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Os08g0109000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : ENTH/VHS domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.4 (0.0157) R2 : 0.000217
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0104 (0.033) R2dN8 : 0.00028 R2N8 : 0.000217
σ : 0.295
deviance : 39.93
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
17.43 0.196 10.4 -0.329 0.323 0.34 0.303 0.349 -0.0394 18.7 19.74 12 -- --
17.83 0.198 10.4 -0.328 0.342 0.279 0.485 -- -0.0465 19.8 21.98 10 -- --
17.63 0.196 10.4 -0.33 0.334 0.314 -- 0.412 -0.0408 19.1 21.03 12 -- --
18.49 0.202 10.4 -0.339 0.333 0.305 -- -- -0.0454 19.4 21.98 10 -- --
22.06 0.22 10.4 -0.356 -- 0.371 -- 0.364 -0.0416 -- 7.1 11 -- --
19.62 0.208 10.4 -0.338 0.527 -- 0.469 -- -0.0472 21.5 -- -- -- --
20.43 0.212 10.4 -0.355 0.525 -- -- -- -0.048 21.5 -- -- -- --
22.86 0.223 10.4 -0.359 -- 0.375 -- -- -0.0342 -- 7.029 7 -- --
21.5 0.217 10.4 -- 0.329 0.327 -- -- -0.00762 19.1 21.98 10 -- --
36.68 0.283 10.4 -0.351 -- -- -- -- -0.0493 -- -- -- -- --
23.75 0.228 10.4 -- 0.525 -- -- -- -0.00843 21.5 -- -- -- --
26.3 0.239 10.4 -- -- 0.367 -- -- 0.00381 -- 6.35 6 -- --
39.93 0.295 10.4 -- -- -- -- -- -0.0104 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 16.01 temperature 20.0 30 > th dose dependent rect. 5 9
13 16.30 temperature 20.0 10 > th dose dependent rect. 5 11
14 16.33 radiation 20.0 30 < th dose dependent rect. 22 22
23 16.44 radiation 1.0 90 < th dose independent rect. 3 16
24 16.44 radiation 20.0 90 < th dose dependent rect. 23 20
32 16.50 atmosphere 995.0 90 > th dose dependent rect. 2 17
37 16.53 temperature 30.0 10 < th dose dependent rect. 2 17
39 16.54 atmosphere 1000.0 10 > th dose independent rect. 2 18
42 16.57 atmosphere 1000.0 90 > th dose independent rect. 2 17
47 16.59 radiation 1.0 30 < th dose independent sin 1 NA
49 16.60 temperature 25.0 10 < th dose independent rect. 2 16
52 16.61 radiation 40.0 90 < th dose dependent rect. 11 8
61 16.64 temperature 25.0 10 < th dose independent rect. 2 7
62 16.64 temperature 25.0 10 < th dose independent rect. 2 10
70 16.65 atmosphere 995.0 10 > th dose dependent rect. 2 18
77 16.67 radiation 20.0 90 < th dose dependent rect. 2 17
88 16.69 temperature 25.0 10 < th dose independent rect. 2 12
89 16.69 temperature 10.0 10 > th dose dependent sin 3 NA
92 16.69 radiation 1.0 90 < th dose dependent rect. 3 16
96 16.70 temperature 20.0 10 > th dose dependent sin 3 NA
108 16.73 temperature 30.0 10 < th dose dependent rect. 2 13
117 16.75 radiation 1.0 30 > th dose independent sin 1 NA
119 16.75 temperature 25.0 10 > th dose dependent sin 5 NA
131 16.77 radiation 40.0 90 < th dose independent rect. 2 17
137 16.78 temperature 25.0 10 > th dose dependent rect. 20 18
143 16.79 atmosphere 995.0 90 > th dose dependent rect. 24 19
146 16.80 atmosphere 1000.0 10 > th dose independent rect. 24 20
147 16.80 radiation 1.0 90 < th dose independent rect. 23 20
151 16.80 radiation 10.0 10 < th dose dependent rect. 4 16
154 16.81 radiation 40.0 90 < th dose independent rect. 11 8
161 16.81 atmosphere 995.0 10 > th dose dependent rect. 24 20
165 16.82 radiation 40.0 270 < th dose independent rect. 23 18
168 16.82 radiation 10.0 30 < th dose dependent sin 2 NA
175 16.82 radiation 20.0 10 < th dose dependent rect. 24 20
215 16.87 temperature 25.0 10 > th dose independent rect. 5 9
222 16.87 radiation 1.0 90 < th dose dependent rect. 5 14
248 16.90 radiation 40.0 10 < th dose dependent rect. 11 9
251 16.90 temperature 10.0 10 > th dose dependent rect. 20 18
261 16.91 temperature 30.0 10 < th dose dependent sin 2 NA
266 16.92 temperature 25.0 10 < th dose independent sin 4 NA
283 16.94 temperature 20.0 270 > th dose independent rect. 4 10
287 16.94 radiation 40.0 270 < th dose independent rect. 22 20
340 16.99 radiation 40.0 10 < th dose independent rect. 11 9
349 16.99 temperature 25.0 10 > th dose dependent rect. 20 20
351 17.00 radiation 20.0 90 < th dose independent rect. 11 8
357 17.00 radiation 20.0 90 < th dose dependent rect. 7 12
364 17.01 radiation 40.0 10 < th dose independent rect. 2 18
398 17.04 temperature 25.0 10 > th dose independent rect. 2 12
411 17.04 radiation 20.0 10 < th dose dependent rect. 7 23
436 17.07 radiation 20.0 90 < th dose independent rect. 23 20
456 17.09 radiation 40.0 90 < th dose dependent rect. 13 6
502 17.12 humidity 60.0 10 > th dose dependent rect. 2 18
506 17.12 radiation 20.0 10 < th dose dependent rect. 11 22
536 17.15 radiation 40.0 10 < th dose independent rect. 24 20
558 17.17 temperature 25.0 10 > th dose independent sin 4 NA
597 17.18 temperature 10.0 10 > th dose dependent rect. 20 20
619 17.19 humidity 60.0 10 > th dose dependent rect. 24 20
696 17.23 radiation 1.0 90 > th dose independent rect. 5 10
728 17.24 radiation 20.0 90 < th dose independent rect. 13 6
795 17.27 temperature 15.0 90 > th dose independent rect. 19 7
800 17.27 radiation 30.0 43200 < th dose dependent rect. 21 6
822 17.29 precipitation 0.1 90 < th dose independent rect. 19 7
830 17.29 precipitation 0.1 90 < th dose dependent rect. 19 7
835 17.29 temperature 10.0 90 > th dose dependent rect. 19 20
855 17.30 radiation 20.0 10 < th dose dependent rect. 7 13
868 17.31 temperature 30.0 90 < th dose independent rect. 19 7
869 17.31 humidity 50.0 90 > th dose independent rect. 19 7
871 17.31 atmosphere 995.0 90 > th dose independent rect. 19 7
872 17.31 radiation 1.0 90 < th dose independent rect. 19 7
881 17.31 temperature 15.0 90 > th dose independent rect. 3 16
883 17.31 atmosphere 1015.0 90 < th dose independent rect. 2 17
889 17.31 radiation 1.0 90 < th dose dependent rect. 19 7
900 17.32 wind 9.0 90 < th dose independent rect. 19 7
923 17.33 radiation 10.0 90 < th dose independent rect. 7 12
958 17.34 radiation 20.0 10 < th dose independent rect. 24 20
987 17.35 wind 9.0 90 < th dose independent rect. 2 17