Os01g0229200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : VHS domain containing protein.
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Os01g0229200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : VHS domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.41 | 0.212 | 11.4 | 0.381 | 0.94 | -0.492 | 0.377 | 2.12 | 0.315 | 2.06 | 25.2 | 23 | -- | -- |
| 21.88 | 0.22 | 11.4 | 0.136 | 0.964 | -0.312 | 0.0973 | -- | 0.252 | 2.11 | 25 | 56 | -- | -- |
| 20.87 | 0.213 | 11.4 | 0.331 | 0.95 | -0.46 | -- | 1.76 | 0.297 | 2.07 | 25.31 | 23 | -- | -- |
| 21.87 | 0.219 | 11.4 | 0.138 | 0.957 | -0.32 | -- | -- | 0.263 | 2.12 | 24.2 | 31 | -- | -- |
| 53.65 | 0.341 | 11.4 | 0.615 | -- | -1.4 | -- | 2.39 | 0.471 | -- | 24.27 | 12 | -- | -- |
| 23.35 | 0.227 | 11.4 | 0.0922 | 1.08 | -- | 0.175 | -- | 0.227 | 2.18 | -- | -- | -- | -- |
| 23.47 | 0.227 | 11.4 | 0.0871 | 1.08 | -- | -- | -- | 0.226 | 2.2 | -- | -- | -- | -- |
| 56.54 | 0.35 | 11.4 | 0.318 | -- | -1.22 | -- | -- | 0.388 | -- | 24.1 | 9 | -- | -- |
| 22.33 | 0.22 | 11.4 | -- | 0.963 | -0.298 | -- | -- | 0.245 | 2.13 | 24.47 | 12 | -- | -- |
| 93.43 | 0.452 | 11.4 | 0.133 | -- | -- | -- | -- | 0.252 | -- | -- | -- | -- | -- |
| 23.67 | 0.228 | 11.4 | -- | 1.08 | -- | -- | -- | 0.216 | 2.2 | -- | -- | -- | -- |
| 59.06 | 0.358 | 11.4 | -- | -- | -1.17 | -- | -- | 0.344 | -- | 24.2 | 9 | -- | -- |
| 93.89 | 0.452 | 11.4 | -- | -- | -- | -- | -- | 0.237 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.75 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 11 | 17.36 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 3 |
| 16 | 17.47 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 9 |
| 23 | 17.56 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 6 |
| 32 | 17.65 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 165 | 18.52 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 14 |
| 180 | 18.59 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 198 | 18.65 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 242 | 18.76 | radiation | 1 | 720 | < th | dose dependent | rect. | 24 | 9 |
| 303 | 18.93 | radiation | 1 | 720 | < th | dose dependent | sin | 9 | NA |
| 335 | 19.01 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 11 |
| 500 | 19.31 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 14 |
| 558 | 19.41 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 8 |
| 561 | 19.42 | temperature | 20 | 720 | < th | dose independent | sin | 5 | NA |
| 635 | 19.51 | temperature | 20 | 720 | > th | dose independent | sin | 4 | NA |
| 734 | 19.62 | temperature | 25 | 270 | < th | dose independent | rect. | 10 | 1 |
| 786 | 19.67 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 4 |
| 865 | 19.76 | radiation | 1 | 720 | < th | dose dependent | rect. | 18 | 15 |
| 867 | 19.76 | radiation | 1 | 720 | < th | dose dependent | rect. | 18 | 17 |
| 909 | 19.81 | radiation | 1 | 720 | < th | dose independent | rect. | 24 | 9 |
| 941 | 19.85 | radiation | 1 | 720 | < th | dose independent | rect. | 24 | 11 |