BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0229200 Os01g0229200|AK066024
(711 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G32760.2 | chr4:15799376-15803832 FORWARD LENGTH=677 402 e-112
AT3G08790.1 | chr3:2667881-2671001 FORWARD LENGTH=608 325 5e-89
AT1G21380.1 | chr1:7485806-7488032 REVERSE LENGTH=507 280 2e-75
AT1G76970.1 | chr1:28922841-28924854 REVERSE LENGTH=447 273 3e-73
AT2G38410.1 | chr2:16086912-16090047 REVERSE LENGTH=672 234 1e-61
AT5G01760.1 | chr5:291753-294127 FORWARD LENGTH=543 220 3e-57
AT5G63640.1 | chr5:25478935-25481221 FORWARD LENGTH=448 183 3e-46
AT5G16880.1 | chr5:5549658-5551274 FORWARD LENGTH=408 112 5e-25
AT1G06210.1 | chr1:1897567-1898986 FORWARD LENGTH=384 92 8e-19
>AT4G32760.2 | chr4:15799376-15803832 FORWARD LENGTH=677
Length = 676
Score = 402 bits (1034), Expect = e-112, Method: Compositional matrix adjust.
Identities = 247/525 (47%), Positives = 313/525 (59%), Gaps = 56/525 (10%)
Query: 1 MAGSMVDRATSDMLIGPDWAKNMEICDICNRDPGQSKDVVKALKKRIGHKNPKVQILALT 60
M +MV+RATS+MLIGPDWA N+EICD+ N DP Q+KDVVK +KKRIG +NPK Q+LALT
Sbjct: 1 MVNAMVERATSEMLIGPDWAMNLEICDMLNSDPAQAKDVVKGIKKRIGSRNPKAQLLALT 60
Query: 61 LLETAIKNCGDIFHMHVAERDVLHEMVKIVKKKSDQNVKEKVLTMIDTWQEAFGGXXXXX 120
LLET +KNCGD+ HMHVAE+ V+HEMV+IVKKK D +VKEK+L +IDTWQEAFGG
Sbjct: 61 LLETIVKNCGDMVHMHVAEKGVIHEMVRIVKKKPDFHVKEKILVLIDTWQEAFGGPRARY 120
Query: 121 XXXXXXXHDLVRAGAAFPKRSDRPAPLFNGQSPAGRNMRSPDQQ------DEAESSAGND 174
+L+RAGA FP+RS+R AP+F P+ + D E SA +
Sbjct: 121 PQYYAGYQELLRAGAVFPQRSERSAPVFTPPQTQPLTSYPPNLRNAGPGNDVPEPSAEPE 180
Query: 175 FPALSMSEIQNARGIMDVLAEMLNALDPGNREGLRQEVIVELVDQCRTYKQRVVLLVNAT 234
FP LS+SEIQNA+GIMDVLAEML+AL+PGN+E L+QEV+V+LV+QCRTYKQRVV LVN+T
Sbjct: 181 FPTLSLSEIQNAKGIMDVLAEMLSALEPGNKEDLKQEVMVDLVEQCRTYKQRVVHLVNST 240
Query: 235 ADEELMSQGLALNDDLQRVLAKHDAIAAGI---AVRVEK-KPKSLQALVDTEDSMNQDSK 290
+DE L+ QGLALNDDLQRVL ++AIA+G+ + ++EK K ++ ++LVD +
Sbjct: 241 SDESLLCQGLALNDDLQRVLTNYEAIASGLPGTSSQIEKPKSETGKSLVDVDG------- 293
Query: 291 KEQALVDIEDPTTQETNKEPSQSASVQSPFEQLALPAPPVSNGSATPAPKSDLGVDLLSW 350
L+D D + Q S V QLALPAPPV+NGSA + +DLLS
Sbjct: 294 ---PLIDTGDSSNQANGATSSSGNGV---LNQLALPAPPVTNGSA------NSKIDLLSG 341
