Os05g0516900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF300 family protein.
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Os05g0516900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF300 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.66 | 0.3 | 9.05 | -0.579 | 1.19 | -0.451 | -0.533 | 0.389 | -0.291 | 4.59 | 77.65 | 806 | -- | -- |
| 40.88 | 0.298 | 9.05 | -0.603 | 1.2 | -0.423 | -0.544 | -- | -0.293 | 4.62 | 77.38 | 818 | -- | -- |
| 41.39 | 0.3 | 9.05 | -0.571 | 1.19 | -0.451 | -- | 0.46 | -0.286 | 4.53 | 79 | 805 | -- | -- |
| 41.67 | 0.301 | 9.05 | -0.598 | 1.21 | -0.426 | -- | -- | -0.289 | 4.58 | 78.39 | 848 | -- | -- |
| 65.33 | 0.376 | 9.05 | -0.555 | -- | -1.63 | -- | 1.26 | -0.205 | -- | 163 | 337 | -- | -- |
| 44.4 | 0.312 | 9.04 | -0.662 | 1.28 | -- | -0.536 | -- | -0.268 | 5.05 | -- | -- | -- | -- |
| 45.12 | 0.315 | 9.04 | -0.661 | 1.28 | -- | -- | -- | -0.265 | 5.02 | -- | -- | -- | -- |
| 67.26 | 0.382 | 9.05 | -0.606 | -- | -1.54 | -- | -- | -0.214 | -- | 133.3 | 331 | -- | -- |
| 50.94 | 0.332 | 9.05 | -- | 1.24 | -0.526 | -- | -- | -0.251 | 4.56 | 76.01 | 916 | -- | -- |
| 130.77 | 0.534 | 9.05 | -0.615 | -- | -- | -- | -- | -0.233 | -- | -- | -- | -- | -- |
| 56.65 | 0.352 | 9.02 | -- | 1.27 | -- | -- | -- | -0.192 | 5.04 | -- | -- | -- | -- |
| 76.93 | 0.408 | 9.04 | -- | -- | -1.52 | -- | -- | -0.147 | -- | 95 | 333 | -- | -- |
| 140.75 | 0.554 | 9.04 | -- | -- | -- | -- | -- | -0.165 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.58 | humidity | 50 | 720 | > th | dose independent | rect. | 8 | 14 |
| 2 | 38.61 | humidity | 50 | 720 | > th | dose independent | rect. | 10 | 10 |
| 3 | 38.80 | humidity | 50 | 720 | > th | dose independent | rect. | 9 | 20 |
| 4 | 38.81 | humidity | 50 | 720 | > th | dose independent | rect. | 9 | 12 |
| 13 | 39.17 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 12 |
| 15 | 39.19 | humidity | 50 | 720 | > th | dose dependent | rect. | 10 | 10 |
| 28 | 39.36 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 20 |
| 32 | 39.42 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 7 |
| 34 | 39.44 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 12 |
| 39 | 39.45 | radiation | 10 | 720 | < th | dose dependent | rect. | 13 | 16 |
| 43 | 39.47 | humidity | 50 | 720 | > th | dose independent | rect. | 10 | 16 |
| 68 | 39.59 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 8 |
| 75 | 39.63 | wind | 9 | 14400 | < th | dose independent | sin | 4 | NA |
| 78 | 39.63 | wind | 9 | 14400 | < th | dose independent | rect. | 24 | 15 |
| 92 | 39.65 | radiation | 10 | 720 | < th | dose dependent | rect. | 11 | 19 |
| 94 | 39.66 | wind | 9 | 14400 | < th | dose independent | rect. | 3 | 12 |
| 98 | 39.66 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 20 |
| 122 | 39.73 | humidity | 50 | 720 | > th | dose independent | rect. | 16 | 23 |
| 132 | 39.75 | humidity | 90 | 720 | < th | dose dependent | rect. | 11 | 7 |
| 138 | 39.77 | radiation | 10 | 720 | < th | dose dependent | sin | 15 | NA |
| 139 | 39.77 | humidity | 90 | 720 | < th | dose dependent | rect. | 13 | 5 |
| 140 | 39.77 | humidity | 50 | 720 | > th | dose dependent | rect. | 13 | 7 |
| 153 | 39.80 | humidity | 50 | 720 | > th | dose independent | sin | 21 | NA |
| 158 | 39.81 | humidity | 50 | 720 | > th | dose independent | rect. | 3 | 18 |
| 167 | 39.83 | humidity | 90 | 720 | < th | dose dependent | rect. | 15 | 2 |
| 196 | 39.88 | wind | 9 | 14400 | > th | dose independent | sin | 4 | NA |
| 198 | 39.88 | humidity | 50 | 720 | > th | dose independent | rect. | 13 | 8 |
| 200 | 39.88 | humidity | 50 | 720 | > th | dose independent | rect. | 23 | 23 |
| 209 | 39.90 | wind | 9 | 14400 | < th | dose independent | rect. | 9 | 6 |
| 210 | 39.90 | wind | 9 | 14400 | > th | dose independent | rect. | 3 | 12 |
| 221 | 39.91 | radiation | 1 | 720 | < th | dose independent | sin | 19 | NA |
| 228 | 39.91 | humidity | 60 | 720 | > th | dose independent | rect. | 17 | 18 |
