Os03g0406900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF300 family protein.
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Os03g0406900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF300 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 194.18 | 0.655 | 4.76 | -0.303 | 0.892 | -0.756 | -0.604 | 2.21 | -0.512 | 9.14 | 19.8 | 585 | -- | -- |
| 203.65 | 0.665 | 4.7 | -0.0317 | 0.939 | -1.19 | -0.0393 | -- | -0.434 | 9.12 | 19.3 | 600 | -- | -- |
| 194.56 | 0.65 | 4.75 | -0.277 | 0.893 | -0.817 | -- | 2.07 | -0.5 | 9.01 | 19.54 | 584 | -- | -- |
| 198.95 | 0.657 | 4.72 | -0.251 | 0.868 | -1.37 | -- | -- | -0.525 | 9.26 | 19.22 | 2144 | -- | -- |
| 232.77 | 0.711 | 4.8 | -0.457 | -- | -0.97 | -- | 2.27 | -0.55 | -- | 19.42 | 1745 | -- | -- |
| 232.89 | 0.715 | 4.66 | 0.376 | 0.803 | -- | -0.0204 | -- | -0.249 | 9.05 | -- | -- | -- | -- |
| 232.89 | 0.715 | 4.66 | 0.375 | 0.803 | -- | -- | -- | -0.249 | 9.05 | -- | -- | -- | -- |
| 237.89 | 0.718 | 4.75 | -0.394 | -- | -1.56 | -- | -- | -0.534 | -- | 18.7 | 3207 | -- | -- |
| 199.56 | 0.658 | 4.71 | -- | 0.872 | -1.29 | -- | -- | -0.481 | 9.18 | 19.1 | 2104 | -- | -- |
| 270.03 | 0.768 | 4.68 | 0.374 | -- | -- | -- | -- | -0.244 | -- | -- | -- | -- | -- |
| 236.6 | 0.72 | 4.67 | -- | 0.804 | -- | -- | -- | -0.291 | 9.01 | -- | -- | -- | -- |
| 240.43 | 0.722 | 4.73 | -- | -- | -1.28 | -- | -- | -0.466 | -- | 18.78 | 3172 | -- | -- |
| 273.71 | 0.772 | 4.69 | -- | -- | -- | -- | -- | -0.286 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 187.13 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 19 |
| 6 | 188.11 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 22 | 13 |
| 12 | 188.75 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 20 | 11 |
| 19 | 189.01 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 21 | 8 |
| 20 | 189.07 | temperature | 20.0 | 720 | < th | dose independent | sin | 11 | NA |
| 21 | 189.10 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 22 | 5 |
| 25 | 189.33 | temperature | 20.0 | 720 | > th | dose independent | sin | 8 | NA |
| 26 | 189.38 | temperature | 20.0 | 720 | < th | dose independent | rect. | 19 | 13 |
| 34 | 189.56 | temperature | 25.0 | 720 | < th | dose dependent | sin | 11 | NA |
| 55 | 190.06 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 21 | 18 |
| 64 | 190.21 | temperature | 20.0 | 720 | < th | dose independent | rect. | 22 | 4 |
| 75 | 190.40 | temperature | 20.0 | 720 | < th | dose independent | rect. | 23 | 2 |
| 77 | 190.41 | temperature | 20.0 | 720 | < th | dose independent | rect. | 21 | 6 |
| 82 | 190.50 | temperature | 20.0 | 720 | < th | dose independent | rect. | 21 | 8 |
| 119 | 191.18 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 121 | 191.19 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 23 | 2 |
| 127 | 191.26 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 9 |
| 143 | 191.47 | temperature | 25.0 | 270 | < th | dose dependent | sin | 7 | NA |
| 146 | 191.53 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 7 |
| 149 | 191.54 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 12 |
| 212 | 192.37 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 10 |
| 217 | 192.42 | temperature | 10.0 | 720 | > th | dose dependent | sin | 9 | NA |
| 238 | 192.76 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 12 |
| 259 | 193.01 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 265 | 193.09 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 8 |
| 311 | 193.63 | temperature | 30.0 | 10 | < th | dose dependent | sin | 5 | NA |
| 333 | 193.86 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 22 | 21 |
| 344 | 193.95 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 24 | 18 |
| 354 | 194.02 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 22 | 19 |
| 379 | 194.15 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 4 | NA |
| 384 | 194.18 | temperature | 10.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 393 | 194.23 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 13 |
| 397 | 194.25 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 4 |
| 414 | 194.35 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 4 |
| 423 | 194.45 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 426 | 194.45 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 430 | 194.47 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 432 | 194.48 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 2 |
| 439 | 194.51 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 442 | 194.52 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 21 |
| 480 | 194.65 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 481 | 194.65 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 487 | 194.66 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 16 | 22 |
| 492 | 194.68 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 8 |
| 504 | 194.71 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 515 | 194.75 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 548 | 194.82 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 23 |
| 628 | 195.10 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 23 |
| 633 | 195.11 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 16 |
| 661 | 195.23 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 8 | 6 |
| 669 | 195.26 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 4 | 5 |
| 726 | 195.47 | temperature | 20.0 | 270 | > th | dose independent | rect. | 2 | 22 |
| 739 | 195.51 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 741 | 195.52 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 742 | 195.52 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 758 | 195.57 | temperature | 20.0 | 720 | > th | dose independent | rect. | 9 | 22 |
| 777 | 195.66 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 14 | NA |
| 836 | 195.89 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 870 | 196.00 | temperature | 10.0 | 10 | > th | dose dependent | sin | 5 | NA |
| 878 | 196.04 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 890 | 196.08 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 893 | 196.08 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 16 | 11 |
| 931 | 196.27 | temperature | 20.0 | 720 | < th | dose independent | no | NA | NA |
| 935 | 196.28 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 946 | 196.31 | temperature | 20.0 | 720 | > th | dose independent | no | NA | NA |
| 986 | 196.45 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 16 |
| 992 | 196.48 | wind | 7.0 | 43200 | > th | dose independent | rect. | 10 | 1 |