Query: 351 DDNPSTTENSLALXXXX--XXXXXXXXXQNALAIVDIFSQNNTTNNIAKPADPFGVNSSS 408
DD LAL QNALA++D+FS N TNN + P G N +
Sbjct: 342 DD--------LALVPVGPPQPASPVASDQNALALIDMFSDN--TNNPSPATAPSG-NPAQ 390
Query: 409 TLPGSQPYNAXXXXXXXXXXXXXXVGLYPNGGAV---NPGTSYPTSSGWNGQIANNATPP 465
+P + + G P G P SS W+ Q A P
Sbjct: 391 NIPLNPQGHQQPNSQAGEAGLQQSNGFAPQVGYSQFEQPSYGQGVSSPWSSQPAQQ---P 447
Query: 466 AQQTVNYDEQSGALPPPPWEAQ------SAPSGDMSNGGMQSHPV 504
Q + + S A PPPPWEAQ SA SG + GM HP
Sbjct: 448 VQPSYEGAQDSTAFPPPPWEAQLQDYSPSAESGSPFSPGM--HPT 490
>AT3G08790.1 | chr3:2667881-2671001 FORWARD LENGTH=608
Length = 607
Score = 325 bits (833), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 206/518 (39%), Positives = 279/518 (53%), Gaps = 103/518 (19%)
Query: 1 MAGSMVDRATSDMLIGPDWAKNMEICDICNRDPGQSKDVVKALKKRIGHKNPKVQILALT 60
M +VDRATSDMLIGPDWA N+EICD+ N +PGQ+++VV +KKR+ + KVQ+LALT
Sbjct: 1 MVHPLVDRATSDMLIGPDWAMNLEICDMLNHEPGQTREVVSGIKKRLTSRTSKVQLLALT 60
Query: 61 LLETAIKNCGDIFHMHVAERDVLHEMVKIVKKKSDQNVKEKVLTMIDTWQEAFGGXXXXX 120
LLET I NCG++ HM VAE+D+LH+MVK+ K+K + VKEK+L +IDTWQE+F G
Sbjct: 61 LLETIITNCGELIHMQVAEKDILHKMVKMAKRKPNIQVKEKILILIDTWQESFSGPQGRH 120
Query: 121 XXXXXXXHDLVRAGAAFPKRSD-RPAPLFNGQSPA----GRNMRSPDQQDEAESSAGNDF 175
+L+RAG FP+R P+ NG S RN R Q+ ++S ++F
Sbjct: 121 PQYYAAYQELLRAGIVFPQRPQITPSSGQNGPSTRYPQNSRNAR----QEAIDTSTESEF 176
Query: 176 PALSMSEIQNARGIMDVLAEMLNALDPGNREGLRQEVIVELVDQCRTYKQRVVLLVNATA 235
P LS++EIQNARGIMDVLAEM+NA+D N+EGL+QEV+V+LV QCRTYKQRVV LVN+T+
Sbjct: 177 PTLSLTEIQNARGIMDVLAEMMNAIDGNNKEGLKQEVVVDLVSQCRTYKQRVVHLVNSTS 236
Query: 236 DEELMSQGLALNDDLQRVLAKHDAIAAGIAVRVEKKPKSLQALVDTEDSMNQDSKKEQAL 295
DE ++ QGLALNDDLQR+LAKH+AIA+G ++ +++ + DT +
Sbjct: 237 DESMLCQGLALNDDLQRLLAKHEAIASGNSMIKKEEKSKKEVPKDTTQ-----------I 285
Query: 296 VDIEDPTTQETNKEPSQSASVQSPFEQLALPAPPVSNGSATPAPKSDLGVDLLSWDDNPS 355
+D+ T+ NGS + +DLLS DD +
Sbjct: 286 IDVGSSETK---------------------------NGSVVAYTTNGPKIDLLSGDDFET 318
Query: 356 -TTENSLALXXXXXXXXXXXXXQ--NALAIVDIFSQNNTTNNIAKPADPFGVNSSSTLPG 412
+NSLAL + N++ ++D+ S NN S+ P
Sbjct: 319 PNADNSLALVPLGPPQPSSPVAKPDNSIVLIDMLSDNNC---------------ESSTPT 363
Query: 413 SQPYNAXXXXXXXXXXXXXXVGLYPNGGAVNPGTSYPTSSG-------WNGQIAN----- 460
S P+ Y NG PG + G WN QI
