BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0506000 Os07g0506000|AK068687
(301 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0506000 Protein of unknown function DUF300 family protein 616 e-177
Os05g0516900 Protein of unknown function DUF300 family protein 135 2e-32
Os02g0670000 Protein of unknown function DUF300 family protein 125 5e-29
Os06g0726600 Protein of unknown function DUF300 family protein 113 2e-25
Os07g0244300 Protein of unknown function DUF300 family protein 107 8e-24
Os03g0406900 Protein of unknown function DUF300 family protein 67 2e-11
>Os07g0506000 Protein of unknown function DUF300 family protein
Length = 301
Score = 616 bits (1588), Expect = e-177, Method: Compositional matrix adjust.
Identities = 301/301 (100%), Positives = 301/301 (100%)
Query: 1 MSMSLFPGMDLTKMDAPTLTLLGAACCVMLSMHFTVQLVSQHLFYWKNPKEQKAILIIVL 60
MSMSLFPGMDLTKMDAPTLTLLGAACCVMLSMHFTVQLVSQHLFYWKNPKEQKAILIIVL
Sbjct: 1 MSMSLFPGMDLTKMDAPTLTLLGAACCVMLSMHFTVQLVSQHLFYWKNPKEQKAILIIVL 60
Query: 61 MAPLYAINSFVGLLDIKGSKTFFTFLDAVKECYEALAIAKFMALMYSYLNISISKNIVPD 120
MAPLYAINSFVGLLDIKGSKTFFTFLDAVKECYEALAIAKFMALMYSYLNISISKNIVPD
Sbjct: 61 MAPLYAINSFVGLLDIKGSKTFFTFLDAVKECYEALAIAKFMALMYSYLNISISKNIVPD 120
Query: 121 EIKGRVLHHSFPVSLFLPRNVRLEHKTLKLLKYWTWQFVVVRPICAILMITLQLLGLYPS 180
EIKGRVLHHSFPVSLFLPRNVRLEHKTLKLLKYWTWQFVVVRPICAILMITLQLLGLYPS
Sbjct: 121 EIKGRVLHHSFPVSLFLPRNVRLEHKTLKLLKYWTWQFVVVRPICAILMITLQLLGLYPS 180
Query: 181 WVSWTFTIILNFSVSMALYALVIFYHLFAKELAPHKPLAKFLCIKGIVFFSFWQGFALEV 240
WVSWTFTIILNFSVSMALYALVIFYHLFAKELAPHKPLAKFLCIKGIVFFSFWQGFALEV
Sbjct: 181 WVSWTFTIILNFSVSMALYALVIFYHLFAKELAPHKPLAKFLCIKGIVFFSFWQGFALEV 240
Query: 241 LAAVGIIQSHHFWLDVEHIQEAIQNVLVIIEMVFFSVLQQYAYHVAPYSGADRAKFEKKN 300
LAAVGIIQSHHFWLDVEHIQEAIQNVLVIIEMVFFSVLQQYAYHVAPYSGADRAKFEKKN
Sbjct: 241 LAAVGIIQSHHFWLDVEHIQEAIQNVLVIIEMVFFSVLQQYAYHVAPYSGADRAKFEKKN 300
Query: 301 E 301
E
Sbjct: 301 E 301
>Os05g0516900 Protein of unknown function DUF300 family protein
Length = 488
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 157/308 (50%), Gaps = 29/308 (9%)
Query: 7 PGMDLTKMDAPTLTLLGAACCVMLSMHFTVQLVSQHLFYWKNPKEQKAILIIVLMAPLYA 66
PG P+ ++ A V S+ ++ L+ +HL + P+EQK ++ ++LM P+YA
Sbjct: 29 PGFVSLSESLPSWPIVSAGISVTASLVLSLFLIFEHLCAYHQPEEQKFLIGLILMVPVYA 88
Query: 67 INSFVGLLDIKGSKTFFTFLDAVKECYEALAIAKF--------------MALMYSYLNIS 112
+ SF LL+ S F + +++CYEA A+ F + M S
Sbjct: 89 VQSFFSLLN---SNVAF-ICELMRDCYEAFAMYCFERYLIACLGGEESTIRFMEGRFQFS 144