| 252 | 39.94 | humidity | 50 | 720 | > th | dose independent | sin | 3 | NA |
| 261 | 39.95 | wind | 9 | 14400 | > th | dose independent | rect. | 3 | 15 |
| 290 | 39.98 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 15 |
| 303 | 39.99 | humidity | 50 | 720 | > th | dose independent | rect. | 23 | 16 |
| 310 | 40.00 | humidity | 70 | 720 | < th | dose independent | rect. | 15 | 3 |
| 331 | 40.02 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 7 |
| 396 | 40.06 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 3 |
| 399 | 40.07 | humidity | 80 | 720 | > th | dose independent | rect. | 10 | 10 |
| 405 | 40.07 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 22 | 21 |
| 434 | 40.10 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 7 |
| 444 | 40.10 | radiation | 1 | 720 | < th | dose dependent | sin | 22 | NA |
| 457 | 40.11 | humidity | 50 | 720 | > th | dose independent | rect. | 13 | 16 |
| 463 | 40.11 | radiation | 1 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 475 | 40.13 | humidity | 70 | 720 | < th | dose independent | rect. | 15 | 1 |
| 476 | 40.13 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 5 |
| 479 | 40.13 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 8 |
| 510 | 40.14 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 534 | 40.16 | humidity | 80 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 545 | 40.17 | humidity | 50 | 720 | > th | dose dependent | sin | 20 | NA |
| 547 | 40.17 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 3 |
| 577 | 40.20 | humidity | 60 | 720 | > th | dose independent | rect. | 17 | 4 |
| 598 | 40.21 | atmosphere | 1015 | 30 | < th | dose dependent | rect. | 19 | 13 |
| 609 | 40.22 | humidity | 80 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 624 | 40.23 | temperature | 25 | 270 | > th | dose dependent | rect. | 21 | 11 |
| 625 | 40.24 | radiation | 1 | 720 | > th | dose independent | sin | 18 | NA |
| 634 | 40.24 | wind | 9 | 14400 | > th | dose dependent | rect. | 1 | 14 |
| 636 | 40.24 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 22 | 21 |
| 645 | 40.25 | wind | 9 | 14400 | > th | dose dependent | sin | 6 | NA |
| 649 | 40.25 | wind | 9 | 14400 | > th | dose dependent | rect. | 3 | 12 |
| 663 | 40.26 | wind | 9 | 14400 | > th | dose dependent | sin | 4 | NA |
| 665 | 40.26 | humidity | 80 | 14400 | < th | dose dependent | rect. | 21 | 4 |
| 682 | 40.27 | humidity | 60 | 10 | > th | dose dependent | rect. | 10 | 12 |
| 687 | 40.28 | temperature | 25 | 270 | > th | dose independent | rect. | 21 | 11 |
| 691 | 40.28 | humidity | 60 | 10 | > th | dose dependent | rect. | 19 | 3 |
| 735 | 40.31 | radiation | 10 | 720 | > th | dose independent | rect. | 15 | 1 |
| 743 | 40.31 | humidity | 50 | 720 | > th | dose independent | rect. | 1 | 21 |
| 751 | 40.31 | humidity | 80 | 720 | < th | dose dependent | rect. | 11 | 17 |
| 758 | 40.32 | humidity | 60 | 720 | > th | dose independent | rect. | 17 | 12 |
| 762 | 40.32 | radiation | 1 | 720 | > th | dose dependent | rect. | 15 | 3 |
| 769 | 40.32 | humidity | 80 | 720 | < th | dose dependent | rect. | 11 | 15 |
| 791 | 40.34 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 7 |
| 810 | 40.35 | wind | 7 | 14400 | > th | dose dependent | rect. | 11 | 3 |
| 813 | 40.35 | humidity | 60 | 10 | > th | dose dependent | rect. | 14 | 8 |
| 845 | 40.37 | wind | 9 | 14400 | > th | dose dependent | rect. | 3 | 15 |
| 848 | 40.37 | humidity | 80 | 720 | < th | dose dependent | rect. | 13 | 16 |
| 856 | 40.38 | humidity | 80 | 720 | < th | dose dependent | rect. | 13 | 14 |
| 882 | 40.39 | humidity | 50 | 720 | > th | dose dependent | rect. | 10 | 18 |
| 973 | 40.44 | humidity | 80 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 976 | 40.44 | radiation | 10 | 720 | > th | dose independent | rect. | 15 | 15 |
| 981 | 40.44 | wind | 9 | 14400 | > th | dose dependent | rect. | 9 | 6 |
| 992 | 40.45 | radiation | 10 | 720 | > th | dose independent | rect. | 15 | 3 |