Sbjct: 364 SNPHANHQKVQQN----------YSNG--FGPGHQEQSYYGQGSSAPVWNLQITQQPSSP 411
Query: 461 ---------NATPPAQQTVNYDEQSG---ALPPPPWEA 486
N +PPA + +Y Q+ ALPPPPWEA
Sbjct: 412 AYGNQPFSPNFSPPA--SPHYGGQNNNVLALPPPPWEA 447
>AT1G21380.1 | chr1:7485806-7488032 REVERSE LENGTH=507
Length = 506
Score = 280 bits (716), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 141/268 (52%), Positives = 186/268 (69%), Gaps = 3/268 (1%)
Query: 2 AGSMVDRATSDMLIGPDWAKNMEICDICNRDPGQSKDVVKALKKRIGHKNPKVQILALTL 61
A + +RAT+DMLIGPDWA N+E+CDI N +P Q+K+ VK LKKR+G KN KVQILAL
Sbjct: 5 AAACAERATNDMLIGPDWAINIELCDIINMEPSQAKEAVKVLKKRLGSKNSKVQILALYA 64
Query: 62 LETAIKNCGDIFHMHVAERDVLHEMVKIVKKKSDQNVKEKVLTMIDTWQEAFGGXXXXXX 121
LET KNCG+ + + +RD+L +MVKIVKKK D V+EK+L+++DTWQEAFGG
Sbjct: 65 LETLSKNCGESVYQLIVDRDILPDMVKIVKKKPDLTVREKILSLLDTWQEAFGGSGGRFP 124
Query: 122 XXXXXXHDLVRAGAAFPKRSDRPAPLFN--GQSPAGRNMRSPDQQDEAESSA-GNDFPAL 178
++L AG FP R++ P F P + D+ ++S +D AL
Sbjct: 125 QYYNAYNELRSAGIEFPPRTESSVPFFTPPQTQPIVAQATASDEDAAIQASLQSDDASAL 184
Query: 179 SMSEIQNARGIMDVLAEMLNALDPGNREGLRQEVIVELVDQCRTYKQRVVLLVNATADEE 238
SM EIQ+A+G +DVL +ML ALDP + EGL++E+IV+LV+QCRTY++RV+ LVN T+DEE
Sbjct: 185 SMEEIQSAQGSVDVLTDMLGALDPSHPEGLKEELIVDLVEQCRTYQRRVMALVNTTSDEE 244
Query: 239 LMSQGLALNDDLQRVLAKHDAIAAGIAV 266
LM QGLALND+LQRVL HD A G +V
Sbjct: 245 LMCQGLALNDNLQRVLQHHDDKAKGNSV 272
>AT1G76970.1 | chr1:28922841-28924854 REVERSE LENGTH=447
Length = 446
Score = 273 bits (697), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 139/261 (53%), Positives = 183/261 (70%), Gaps = 7/261 (2%)
Query: 2 AGSMVDRATSDMLIGPDWAKNMEICDICNRDPGQSKDVVKALKKRIGHKNPKVQILALTL 61
A + +RAT+DMLIGPDWA N+E+CD+ N DP Q+K+ VK LKKR+G KN KVQILAL
Sbjct: 5 AAACAERATNDMLIGPDWAINIELCDLINMDPSQAKEAVKVLKKRLGSKNSKVQILALYA 64
Query: 62 LETAIKNCGDIFHMHVAERDVLHEMVKIVKKKSDQNVKEKVLTMIDTWQEAFGGXXXXXX 121
LET KNCG+ + + +R +L++MVKIVKKK + NV+EK+LT++DTWQEAFGG
Sbjct: 65 LETLSKNCGENVYQLIIDRGLLNDMVKIVKKKPELNVREKILTLLDTWQEAFGGRGGRYP 124
Query: 122 XXXXXXHDLVRAGAAFPKRSDRPAPLFNGQSPAGRNMRSPDQQDEAESSA-GNDFPALSM 180
+DL AG FP R++ F +P PD+ ++S G+D +LS+
Sbjct: 125 QYYNAYNDLRSAGIEFPPRTESSLSFF---TPP---QTQPDEDAAIQASLQGDDASSLSL 178
