Os05g0475300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : VHS domain containing protein.
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Os05g0475300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : VHS domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.85 | 0.44 | 11.3 | 0.291 | 0.991 | 0.57 | 1.04 | -0.238 | 0.253 | 19.1 | 20.21 | 787 | -- | -- |
| 87.76 | 0.436 | 11.3 | 0.313 | 1.03 | 0.597 | 0.917 | -- | 0.247 | 19.1 | 20.4 | 1076 | -- | -- |
| 90.12 | 0.442 | 11.3 | 0.248 | 1.03 | 0.617 | -- | -0.142 | 0.242 | 19.1 | 20.41 | 1113 | -- | -- |
| 90.15 | 0.442 | 11.3 | 0.278 | 1.03 | 0.632 | -- | -- | 0.247 | 19 | 20.5 | 1091 | -- | -- |
| 138.71 | 0.549 | 11.2 | 0.312 | -- | 0.858 | -- | 0.382 | 0.225 | -- | 20.27 | 563 | -- | -- |
| 97.58 | 0.463 | 11.2 | 0.555 | 1.05 | -- | 1.04 | -- | 0.387 | 19.3 | -- | -- | -- | -- |
| 100.5 | 0.469 | 11.2 | 0.532 | 1.05 | -- | -- | -- | 0.39 | 19.3 | -- | -- | -- | -- |
| 138.99 | 0.549 | 11.2 | 0.24 | -- | 0.799 | -- | -- | 0.211 | -- | 20.47 | 585 | -- | -- |
| 91.5 | 0.446 | 11.3 | -- | 0.996 | 0.792 | -- | -- | 0.208 | 18.9 | 19.4 | 2277 | -- | -- |
| 158.8 | 0.589 | 11.2 | 0.514 | -- | -- | -- | -- | 0.372 | -- | -- | -- | -- | -- |
| 107.97 | 0.486 | 11.3 | -- | 1.04 | -- | -- | -- | 0.33 | 19.3 | -- | -- | -- | -- |
| 140.14 | 0.551 | 11.2 | -- | -- | 0.996 | -- | -- | 0.204 | -- | 19.7 | 531 | -- | -- |
| 165.78 | 0.601 | 11.2 | -- | -- | -- | -- | -- | 0.315 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 79.63 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 3 | 79.92 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 10 | 4 |
| 10 | 80.97 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 17 | 81.77 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 4 |
| 54 | 83.34 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 56 | 83.40 | wind | 1.0 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 80 | 83.92 | wind | 1.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 84 | 83.92 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 115 | 84.18 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 177 | 84.71 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 1 |
| 188 | 84.76 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 5 |
| 219 | 84.97 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 252 | 85.18 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 262 | 85.26 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 14 |
| 264 | 85.30 | temperature | 20.0 | 720 | > th | dose independent | sin | 9 | NA |
| 280 | 85.37 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 3 |
| 357 | 85.60 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 369 | 85.66 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 5 |
| 376 | 85.69 | radiation | 10.0 | 1440 | < th | dose independent | sin | 18 | NA |
| 392 | 85.74 | temperature | 20.0 | 720 | < th | dose independent | rect. | 20 | 11 |
| 413 | 85.79 | radiation | 20.0 | 1440 | < th | dose dependent | sin | 19 | NA |
| 420 | 85.82 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 422 | 85.82 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 442 | 85.93 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 449 | 85.95 | temperature | 20.0 | 720 | < th | dose independent | sin | 11 | NA |
| 505 | 86.11 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 522 | 86.15 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 540 | 86.18 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 578 | 86.31 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 624 | 86.41 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 701 | 86.65 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 829 | 86.87 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 934 | 87.03 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |