Os05g0339000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : VHS domain containing protein.
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Os05g0339000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : VHS domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40 | 0.297 | 9.93 | 0.325 | 0.0622 | -1.34 | 0.421 | 1.11 | 0.231 | 20.6 | 17.9 | 79 | -- | -- |
| 40.79 | 0.3 | 9.95 | 0.118 | 0.0128 | -1.34 | -0.491 | -- | 0.176 | 6.14 | 17.5 | 86 | -- | -- |
| 40.54 | 0.297 | 9.93 | 0.297 | 0.0718 | -1.34 | -- | 1.01 | 0.226 | 20.1 | 18 | 87 | -- | -- |
| 41.34 | 0.301 | 9.95 | 0.117 | 0.0235 | -1.37 | -- | -- | 0.18 | 10.6 | 17.2 | 77 | -- | -- |
| 40.75 | 0.297 | 9.93 | 0.29 | -- | -1.33 | -- | 0.98 | 0.222 | -- | 17.89 | 73 | -- | -- |
| 64.55 | 0.377 | 10 | -0.171 | 0.438 | -- | 0.0431 | -- | -0.038 | 2.45 | -- | -- | -- | -- |
| 64.56 | 0.376 | 10 | -0.172 | 0.439 | -- | -- | -- | -0.0382 | 2.46 | -- | -- | -- | -- |
| 41.37 | 0.301 | 9.95 | 0.114 | -- | -1.36 | -- | -- | 0.178 | -- | 17.2 | 54 | -- | -- |
| 41.67 | 0.302 | 9.95 | -- | 0.0206 | -1.32 | -- | -- | 0.16 | 7.4 | 17.2 | 77 | -- | -- |
| 75.89 | 0.407 | 9.99 | -0.154 | -- | -- | -- | -- | -0.0274 | -- | -- | -- | -- | -- |
| 65.34 | 0.378 | 9.99 | -- | 0.435 | -- | -- | -- | -0.0191 | 2.46 | -- | -- | -- | -- |
| 41.69 | 0.302 | 9.95 | -- | -- | -1.31 | -- | -- | 0.161 | -- | 17.43 | 23 | -- | -- |
| 76.52 | 0.408 | 9.99 | -- | -- | -- | -- | -- | -0.0103 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.38 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 2 | 39.45 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 10 | 40.73 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 11 | 40.77 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 21 | 41.31 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 27 | 41.44 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 37 | 41.80 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 39 | 41.82 | temperature | 20 | 90 | > th | dose dependent | rect. | 24 | 23 |
| 40 | 41.83 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 53 | 41.98 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 56 | 42.06 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 61 | 42.14 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 62 | 42.16 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 69 | 42.29 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 85 | 42.49 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 97 | 42.58 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 109 | 42.65 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 113 | 42.69 | temperature | 20 | 90 | > th | dose dependent | rect. | 10 | 23 |
| 114 | 42.70 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 136 | 42.85 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 157 | 43.07 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 17 |
| 162 | 43.08 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 169 | 43.19 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 23 |
| 172 | 43.24 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 184 | 43.37 | temperature | 20 | 270 | > th | dose dependent | sin | 7 | NA |
| 239 | 43.76 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 276 | 43.97 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 305 | 44.18 | radiation | 10 | 4320 | > th | dose dependent | rect. | 16 | 15 |
| 333 | 44.28 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 341 | 44.32 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 401 | 44.50 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 426 | 44.56 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 447 | 44.60 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 10 |
| 521 | 44.78 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 17 |
| 614 | 44.99 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 738 | 45.22 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 771 | 45.29 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 7 |
| 778 | 45.29 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 17 |
| 797 | 45.33 | temperature | 20 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 800 | 45.34 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 809 | 45.35 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 822 | 45.36 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 847 | 45.39 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 23 |
| 854 | 45.40 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 15 |
| 857 | 45.40 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 938 | 45.47 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 20 |
| 959 | 45.49 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 1 |