Query: 181 SEIQNARGIMDVLAEMLNALDPGNREGLRQEVIVELVDQCRTYKQRVVLLVNATADEELM 240
EIQ+A G +DVL +ML A DPGN E L++EVIV+LV+QCRTY++RV+ LVN T DEEL+
Sbjct: 179 EEIQSAEGSVDVLMDMLGAHDPGNPESLKEEVIVDLVEQCRTYQRRVMTLVNTTTDEELL 238
Query: 241 SQGLALNDDLQRVLAKHDAIA 261
QGLALND+LQ VL +HD IA
Sbjct: 239 CQGLALNDNLQHVLQRHDDIA 259
>AT2G38410.1 | chr2:16086912-16090047 REVERSE LENGTH=672
Length = 671
Score = 234 bits (598), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 134/325 (41%), Positives = 194/325 (59%), Gaps = 57/325 (17%)
Query: 7 DRATSDMLIGPDWAKNMEICDICNRDPGQSKDVVKALKKRIGHKNPKVQILALTLLETAI 66
D+ATSD+L+GPDW NMEICD N Q+KDVVKA+KKR+ HK+ +VQ+LALTLLET +
Sbjct: 13 DKATSDLLLGPDWTTNMEICDSVNSLHWQAKDVVKAVKKRLQHKSSRVQLLALTLLETLV 72
Query: 67 KNCGDIFHMHVAERDVLHEMVKIVKKKSDQNVKEKVLTMIDTWQEAFGGXXXXXXXXXXX 126
KNCGD H VAE+++L EMVKIVKKK+D V++K+L M+D+WQ+AFGG
Sbjct: 73 KNCGDYLHHQVAEKNILGEMVKIVKKKADMQVRDKILVMVDSWQQAFGGPEGKYPQYYWA 132
Query: 127 XHDLVRAGAAFPKRSDRPAPLFN---------------GQSPAGRNMR------------ 159
+L R+G FP+RS +P+ G PAG +
Sbjct: 133 YDELRRSGVEFPRRSPDASPIITPPVSHPPLRQPQGGYGVPPAGYGVHQAGYGVPQAGYG 192
Query: 160 -------------------------SPDQQDEAESSAGNDFPALSMSEIQNARGIMDVLA 194
S + DEA ++ + LS+S I++ R +MD+L
Sbjct: 193 IPQAGYGVPQAGYGIPQVGYGMPSGSSRRLDEAMAT---EVEGLSLSSIESMRDVMDLLG 249
Query: 195 EMLNALDPGNREGLRQEVIVELVDQCRTYKQRVVLLVNATADEELMSQGLALNDDLQRVL 254
+ML A+DP +RE ++ EVIV+LV++CR+ +++++ ++ +T D+EL+ +GL LND LQ +L
Sbjct: 250 DMLQAVDPSDREAVKDEVIVDLVERCRSNQKKLMQMLTSTGDDELLGRGLDLNDSLQILL 309
Query: 255 AKHDAIAAG--IAVRVEKKPKSLQA 277
AKHDAIA+G + V+ P S+QA
Sbjct: 310 AKHDAIASGSPLPVQASGSPLSVQA 334
>AT5G01760.1 | chr5:291753-294127 FORWARD LENGTH=543
Length = 542
Score = 220 bits (560), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 107/268 (39%), Positives = 174/268 (64%), Gaps = 7/268 (2%)
Query: 6 VDRATSDMLIGPDWAKNMEICDICNRDPGQSKDVVKALKKRIGHKNPKVQILALTLLETA 65
VD+ATS++L PDW + ICD N + Q KD +KA+K+R+ HK+ +VQ+L LTLLE
Sbjct: 26 VDKATSELLRTPDWTIIIAICDSLNSNRWQCKDAIKAVKRRLQHKSSRVQLLTLTLLEAM 85
Query: 66 IKNCGDIFHMHVAERDVLHEMVKIVKKKSDQNVKEKVLTMIDTWQEAFGGXXXXXXXXXX 125
+KNCGD H H+AE+ +L +MVK+V+KK D V+ K+L ++DTW EAF G
Sbjct: 86 LKNCGDFVHSHIAEKHLLEDMVKLVRKKGDFEVRNKLLILLDTWNEAFSGVACKHPHYNW 145
