 122/266 (45%), Gaps = 8/266 (3%)
Query: 2 ASEMVKAATSEKLKEMDWAKNIEICELVAQDPGKAKDVIKPIKKYLGSRSKNTQLYAVML 61
A ++V+ ATSE L DW+ N+EIC+L+ + + ++I+ IKK + + Q +++L
Sbjct: 48 ADKIVEEATSENLDGPDWSANLEICDLINTEKVNSVELIRGIKKRIMLKDARVQYLSLVL 107
Query: 62 LEMLMNNCGEPIHKQVIDNGXXXXXXXXXXXXTELPVREKIFLLLDATQTSLGGVKGKFP 121
LE ++ NC + + + T + R K +L++A S G P
Sbjct: 108 LETIVKNCEKAFSEVAAERVLDEMVRLIDDPQTVVNNRNKALMLIEAWGES-GDELRYLP 166
Query: 122 QYYGAYYELVSAGVQFSNRXXXXXXXXXXXXXXXXXXIEPNNNSLSRRLDEGQKEVHAQP 181
Y Y L S GV+F R E + N + ++ Q VH
Sbjct: 167 VYEETYKSLKSRGVRFPGRDNESLAPIFTPARSVAEA-EVDANFSQQTFEDVQ--VHTYT 223
Query: 182 VSES-SIIRKASSVMEVLKDVLDSMDPRHPEGATDEFVLDLVEQCTFQKQRIMHLVMTSR 240
E+ A + +E+L VL S P+ + D+ LV+QC + I ++ T+
Sbjct: 224 AEETKEAFDVARNSIELLSTVLSS-SPQQ-DALQDDLTSTLVQQCYQSQHTIQRMIETAG 281
Query: 241 D-EVVVSQAIELNEELHKVLVRHDAL 265
D E ++ +A+ +N+E+ KVL +++ +
Sbjct: 282 DNEAMLFEALSVNDEIQKVLSKYEQM 307
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.131 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,242,123
Number of extensions: 431566
Number of successful extensions: 1201
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 1193
Number of HSP's successfully gapped: 10
Length of query: 401
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 298
Effective length of database: 11,657,759
Effective search space: 3474012182
Effective search space used: 3474012182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)