Os07g0506000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF300 family protein.
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Os07g0506000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF300 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.55 | 0.218 | 12 | -0.422 | 0.48 | -0.371 | 0.26 | 1.72 | 0.184 | 22 | 23.38 | 285 | -- | -- |
| 22.93 | 0.223 | 11.9 | -0.416 | 0.472 | -0.594 | 0.616 | -- | 0.186 | 21.8 | 13.71 | 10597 | -- | -- |
| 21.72 | 0.217 | 12 | -0.422 | 0.485 | -0.345 | -- | 1.76 | 0.189 | 22.1 | 23.41 | 231 | -- | -- |
| 21.96 | 0.218 | 12 | -0.557 | 0.515 | -0.853 | -- | -- | 0.157 | 21.8 | 13.93 | 21808 | -- | -- |
| 33.25 | 0.269 | 12 | -0.547 | -- | -0.634 | -- | 1.65 | 0.12 | -- | 29.22 | 683 | -- | -- |
| 29.98 | 0.257 | 11.9 | -0.0696 | 0.478 | -- | 0.316 | -- | 0.311 | 21.8 | -- | -- | -- | -- |
| 30.35 | 0.258 | 11.9 | -0.0811 | 0.478 | -- | -- | -- | 0.311 | 21.7 | -- | -- | -- | -- |
| 34.99 | 0.276 | 11.9 | -0.671 | -- | -0.968 | -- | -- | 0.146 | -- | 13.81 | 21925 | -- | -- |
| 26.64 | 0.24 | 11.9 | -- | 0.532 | -0.494 | -- | -- | 0.259 | 21.5 | 14.9 | 10419 | -- | -- |
| 43.92 | 0.31 | 11.9 | -0.0767 | -- | -- | -- | -- | 0.311 | -- | -- | -- | -- | -- |
| 30.52 | 0.258 | 11.9 | -- | 0.478 | -- | -- | -- | 0.32 | 21.7 | -- | -- | -- | -- |
| 39.15 | 0.291 | 11.9 | -- | -- | -0.784 | -- | -- | 0.222 | -- | 19.87 | 2041 | -- | -- |
| 44.08 | 0.31 | 11.9 | -- | -- | -- | -- | -- | 0.319 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.06 | humidity | 80 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 2 | 20.17 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 8 |
| 5 | 20.22 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 12 |
| 9 | 20.26 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 12 |
| 34 | 20.37 | humidity | 90 | 14400 | > th | dose dependent | sin | 5 | NA |
| 36 | 20.38 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 39 | 20.41 | humidity | 90 | 14400 | > th | dose independent | sin | 8 | NA |
| 59 | 20.48 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 11 |
| 69 | 20.52 | humidity | 50 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 71 | 20.53 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 75 | 20.54 | humidity | 50 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 88 | 20.58 | humidity | 50 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 92 | 20.59 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 93 | 20.59 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 99 | 20.60 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 106 | 20.61 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 134 | 20.68 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 150 | 20.71 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 161 | 20.73 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 182 | 20.77 | humidity | 90 | 14400 | < th | dose independent | sin | 8 | NA |
| 211 | 20.82 | humidity | 70 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 215 | 20.82 | humidity | 50 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 217 | 20.83 | humidity | 70 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 221 | 20.83 | humidity | 80 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 241 | 20.86 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 261 | 20.88 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 311 | 20.95 | radiation | 1 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 325 | 20.95 | radiation | 1 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 342 | 20.96 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 5 |
| 349 | 20.96 | humidity | 90 | 14400 | > th | dose dependent | rect. | 13 | 20 |
| 353 | 20.97 | humidity | 50 | 43200 | > th | dose independent | rect. | 1 | 8 |
| 356 | 20.97 | wind | 7 | 43200 | > th | dose dependent | sin | 10 | NA |
| 365 | 20.98 | wind | 3 | 43200 | < th | dose independent | rect. | 13 | 3 |
| 370 | 20.98 | wind | 7 | 43200 | > th | dose dependent | rect. | 18 | 14 |
| 383 | 20.99 | humidity | 50 | 43200 | > th | dose independent | rect. | 22 | 11 |
| 392 | 20.99 | humidity | 90 | 14400 | > th | dose dependent | rect. | 8 | 22 |
| 397 | 21.00 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 3 |
| 402 | 21.00 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 13 |
| 414 | 21.01 | wind | 3 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 415 | 21.01 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 421 | 21.01 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 422 | 21.01 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 17 |
| 427 | 21.01 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 428 | 21.01 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 17 |
| 447 | 21.03 | temperature | 20 | 43200 | < th | dose independent | rect. | 14 | 5 |
| 456 | 21.04 | temperature | 20 | 43200 | > th | dose independent | rect. | 14 | 4 |
| 472 | 21.05 | temperature | 20 | 43200 | > th | dose independent | rect. | 12 | 7 |
| 486 | 21.06 | wind | 7 | 43200 | > th | dose independent | sin | 10 | NA |
| 489 | 21.06 | wind | 3 | 43200 | > th | dose independent | rect. | 13 | 3 |
| 511 | 21.07 | temperature | 20 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 519 | 21.07 | temperature | 20 | 43200 | > th | dose independent | rect. | 9 | 10 |
| 528 | 21.07 | humidity | 50 | 43200 | < th | dose dependent | rect. | 5 | 7 |
| 529 | 21.07 | radiation | 10 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 537 | 21.08 | wind | 9 | 43200 | < th | dose independent | sin | 10 | NA |
| 538 | 21.08 | radiation | 10 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 556 | 21.08 | wind | 9 | 43200 | < th | dose independent | rect. | 16 | 19 |
| 559 | 21.08 | radiation | 10 | 43200 | < th | dose dependent | rect. | 24 | 5 |
| 565 | 21.09 | temperature | 15 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 566 | 21.09 | temperature | 20 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 611 | 21.10 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 19 |
| 614 | 21.10 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 658 | 21.11 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 666 | 21.12 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 3 |
| 679 | 21.12 | temperature | 20 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 680 | 21.12 | humidity | 50 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 684 | 21.13 | temperature | 20 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 704 | 21.13 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 5 |
| 739 | 21.15 | temperature | 20 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 772 | 21.16 | temperature | 20 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 804 | 21.16 | wind | 1 | 43200 | < th | dose independent | rect. | 9 | 17 |
| 810 | 21.16 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 3 |
| 823 | 21.16 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 826 | 21.17 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 827 | 21.17 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 848 | 21.17 | humidity | 50 | 43200 | < th | dose dependent | sin | 7 | NA |
| 901 | 21.18 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 7 |
| 933 | 21.19 | radiation | 10 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 969 | 21.20 | temperature | 20 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 986 | 21.21 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 1 |