Query: 126 XXHDLVRAGAAFPKRSDR-------PAPLFNGQSPAGRNMRSPDQQDEAESSAGNDFPAL 178
+L R G FP+RS P P+ S + N+ S + + + +L
Sbjct: 146 AYQELKRCGVKFPQRSKEAPLMLEPPPPVTQSSSSSSMNLMSIGSFRRLDETMATEIESL 205
Query: 179 SMSEIQNARGIMDVLAEMLNALDPGNREGLRQEVIVELVDQCRTYKQRVVLLVNATADEE 238
S+S +++ R +MD++ +M+ A++P ++ L+ E+IV+LV+QCR+ +++++ ++ TADE+
Sbjct: 206 SLSSLESMRNVMDLVNDMVQAVNPSDKSALKDELIVDLVEQCRSNQKKLIQMLTTTADED 265
Query: 239 LMSQGLALNDDLQRVLAKHDAIAAGIAV 266
++++GL LND LQ VLA+HDAIA+G+++
Sbjct: 266 VLARGLELNDSLQVVLARHDAIASGVSL 293
>AT5G63640.1 | chr5:25478935-25481221 FORWARD LENGTH=448
Length = 447
Score = 183 bits (464), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 103/273 (37%), Positives = 157/273 (57%), Gaps = 16/273 (5%)
Query: 1 MAGSMVDRATSDMLIGPDWAKNMEICDICNRDPGQSKDVVKALKKRIGHKNPKVQILALT 60
MA +V ATS+ L DWAKN+EIC++ RD Q+KDV+KA+KKR+G KNP Q+ A+
Sbjct: 1 MAAELVSSATSEKLADVDWAKNIEICELAARDERQAKDVIKAIKKRLGSKNPNTQLYAVQ 60
Query: 61 LLETAIKNCGDIFHMHVAERDVLHEMVKIVKKKSDQNVKEKVLTMIDTWQEAFGGXXXXX 120
LLE + N G+ H V + VL +VKIVKKKSD V+E++ ++D Q + GG
Sbjct: 61 LLEMLMNNIGENIHKQVIDTGVLPTLVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKF 120
Query: 121 XXXXXXXHDLVRAGAAFPKRSDRPAPLFNGQSPAGRNMRSPDQQDEAESSAGNDFPALSM 180
++LV AG F +R + P+ RN +E +SA N+ PA +
Sbjct: 121 PQYYTAYYELVNAGVKFTQRPN-ATPVVVTAQAVPRNT-----LNEQLASARNEGPATTQ 174
Query: 181 ----------SEIQNARGIMDVLAEMLNALDPGNREGLRQEVIVELVDQCRTYKQRVVLL 230
S +Q A +++L E+L+A+D N EG + E ++LV+QC K+RV+ L
Sbjct: 175 QRESQSVSPSSILQKASTALEILKEVLDAVDSQNPEGAKDEFTLDLVEQCSFQKERVMHL 234
Query: 231 VNATADEELMSQGLALNDDLQRVLAKHDAIAAG 263
V + DE+ +S+ + LN+ LQR+L +H+ + +G
Sbjct: 235 VMTSRDEKAVSKAIELNEQLQRILNRHEDLLSG 267
>AT5G16880.1 | chr5:5549658-5551274 FORWARD LENGTH=408
Length = 407
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 141/273 (51%), Gaps = 27/273 (9%)
Query: 5 MVDRATSDMLIGPDWAKNMEICDICNRDPGQSKDVVKALKKRIGHKNPKVQILALTLLET 64
+V+ AT++ L PDW N+EICD+ N++ S ++++ +KKRI K P++Q LAL LLET
Sbjct: 51 IVEDATTENLEEPDWDMNLEICDMINQETINSVELIRGIKKRIMMKQPRIQYLALVLLET 110
Query: 65 AIKNCGDIFHMHVAERDVLHEMVKIVKK-KSDQNVKEKVLTMIDTWQEAFGGXXXXXXXX 123
+KNC F AER VL EMVK++ ++ N + K L +I+ W E+
