BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0406900 Os03g0406900|J065213L07
(120 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0406900 Protein of unknown function DUF300 family protein 249 5e-67
Os05g0516900 Protein of unknown function DUF300 family protein 115 7e-27
Os02g0670000 Protein of unknown function DUF300 family protein 112 4e-26
Os04g0563100 Protein of unknown function DUF300 family protein 112 6e-26
Os06g0726600 Protein of unknown function DUF300 family protein 109 5e-25
Os07g0506000 Protein of unknown function DUF300 family protein 67 3e-12
>Os03g0406900 Protein of unknown function DUF300 family protein
Length = 120
Score = 249 bits (635), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 TCNCYRQYTCNDFFNDSNGSFSLNQCIHLTYRYPYIAVVINFSQTWALYCLVKFYNATHE 60
TCNCYRQYTCNDFFNDSNGSFSLNQCIHLTYRYPYIAVVINFSQTWALYCLVKFYNATHE
Sbjct: 1 TCNCYRQYTCNDFFNDSNGSFSLNQCIHLTYRYPYIAVVINFSQTWALYCLVKFYNATHE 60
Query: 61 KLQEIRPLAKFISFKAIVFATWWQGLGIAIICHIGILPKEGKVQNAIQDFLICIEVIYFL 120
KLQEIRPLAKFISFKAIVFATWWQGLGIAIICHIGILPKEGKVQNAIQDFLICIEVIYFL
Sbjct: 61 KLQEIRPLAKFISFKAIVFATWWQGLGIAIICHIGILPKEGKVQNAIQDFLICIEVIYFL 120
>Os05g0516900 Protein of unknown function DUF300 family protein
Length = 488
Score = 115 bits (288), Expect = 7e-27, Method: Composition-based stats.
Identities = 48/88 (54%), Positives = 68/88 (77%), Gaps = 2/88 (2%)
Query: 31 YRYPYIAVVINFSQTWALYCLVKFYNATHEKLQEIRPLAKFISFKAIVFATWWQGLGIAI 90
Y YPY+A+V+NFSQTWALYCL++FY AT EKL+ I+PL+KF++FK+IVF TWWQG+ +A
Sbjct: 218 YGYPYLAIVLNFSQTWALYCLIQFYTATKEKLEPIKPLSKFLTFKSIVFLTWWQGIAVAF 277
Query: 91 ICHIGILPKE--GKVQNAIQDFLICIEV 116
+ G+ + Q IQD++IC+E+
Sbjct: 278 LFSTGLFKGHLAQRFQTRIQDYIICLEM 305
>Os02g0670000 Protein of unknown function DUF300 family protein
Length = 475
Score = 112 bits (281), Expect = 4e-26, Method: Composition-based stats.
Identities = 50/88 (56%), Positives = 70/88 (79%), Gaps = 4/88 (4%)
Query: 33 YPYIAVVINFSQTWALYCLVKFYNATHEKLQEIRPLAKFISFKAIVFATWWQGLGIAIIC 92
YPY A V+NFSQ WALYCLV++Y AT ++L I+PLAKF+SFK+IVF TWWQG+ IAI+
Sbjct: 199 YPYFAAVLNFSQYWALYCLVEWYTATKDELAHIKPLAKFLSFKSIVFLTWWQGIMIAIMY 258
Query: 93 HIGI----LPKEGKVQNAIQDFLICIEV 116
+G+ L + +++++IQDF+ICIE+
Sbjct: 259 SLGLVRSPLAQSLELKSSIQDFIICIEM 286
>Os04g0563100 Protein of unknown function DUF300 family protein
Length = 104
Score = 112 bits (280), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 53/92 (57%), Positives = 73/92 (79%), Gaps = 4/92 (4%)
Query: 32 RYPYIAVVINFSQTWALYCLVKFYNATHEKLQEIRPLAKFISFKAIVFATWWQGLGIAII 91
RYPY A V+NFSQ WALYCLV++Y AT ++L I+PLAKF+SFK+IVF TWWQG+ IAI+
Sbjct: 2 RYPYFAAVLNFSQYWALYCLVEWYTATKDELAHIKPLAKFLSFKSIVFLTWWQGVVIAIM 61
Query: 92 CHIGI----LPKEGKVQNAIQDFLICIEVIYF 119
+G+ L + +++++IQDF+ICIEV+ F
Sbjct: 62 YSLGLLRSPLAQSLELKSSIQDFIICIEVLVF 93
>Os06g0726600 Protein of unknown function DUF300 family protein
Length = 479
Score = 109 bits (272), Expect = 5e-25, Method: Composition-based stats.
Identities = 49/88 (55%), Positives = 70/88 (79%), Gaps = 4/88 (4%)
Query: 33 YPYIAVVINFSQTWALYCLVKFYNATHEKLQEIRPLAKFISFKAIVFATWWQGLGIAIIC 92
Y Y AVV+NFSQ+WALYCLV+FY A ++L I+PLAKF++FK+IVF TWWQG+ IA++
Sbjct: 198 YSYTAVVLNFSQSWALYCLVQFYAAIKDELAHIKPLAKFLTFKSIVFLTWWQGVVIALLY 257
Query: 93 HIGIL----PKEGKVQNAIQDFLICIEV 116
+ G+L +E + +++IQDF+ICIE+
Sbjct: 258 NWGLLRGPIAQELQFKSSIQDFIICIEM 285
>Os07g0506000 Protein of unknown function DUF300 family protein
Length = 301
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 55/88 (62%), Gaps = 6/88 (6%)
Query: 38 VVINFSQTWALYCLVKFYNATHEKLQEIRPLAKFISFKAIVFATWWQGLGIAIICHIGIL 97
+++NFS + ALY LV FY+ ++L +PLAKF+ K IVF ++WQG + ++ +GI+
Sbjct: 188 IILNFSVSMALYALVIFYHLFAKELAPHKPLAKFLCIKGIVFFSFWQGFALEVLAAVGII 247
Query: 98 PKE------GKVQNAIQDFLICIEVIYF 119
+Q AIQ+ L+ IE+++F
Sbjct: 248 QSHHFWLDVEHIQEAIQNVLVIIEMVFF 275
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.332 0.144 0.486
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,841,842
Number of extensions: 134389
Number of successful extensions: 259
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 254
Number of HSP's successfully gapped: 7
Length of query: 120
Length of database: 17,035,801
Length adjustment: 86
Effective length of query: 34
Effective length of database: 12,545,397
Effective search space: 426543498
Effective search space used: 426543498
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 149 (62.0 bits)