Os04g0563100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF300 family protein.
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Os04g0563100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF300 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.59 | 0.186 | 10.8 | 0.145 | 0.249 | 0.365 | -0.0964 | 0.136 | 0.134 | 23.2 | 21.44 | 1674 | -- | -- |
| 15.63 | 0.184 | 10.8 | 0.11 | 0.248 | 0.351 | -0.0961 | -- | 0.125 | 23.2 | 21.51 | 1665 | -- | -- |
| 15.63 | 0.184 | 10.8 | 0.149 | 0.25 | 0.368 | -- | 0.135 | 0.134 | 23.1 | 21.49 | 1648 | -- | -- |
| 15.66 | 0.184 | 10.8 | 0.116 | 0.249 | 0.353 | -- | -- | 0.126 | 23.1 | 21.51 | 1623 | -- | -- |
| 18.68 | 0.201 | 10.8 | 0.154 | -- | 0.372 | -- | 0.0901 | 0.132 | -- | 21.38 | 959 | -- | -- |
| 19.3 | 0.206 | 10.8 | 0.262 | 0.251 | -- | -0.111 | -- | 0.228 | 23.2 | -- | -- | -- | -- |
| 19.35 | 0.206 | 10.8 | 0.267 | 0.252 | -- | -- | -- | 0.229 | 23.1 | -- | -- | -- | -- |
| 18.71 | 0.201 | 10.8 | 0.13 | -- | 0.368 | -- | -- | 0.129 | -- | 21.36 | 959 | -- | -- |
| 15.95 | 0.186 | 10.8 | -- | 0.247 | 0.392 | -- | -- | 0.104 | 23.2 | 21.4 | 1728 | -- | -- |
| 23.29 | 0.226 | 10.8 | 0.273 | -- | -- | -- | -- | 0.231 | -- | -- | -- | -- | -- |
| 21.23 | 0.216 | 10.8 | -- | 0.254 | -- | -- | -- | 0.199 | 23.2 | -- | -- | -- | -- |
| 19.1 | 0.204 | 10.8 | -- | -- | 0.405 | -- | -- | 0.106 | -- | 21.31 | 984 | -- | -- |
| 25.25 | 0.235 | 10.8 | -- | -- | -- | -- | -- | 0.201 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.18 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 3 | 13.69 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 4 | 13.75 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 5 | 13.80 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 17 | 14.39 | wind | 1.0 | 43200 | > th | dose independent | rect. | 23 | 8 |
| 35 | 14.74 | wind | 1.0 | 43200 | < th | dose independent | rect. | 23 | 8 |
| 45 | 14.89 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 49 | 14.91 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 57 | 14.96 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 58 | 14.96 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 72 | 15.06 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 73 | 15.06 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 75 | 15.07 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 79 | 15.10 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 87 | 15.17 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 91 | 15.18 | wind | 1.0 | 43200 | < th | dose independent | rect. | 20 | 11 |
| 111 | 15.29 | wind | 5.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 117 | 15.32 | wind | 5.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 129 | 15.38 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 131 | 15.38 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 133 | 15.40 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 136 | 15.40 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 138 | 15.44 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 23 | 7 |
| 139 | 15.45 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 143 | 15.46 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 12 |
| 154 | 15.50 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 156 | 15.51 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 12 |
| 160 | 15.51 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 12 |
| 168 | 15.53 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 12 |
| 172 | 15.55 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 174 | 15.55 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 192 | 15.61 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 203 | 15.65 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 208 | 15.66 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 3 |
| 215 | 15.67 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 219 | 15.68 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 223 | 15.69 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 226 | 15.69 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 228 | 15.69 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 229 | 15.69 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 237 | 15.72 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 244 | 15.73 | wind | 1.0 | 43200 | > th | dose independent | sin | 9 | NA |
| 250 | 15.73 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 8 |
| 252 | 15.74 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 262 | 15.75 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 270 | 15.77 | wind | 1.0 | 43200 | < th | dose independent | sin | 9 | NA |
| 281 | 15.78 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 286 | 15.79 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 299 | 15.81 | atmosphere | 1005.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 306 | 15.81 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 7 |
| 314 | 15.82 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 319 | 15.82 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 327 | 15.83 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 21 | 14 |
| 328 | 15.83 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 336 | 15.84 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 339 | 15.84 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 345 | 15.85 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 21 | 4 |
| 346 | 15.85 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 7 |
| 348 | 15.85 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 21 | 14 |
| 350 | 15.85 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 353 | 15.85 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 7 |
| 357 | 15.86 | wind | 3.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 358 | 15.86 | atmosphere | 1005.0 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 366 | 15.86 | humidity | 70.0 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 367 | 15.86 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 371 | 15.87 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 372 | 15.87 | atmosphere | 1005.0 | 4320 | > th | dose independent | rect. | 21 | 4 |
| 387 | 15.88 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 392 | 15.89 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 7 |
| 397 | 15.89 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 15 |
| 398 | 15.89 | temperature | 20.0 | 270 | > th | dose independent | rect. | 11 | 21 |
| 399 | 15.89 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 2 |
| 404 | 15.89 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 23 | 7 |
| 406 | 15.89 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 23 | 9 |
| 408 | 15.89 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 15 |
| 415 | 15.90 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 18 |
| 425 | 15.91 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 15 |
| 431 | 15.91 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 15 |
| 436 | 15.92 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 443 | 15.93 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 448 | 15.93 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 449 | 15.93 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 9 |
| 456 | 15.93 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 6 |
| 458 | 15.93 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 9 |
| 475 | 15.94 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 7 |
| 485 | 15.95 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 9 |
| 492 | 15.95 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 495 | 15.95 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 9 |
| 497 | 15.95 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 10 |
| 499 | 15.96 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 506 | 15.96 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 9 |
| 516 | 15.96 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 518 | 15.96 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 9 |
| 528 | 15.97 | atmosphere | 1005.0 | 4320 | > th | dose independent | rect. | 20 | 12 |
| 529 | 15.97 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 20 | 12 |
| 535 | 15.97 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 546 | 15.98 | wind | 3.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 547 | 15.98 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 566 | 15.98 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 5 |
| 572 | 15.98 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 20 | 7 |
| 613 | 16.00 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 9 |
| 660 | 16.01 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 7 | 7 |
| 687 | 16.02 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 7 |
| 746 | 16.04 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 15 | NA |
| 775 | 16.05 | atmosphere | 1005.0 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 777 | 16.05 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 782 | 16.05 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 6 |
| 824 | 16.06 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 7 | 2 |
| 857 | 16.07 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 7 | 2 |
| 980 | 16.09 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 24 | 15 |
| 985 | 16.10 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 987 | 16.10 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 6 | 2 |