Sbjct: 111 CVKNCEKAFSEVAAER-VLDEMVKLIDDPQTVVNNRNKALMLIEAWGES-TSELRYLPVF 168
Query: 124 XXXXHDLVRAGAAFPKRSDRP-APLFNGQSPAGRNMRSPD------QQDEAESSAGNDFP 176
L G FP R + AP+F +PA R+ +P+ Q + D P
Sbjct: 169 EETYKSLKARGIRFPGRDNESLAPIF---TPA-RSTPAPELNADLPQHVHEPAHIQYDVP 224
Query: 177 ALSMSEIQN------ARGIMDVLAEMLNALDPGNREGLRQEVIVELVDQCR---TYKQRV 227
S + Q AR +++L+ +L++ + L+ ++ LV QCR T QR+
Sbjct: 225 VRSFTAEQTKEAFDIARNSIELLSTVLSS--SPQHDALQDDLTTTLVQQCRQSQTTVQRI 282
Query: 228 VLLVNATADEELMSQGLALNDDLQRVLAKHDAI 260
+ A +E L+ + L +ND+L + L+K++ +
Sbjct: 283 I--ETAGENEALLFEALNVNDELVKTLSKYEEM 313
>AT1G06210.1 | chr1:1897567-1898986 FORWARD LENGTH=384
Length = 383
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 126/272 (46%), Gaps = 18/272 (6%)
Query: 1 MAGSMVDRATSDMLIGPDWAKNMEICDICNRDPGQSKDVVKALKKRIGHKNPKVQILALT 60
+ MVD AT + L P+W NM IC N D ++V+A+K++I K+P Q L+L
Sbjct: 37 LESKMVDEATLETLEEPNWGMNMRICAQINNDEFNGTEIVRAIKRKISGKSPVSQRLSLE 96
Query: 61 LLETAIKNCGDIFHMHVAERDVLHEMVKIVKK-KSDQNVKEKVLTMIDTW---------- 109
LLE NC +F VA VL EMV ++K ++D +++ +I W
Sbjct: 97 LLEACAMNCEKVFS-EVASEKVLDEMVWLIKNGEADSENRKRAFQLIRAWGQSQDLTYLP 155
Query: 110 --QEAFGGXXXXXXXXXXXXHDLVRAGAAFPKRSDRPAPLFN-GQSPAGRNMRSPDQQDE 166
+ + + + ++ RP P+ G P ++ D
Sbjct: 156 VFHQTYMSLEGENGLHARGEENSMPGQSSLESLMQRPVPVPPPGSYPVPNQEQALGDDDG 215
Query: 167 AESSAGNDFPALSMSEIQNARGIMDVLAEMLNALDPGNREGLRQEVIVELVDQCRTYKQR 226
+ + GN +I+ R +++L+ MLN G ++ V L+++C+ +
Sbjct: 216 LDYNFGNLSIKDKKEQIEITRNSLELLSSMLNT--EGKPNHTEDDLTVSLMEKCKQSQPL 273
Query: 227 VVLLVNATADEE-LMSQGLALNDDLQRVLAKH 257
+ +++ +T D+E ++ + L LND+LQ+VL+ +
Sbjct: 274 IQMIIESTTDDEGVLFEALHLNDELQQVLSSY 305
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.128 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 14,540,335
Number of extensions: 616612
Number of successful extensions: 2021
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2011
Number of HSP's successfully gapped: 10
Length of query: 711
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 605
Effective length of database: 8,200,473
Effective search space: 4961286165
Effective search space used: 4961286165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 115 (48.9 bits)