Os06g0332400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : VHS domain containing protein.
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Os06g0332400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : VHS domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.77 | 0.204 | 11 | 0.882 | 0.727 | -0.0687 | -0.632 | 1.63 | 0.369 | 6.73 | 21.73 | 3191 | -- | -- |
| 21.1 | 0.214 | 11.1 | 0.762 | 0.68 | -0.507 | -0.559 | -- | 0.314 | 6.73 | 16.43 | 18836 | -- | -- |
| 19.42 | 0.205 | 11 | 0.907 | 0.722 | -0.123 | -- | 1.56 | 0.368 | 6.83 | 22.2 | 1990 | -- | -- |
| 21.17 | 0.214 | 11.1 | 0.786 | 0.721 | -0.556 | -- | -- | 0.324 | 6.83 | 14.2 | 47520 | -- | -- |
| 46.12 | 0.316 | 11 | 1.03 | -- | -0.21 | -- | 1.71 | 0.448 | -- | 22.8 | 1959 | -- | -- |
| 24.71 | 0.233 | 11.1 | 0.32 | 0.727 | -- | -0.639 | -- | 0.193 | 6.78 | -- | -- | -- | -- |
| 25.74 | 0.238 | 11.1 | 0.309 | 0.725 | -- | -- | -- | 0.195 | 6.85 | -- | -- | -- | -- |
| 48.43 | 0.324 | 11.1 | 0.805 | -- | -0.576 | -- | -- | 0.343 | -- | 14.22 | 45457 | -- | -- |
| 28.14 | 0.247 | 11.1 | -- | 0.729 | -0.0646 | -- | -- | 0.168 | 6.82 | 11.7 | 47520 | -- | -- |
| 53.24 | 0.341 | 11.1 | 0.325 | -- | -- | -- | -- | 0.209 | -- | -- | -- | -- | -- |
| 28.26 | 0.249 | 11.1 | -- | 0.728 | -- | -- | -- | 0.16 | 6.83 | -- | -- | -- | -- |
| 51.37 | 0.334 | 11.1 | -- | -- | 0.293 | -- | -- | 0.126 | -- | 33.63 | 47520 | -- | -- |
| 56.03 | 0.349 | 11.1 | -- | -- | -- | -- | -- | 0.173 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.92 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 13 | 18.12 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 27 | 18.25 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 5 |
| 36 | 18.27 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 39 | 18.29 | humidity | 90 | 14400 | > th | dose independent | sin | 12 | NA |
| 40 | 18.29 | humidity | 80 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 43 | 18.29 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 10 |
| 44 | 18.30 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 9 |
| 58 | 18.33 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 66 | 18.36 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 129 | 18.48 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 131 | 18.49 | humidity | 80 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 138 | 18.50 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 147 | 18.52 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 148 | 18.52 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 189 | 18.61 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 191 | 18.62 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 207 | 18.62 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 10 |
| 208 | 18.62 | radiation | 1 | 43200 | < th | dose dependent | rect. | 5 | 13 |
| 210 | 18.63 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 8 |
| 213 | 18.64 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 216 | 18.64 | radiation | 1 | 43200 | < th | dose dependent | rect. | 5 | 7 |
| 242 | 18.66 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 12 |
| 248 | 18.67 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 249 | 18.67 | radiation | 1 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 250 | 18.67 | radiation | 1 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 252 | 18.67 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 260 | 18.67 | radiation | 1 | 43200 | < th | dose dependent | rect. | 1 | 11 |
| 282 | 18.68 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 12 |
| 283 | 18.68 | radiation | 1 | 43200 | < th | dose dependent | sin | 4 | NA |
| 329 | 18.69 | radiation | 1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 422 | 18.72 | radiation | 1 | 43200 | > th | dose independent | sin | 2 | NA |
| 423 | 18.72 | radiation | 1 | 43200 | < th | dose independent | sin | 2 | NA |
| 456 | 18.73 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 458 | 18.73 | radiation | 1 | 43200 | < th | dose independent | rect. | 14 | 3 |
| 482 | 18.73 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 486 | 18.73 | humidity | 90 | 14400 | > th | dose dependent | rect. | 16 | 13 |
| 487 | 18.74 | humidity | 90 | 14400 | < th | dose independent | sin | 12 | NA |
| 490 | 18.74 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 493 | 18.74 | radiation | 1 | 43200 | > th | dose independent | rect. | 13 | 4 |
| 497 | 18.74 | radiation | 1 | 43200 | > th | dose independent | rect. | 5 | 7 |
| 498 | 18.74 | radiation | 1 | 43200 | < th | dose independent | rect. | 5 | 7 |
| 591 | 18.75 | radiation | 1 | 43200 | < th | dose dependent | rect. | 16 | 20 |
| 659 | 18.76 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 20 |
| 661 | 18.76 | humidity | 90 | 14400 | > th | dose dependent | sin | 12 | NA |
| 666 | 18.76 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 12 |
| 672 | 18.76 | radiation | 1 | 43200 | < th | dose dependent | rect. | 5 | 20 |
| 744 | 18.78 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 760 | 18.78 | radiation | 1 | 43200 | > th | dose independent | rect. | 16 | 20 |
| 767 | 18.78 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 773 | 18.78 | radiation | 1 | 14400 | < th | dose dependent | rect. | 19 | 11 |
| 840 | 18.79 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 841 | 18.79 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 882 | 18.79 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 23 |
| 886 | 18.80 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 888 | 18.80 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 3 |
| 890 | 18.80 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 15 | 4 |
| 959 | 18.80 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 23 |
| 966 | 18.81 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 999 | 18.82 | radiation | 1 | 43200 | < th | dose independent | no | NA | NA |