Query: 113 ISKNIVPDEIKGRVLHHSFPVSLFLPRNVRLEHKTLKLLKYWTWQFVVVRPICAILMITL 172
S ++ + ++ H FP++ F+ RN L +K Q+++++PICAIL I +
Sbjct: 145 ESSPLLDVDYDYGIVKHPFPLNWFM-RNWYLGPDFYHAVKVGIVQYMILKPICAILAIFM 203
Query: 173 QLLGLYPSW-VSWTF-----TIILNFSVSMALYALVIFYHLFAKELAPHKPLAKFLCIKG 226
QL+G+Y +W + I+LNFS + ALY L+ FY ++L P KPL+KFL K
Sbjct: 204 QLIGIYGEGKFAWRYGYPYLAIVLNFSQTWALYCLIQFYTATKEKLEPIKPLSKFLTFKS 263
Query: 227 IVFFSFWQGFALEVLAAVGIIQSHHFWLDVEHIQEAIQNVLVIIEMVFFSVLQQYAYHVA 286
IVF ++WQG A+ L + G+ + H + Q IQ+ ++ +EM +V+ +
Sbjct: 264 IVFLTWWQGIAVAFLFSTGLFKGHL----AQRFQTRIQDYIICLEMGVAAVVHLKVFPAK 319
Query: 287 PYSGADRA 294
PY +R+
Sbjct: 320 PYRRGERS 327
>Os02g0670000 Protein of unknown function DUF300 family protein
Length = 475
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 154/294 (52%), Gaps = 27/294 (9%)
Query: 16 APTLTLLGAACCVMLSMHFTVQLVSQHLFYWKNPKEQKAILIIVLMAPLYAINSFVGLLD 75
APT +L + ++LS+ ++ L+ QHL + NP+EQK +L ++LM P YA+ S+V L++
Sbjct: 17 APTWAILISGFFMLLSVSLSMYLIFQHLSAYNNPEEQKFVLGVILMVPCYAVESYVSLVN 76
Query: 76 IKGSKTFFTFLDAVKECYEALAI--------------AKFMALMYSYLNISISKNIVPDE 121
S + +++ YEA A+ + +A + + ++
Sbjct: 77 PDTS----VYCGILRDAYEAFAMYCFGRYITACLGGEERTIAFLKREGGGDSGEPLLHGA 132
Query: 122 IKGRVLHHSFPVSLFLPRNVRLEHKTLKLLKYWTWQFVVVRPICAILMITLQLLGLYPSW 181
+ ++HH FPV+ L + R+ + +++K+ +Q+V+++ + A L + LQ G Y
Sbjct: 133 SEKGIIHHHFPVNYIL-KPWRMGVRFYQIIKFGIFQYVIIKTLTASLSLILQPFGAYCDG 191
Query: 182 -----VSWT-FTIILNFSVSMALYALVIFYHLFAKELAPHKPLAKFLCIKGIVFFSFWQG 235
+ F +LNFS ALY LV +Y ELA KPLAKFL K IVF ++WQG
Sbjct: 192 EFNLRCGYPYFAAVLNFSQYWALYCLVEWYTATKDELAHIKPLAKFLSFKSIVFLTWWQG 251
Query: 236 FALEVLAAVGIIQSHHFWLDVEHIQEAIQNVLVIIEMVFFSVLQQYAYHVAPYS 289
+ ++ ++G+++S ++ +IQ+ ++ IEM SV+ Y + PYS
Sbjct: 252 IMIAIMYSLGLVRSP--LAQSLELKSSIQDFIICIEMGIASVVHLYVFPAKPYS 303
>Os06g0726600 Protein of unknown function DUF300 family protein
Length = 479
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 141/269 (52%), Gaps = 29/269 (10%)
Query: 41 QHLFYWKNPKEQKAILIIVLMAPLYAINSFVGLLDIKGSKTFFTFLDAVKECYEALAIAK 100
HL +KNP+EQK ++ ++LM P YA+ S++ L++ + ++ +++ YEA A+
Sbjct: 41 NHLSAYKNPEEQKFLVGVILMVPCYAVESYISLVN----PSISVDIEILRDGYEAFAMYC 96
Query: 101 FMALMYSYLNI-----------SISKNIVP---DEIKGRVLHHSFPVSLFLPRNVRLEHK 146
F + + L S + VP E R ++H FP++ L + L
Sbjct: 97 FGRYLVACLGGEDRTIEFLKREGSSGSDVPLLDHETGQRYVNHPFPMNYML-KPWPLGEW 155
Query: 147 TLKLLKYWTWQFVVVRPICAILMITLQLLGLYPS----W-VSWTFT-IILNFSVSMALYA 200
++K+ Q+V+++ ICAIL + L+ G+Y W +++T ++LNFS S ALY
Sbjct: 156 FYLVIKFGLVQYVIIKTICAILAVILESFGVYCEGEFKWNCGYSYTAVVLNFSQSWALYC 215
Query: 201 LVIFYHLFAKELAPHKPLAKFLCIKGIVFFSFWQGFALEVLAAVGIIQSHHFWLDVE-HI 259
LV FY ELA KPLAKFL K IVF ++WQG + +L G+++ + E
Sbjct: 216 LVQFYAAIKDELAHIKPLAKFLTFKSIVFLTWWQGVVIALLYNWGLLRGP---IAQELQF 272
Query: 260 QEAIQNVLVIIEMVFFSVLQQYAYHVAPY 288
+ +IQ+ ++ IEM S+ Y + PY
Sbjct: 273 KSSIQDFIICIEMGVASIAHLYVFPAKPY 301
>Os07g0244300 Protein of unknown function DUF300 family protein
Length = 403
Score = 107 bits (268), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 142/268 (52%), Gaps = 24/268 (8%)
Query: 37 QLVSQHLFYWKNPKEQKAILIIVLMAPLYAINSFVGLLDIKGSKTFFTFLDAVKECYEAL 96
+LV +HL ++ P Q+ I+ I+LM P+YA+ SF+ L+ + GS +F ++++E Y+A
Sbjct: 27 RLVYRHLLHYAEPTHQRFIVRIILMVPVYAVMSFLSLV-LPGSAIYF---NSIREIYDAW 82
Query: 97 AIAKFMALMYSYLNISISKNIVPDEIKGRVLHHSFPVSLFLPRNVRLEHKTLKLLKYWTW 156
I F +L +++ V + GR L S+ + V L+ + ++ K
Sbjct: 83 VIYNFFSLCLAWVG---GPGAVVVSLTGRSLKPSWFMMTCCFSAVPLDGRFIRRCKQGCL 139
Query: 157 QFVVVRPICAILMITLQLLGLYPSW---VSWTF---TIILNFSVSMALYALVIFYHLFAK 210
QFV+++PI ++ L G Y V+ ++ TII S SMAL+AL +FY
Sbjct: 140 QFVILKPILVVITFILYAKGKYEDGNFSVNQSYLYITIIYTISYSMALFALALFYVACRD 199
Query: 211 ELAPHKPLAKFLCIKGIVFFSFWQGFALEVLAAVGIIQSHHFWLDVEHIQEA--IQNVLV 268
L P+ P+ KF+ IK +VF ++WQG L LAA +++ +EA +QN ++
Sbjct: 200 LLQPYNPVPKFIIIKSVVFLTYWQG-VLVFLAAKSRF--------IKNAEEAAYLQNFVL 250
Query: 269 IIEMVFFSVLQQYAYHVAPYSGADRAKF 296
+EM+ ++ Q+A+ Y+G++ F
Sbjct: 251 CVEMLIAAIGHQFAFSYKEYAGSNARPF 278
>Os03g0406900 Protein of unknown function DUF300 family protein
Length = 120
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 55/88 (62%), Gaps = 6/88 (6%)
Query: 188 IILNFSVSMALYALVIFYHLFAKELAPHKPLAKFLCIKGIVFFSFWQGFALEVLAAVGII 247
+++NFS + ALY LV FY+ ++L +PLAKF+ K IVF ++WQG + ++ +GI+
Sbjct: 38 VVINFSQTWALYCLVKFYNATHEKLQEIRPLAKFISFKAIVFATWWQGLGIAIICHIGIL 97
Query: 248 QSHHFWLDVEHIQEAIQNVLVIIEMVFF 275
+Q AIQ+ L+ IE+++F
Sbjct: 98 PKE------GKVQNAIQDFLICIEVIYF 119
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.330 0.141 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,704,081
Number of extensions: 307009
Number of successful extensions: 810
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 796
Number of HSP's successfully gapped: 7
Length of query: 301
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 201
Effective length of database: 11,814,401
Effective search space: 2374694601
Effective search space used: 2374694601
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 156 (64.7 bits)